=>> Building biology/trimmomatic build started at Fri May 2 13:29:09 BST 2025 port directory: /usr/ports/biology/trimmomatic package name: trimmomatic-0.39 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: ports@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 712 Jan 27 13:48 /usr/ports/biology/trimmomatic/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: 0835676e36 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 06 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/06/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- ports@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/trimmomatic/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/trimmomatic/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/trimmomatic/work/.cache HOME=/wrkdirs/usr/ports/biology/trimmomatic/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/trimmomatic/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/trimmomatic/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/trimmomatic/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/trimmomatic/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/trimmomatic/work/.cache HOME=/wrkdirs/usr/ports/biology/trimmomatic/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/trimmomatic/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/trimmomatic/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/trimmomatic" EXAMPLESDIR="share/examples/trimmomatic" DATADIR="share/trimmomatic" WWWDIR="www/trimmomatic" ETCDIR="etc/trimmomatic" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/trimmomatic DOCSDIR=/usr/local/share/doc/trimmomatic EXAMPLESDIR=/usr/local/share/examples/trimmomatic WWWDIR=/usr/local/www/trimmomatic ETCDIR=/usr/local/etc/trimmomatic --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: The trimmomatic port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> trimmomatic-0.39 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> trimmomatic-0.39 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of trimmomatic-0.39 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: The trimmomatic port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> Fetching all distfiles required by trimmomatic-0.39 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: The trimmomatic port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> Fetching all distfiles required by trimmomatic-0.39 for building => SHA256 Checksum OK for Trimmomatic-0.39.zip. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: The trimmomatic port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> Fetching all distfiles required by trimmomatic-0.39 for building ===> Extracting for trimmomatic-0.39 => SHA256 Checksum OK for Trimmomatic-0.39.zip. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for trimmomatic-0.39 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for trimmomatic-0.39 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> trimmomatic-0.39 depends on file: /usr/local/openjdk21/bin/java - not found ===> Installing existing package /packages/All/openjdk21-21.0.7+6.1.pkg [pkg-builder.dan.net.uk] Installing openjdk21-21.0.7+6.1... [pkg-builder.dan.net.uk] `-- Installing alsa-lib-1.2.13... [pkg-builder.dan.net.uk] `-- Extracting alsa-lib-1.2.13: .......... done [pkg-builder.dan.net.uk] `-- Installing fontconfig-2.15.0_3,1... [pkg-builder.dan.net.uk] | `-- Installing expat-2.7.1... [pkg-builder.dan.net.uk] | `-- Extracting expat-2.7.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing freetype2-2.13.3... [pkg-builder.dan.net.uk] | `-- Extracting freetype2-2.13.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting fontconfig-2.15.0_3,1: .......... done [pkg-builder.dan.net.uk] `-- Installing giflib-5.2.2... [pkg-builder.dan.net.uk] `-- Extracting giflib-5.2.2: .......... done [pkg-builder.dan.net.uk] `-- Installing harfbuzz-10.3.0... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing glib-2.84.1_2,2... [pkg-builder.dan.net.uk] | | `-- Installing libffi-3.4.8... [pkg-builder.dan.net.uk] | | `-- Extracting libffi-3.4.8: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libiconv-1.17_1... [pkg-builder.dan.net.uk] | | `-- Extracting libiconv-1.17_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libinotify-20240724_1... [pkg-builder.dan.net.uk] | | `-- Extracting libinotify-20240724_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing pcre2-10.45_1... [pkg-builder.dan.net.uk] | | `-- Installing readline-8.2.13_2... [pkg-builder.dan.net.uk] | | `-- Extracting readline-8.2.13_2: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting pcre2-10.45_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-packaging-24.2... [pkg-builder.dan.net.uk] | | `-- Installing python311-3.11.12... [pkg-builder.dan.net.uk] | | | `-- Installing mpdecimal-4.0.0... [pkg-builder.dan.net.uk] | | | `-- Extracting mpdecimal-4.0.0: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] | | | `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting python311-3.11.12: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py311-packaging-24.