=>> Building science/serac build started at Mon May 5 04:12:45 BST 2025 port directory: /usr/ports/science/serac package name: serac-g20220823_6 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1627 Apr 5 02:48 /usr/ports/science/serac/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: 6e2d048bef Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 02 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for serac-g20220823_6: ====> MPI (Message Passing Interface) support: you have to select exactly one of them MPICH=on: Parallel processing support via MPICH OPENMPI=off: Parallel processing support via Open MPI ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/serac/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/serac/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/serac/work/.cache HOME=/wrkdirs/usr/ports/science/serac/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/serac/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/serac/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/serac/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/serac/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/serac/work/.cache HOME=/wrkdirs/usr/ports/science/serac/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/serac/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/serac/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/serac/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- MPICH="" NO_MPICH="@comment " OPENMPI="@comment " NO_OPENMPI="" CMAKE_BUILD_TYPE="release" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/serac" EXAMPLESDIR="share/examples/serac" DATADIR="share/serac" WWWDIR="www/serac" ETCDIR="etc/serac" --End PLIST_SUB-- --SUB_LIST-- MPICH="" NO_MPICH="@comment " OPENMPI="@comment " NO_OPENMPI="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/serac DOCSDIR=/usr/local/share/doc/serac EXAMPLESDIR=/usr/local/share/examples/serac WWWDIR=/usr/local/www/serac ETCDIR=/usr/local/etc/serac --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> serac-g20220823_6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> serac-g20220823_6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of serac-g20220823_6 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by serac-g20220823_6 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by serac-g20220823_6 for building => SHA256 Checksum OK for LLNL-serac-g20220823-07b8ef1_GH0.tar.gz. => SHA256 Checksum OK for LLNL-blt-49971b88e631aba76a9990c7702ceee47a7c3216_GH0.tar.gz. => SHA256 Checksum OK for LLNL-uberenv-2cd030dd8fa9ff381900bfbe12fe1eea44a57bb5_GH0.tar.gz. => SHA256 Checksum OK for LLNL-serac_tests-2fee9739eadeb218e99f7f5549e0800df81ca757_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by serac-g20220823_6 for building ===> Extracting for serac-g20220823_6 => SHA256 Checksum OK for LLNL-serac-g20220823-07b8ef1_GH0.tar.gz. => SHA256 Checksum OK for LLNL-blt-49971b88e631aba76a9990c7702ceee47a7c3216_GH0.tar.gz. => SHA256 Checksum OK for LLNL-uberenv-2cd030dd8fa9ff381900bfbe12fe1eea44a57bb5_GH0.tar.gz. => SHA256 Checksum OK for LLNL-serac_tests-2fee9739eadeb218e99f7f5549e0800df81ca757_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for serac-g20220823_6 ===> Applying FreeBSD patches for serac-g20220823_6 from /usr/ports/science/serac/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> serac-g20220823_6 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.6.pkg [pkg-builder.dan.net.uk] Installing cmake-core-3.31.6... [pkg-builder.dan.net.uk] `-- Installing expat-2.7.1... [pkg-builder.dan.net.uk] `-- Extracting expat-2.7.1: .......... done [pkg-builder.dan.net.uk] `-- Installing jsoncpp-1.9.6_1... [pkg-builder.dan.net.uk] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg-builder.dan.net.uk] `-- Installing libidn2-2.3.8... [pkg-builder.dan.net.uk] | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] | `-- Installing libunistring-1.3... [pkg-builder.dan.net.uk] | `-- Extracting libunistring-1.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting libidn2-2.3.8: .......... done [pkg-builder.dan.net.uk] `-- Installing libuv-1.51.0... [pkg-builder.dan.net.uk] `-- Extracting libuv-1.51.0: .......... done [pkg-builder.dan.net.uk] `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] `-- Installing rhash-1.4.4_1... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg-builder.dan.net.uk] `-- Extracting rhash-1.4.4_1: .......... done [pkg-builder.dan.net.uk] Extracting cmake-core-3.31.6: .......... done ===> serac-g20220823_6 depends on file: /usr/local/bin/cmake - found ===> Returning to build of serac-g20220823_6 ===> serac-g20220823_6 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,4.pkg [pkg-builder.dan.net.uk] Installing ninja-1.11.1,4... [pkg-builder.dan.net.uk] `-- Installing python311-3.11.12... [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.8... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.8: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-4.0.0... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-4.0.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.13_2... [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.13_2: .......... done [pkg-builder.dan.net.uk] `-- Extracting python311-3.11.12: .......... done [pkg-builder.dan.net.uk] Extracting ninja-1.11.1,4: ..... done ===== Message from python311-3.11.12: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> serac-g20220823_6 depends on executable: ninja - found ===> Returning to build of serac-g20220823_6 ===> serac-g20220823_6 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> serac-g20220823_6 depends on file: /usr/local/bin/ccache - found ===> Returning to build of serac-g20220823_6 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> serac-g20220823_6 depends on shared library: libaxom.so - not found ===> Installing existing package /packages/All/axom-0.10.1.pkg [pkg-builder.dan.net.uk] Installing axom-0.10.1... [pkg-builder.dan.net.uk] `-- Installing conduit-0.9.3... [pkg-builder.dan.net.uk] | `-- Installing gcc13-13.3.0_2... [pkg-builder.dan.net.uk] | | `-- Installing binutils-2.44,1... [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.7... [pkg-builder.dan.net.uk] | | | `-- Installing liblz4-1.10.0,1... [pkg-builder.dan.net.uk] | | | `-- Extracting liblz4-1.10.0,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.7: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting binutils-2.44,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | `-- Installing mpfr-4.2.2,1... [pkg-builder.dan.net.uk] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] | `-- Extracting gcc13-13.3.0_2: .......... done create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) [pkg-builder.dan.net.uk] | `-- Installing hdf5-1.12.2_2,1... [pkg-builder.dan.net.uk] | `-- Extracting hdf5-1.12.2_2,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpich-4.3.0... [pkg-builder.dan.net.uk] | | `-- Installing hwloc2-2.11.2... [pkg-builder.dan.net.uk] | | `-- Installing level-zero-1.21.9... [pkg-builder.dan.net.uk] | | | `-- Installing libfmt-10.2.1... [pkg-builder.dan.net.uk] | | | `-- Extracting libfmt-10.2.1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing spdlog-1.15.2... [pkg-builder.dan.net.uk] | | | `-- Extracting spdlog-1.15.2: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting level-zero-1.21.9: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libpciaccess-0.18.1_1... [pkg-builder.dan.net.uk] | | | `-- Installing hwdata-0.394,1... [pkg-builder.dan.net.uk] | | | `-- Extracting hwdata-