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting glib-2.84.1_2,2: .......... done [pkg-builder.dan.net.uk] | `-- Installing graphite2-1.3.14... [pkg-builder.dan.net.uk] | `-- Extracting graphite2-1.3.14: .......... done [pkg-builder.dan.net.uk] `-- Extracting harfbuzz-10.3.0: .......... done [pkg-builder.dan.net.uk] `-- Installing javavmwrapper-2.7.10... [pkg-builder.dan.net.uk] `-- Extracting javavmwrapper-2.7.10: .......... done [pkg-builder.dan.net.uk] `-- Installing jpeg-turbo-3.1.0... [pkg-builder.dan.net.uk] `-- Extracting jpeg-turbo-3.1.0: .......... done [pkg-builder.dan.net.uk] `-- Installing lcms2-2.17... [pkg-builder.dan.net.uk] | `-- Installing tiff-4.7.0... [pkg-builder.dan.net.uk] | | `-- Installing jbigkit-2.1_3... [pkg-builder.dan.net.uk] | | `-- Extracting jbigkit-2.1_3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing lerc-4.0.0... [pkg-builder.dan.net.uk] | | `-- Extracting lerc-4.0.0: ..... done [pkg-builder.dan.net.uk] | | `-- Installing libdeflate-1.22... [pkg-builder.dan.net.uk] | | `-- Extracting libdeflate-1.22: .......... done [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.7... [pkg-builder.dan.net.uk] | | `-- Installing liblz4-1.10.0,1... [pkg-builder.dan.net.uk] | | `-- Extracting liblz4-1.10.0,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.7: .......... done [pkg-builder.dan.net.uk] | `-- Extracting tiff-4.7.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting lcms2-2.17: .......... done [pkg-builder.dan.net.uk] `-- Installing libX11-1.8.12,1... [pkg-builder.dan.net.uk] | `-- Installing libxcb-1.17.0... [pkg-builder.dan.net.uk] | | `-- Installing libXau-1.0.11... [pkg-builder.dan.net.uk] | | `-- Extracting libXau-1.0.11: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXdmcp-1.1.5... [pkg-builder.dan.net.uk] | | `-- Installing xorgproto-2024.1... [pkg-builder.dan.net.uk] | | `-- Extracting xorgproto-2024.1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg-builder.dan.net.uk] | `-- Extracting libxcb-1.17.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting libX11-1.8.12,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXext-1.3.6,1... [pkg-builder.dan.net.uk] `-- Extracting libXext-1.3.6,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXi-1.8.1,1... [pkg-builder.dan.net.uk] | `-- Installing libXfixes-6.0.1... [pkg-builder.dan.net.uk] | `-- Extracting libXfixes-6.0.1: ....... done [pkg-builder.dan.net.uk] `-- Extracting libXi-1.8.1,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXrandr-1.5.4... [pkg-builder.dan.net.uk] | `-- Installing libXrender-0.9.12... [pkg-builder.dan.net.uk] | `-- Extracting libXrender-0.9.12: ....... done [pkg-builder.dan.net.uk] `-- Extracting libXrandr-1.5.4: .......... done [pkg-builder.dan.net.uk] `-- Installing libXt-1.3.0,1... [pkg-builder.dan.net.uk] | `-- Installing libICE-1.1.1,1... [pkg-builder.dan.net.uk] | `-- Extracting libICE-1.1.1,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libSM-1.2.6,1... [pkg-builder.dan.net.uk] | `-- Extracting libSM-1.2.6,1: ........ done [pkg-builder.dan.net.uk] `-- Extracting libXt-1.3.0,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXtst-1.2.4... [pkg-builder.dan.net.uk] `-- Extracting libXtst-1.2.4: .......... done [pkg-builder.dan.net.uk] `-- Installing png-1.6.47... [pkg-builder.dan.net.uk] `-- Extracting png-1.6.47: .......... done [pkg-builder.dan.net.uk] `-- Installing xorg-fonts-truetype-7.7_1... [pkg-builder.dan.net.uk] | `-- Installing dejavu-2.37_3... [pkg-builder.dan.net.uk] | | `-- Installing mkfontscale-1.2.3... [pkg-builder.dan.net.uk] | | `-- Installing libfontenc-1.1.8... [pkg-builder.dan.net.uk] | | `-- Extracting libfontenc-1.1.8: ...... done [pkg-builder.dan.net.uk] | | `-- Extracting mkfontscale-1.2.3: .... done [pkg-builder.dan.net.uk] | `-- Extracting dejavu-2.37_3: .......... done [pkg-builder.dan.net.uk] | `-- Installing encodings-1.1.0,1... [pkg-builder.dan.net.uk] | `-- Extracting encodings-1.1.0,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing font-bh-ttf-1.0.3_5... [pkg-builder.dan.net.uk] | `-- Extracting font-bh-ttf-1.0.3_5: .......... done [pkg-builder.dan.net.uk] | `-- Installing font-misc-ethiopic-1.0.4... [pkg-builder.dan.net.uk] | `-- Extracting font-misc-ethiopic-1.0.4: ... done [pkg-builder.dan.net.uk] | `-- Installing font-misc-meltho-1.0.3_5... [pkg-builder.dan.net.uk] | `-- Extracting font-misc-meltho-1.0.3_5: .......... done [pkg-builder.dan.net.uk] Extracting openjdk21-21.0.7+6.1: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from freetype2-2.13.3: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from libinotify-20240724_1: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from python311-3.11.12: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===== Message from dejavu-2.37_3: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from openjdk21-21.0.7+6.1: -- This OpenJDK implementation may require fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc for some applications. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> trimmomatic-0.39 depends on file: /usr/local/openjdk21/bin/java - found ===> Returning to build of trimmomatic-0.39 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for trimmomatic-0.39 ===> Generating temporary packing list install -m 0644 /wrkdirs/usr/ports/biology/trimmomatic/work/Trimmomatic-0.39/trimmomatic-0.39.jar /wrkdirs/usr/ports/biology/trimmomatic/work/stage/usr/local/share/java/classes/trimmomatic.jar cd /wrkdirs/usr/ports/biology/trimmomatic/work/Trimmomatic-0.39 && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE adapters /wrkdirs/usr/ports/biology/trimmomatic/work/stage/usr/local/share/trimmomatic install -m 555 /wrkdirs/usr/ports/biology/trimmomatic/work/trimmomatic /wrkdirs/usr/ports/biology/trimmomatic/work/stage/usr/local/bin ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-02T12:29:09+0000' 'PKG_NOTE_ports_top_git_hash=5529c5919b' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=0835676e36' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for trimmomatic-0.39 ===> Building trimmomatic-0.39 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for trimmomatic-0.39 build of biology/trimmomatic | trimmomatic-0.39 ended at Fri May 2 13:29:35 BST 2025 build time: 00:00:26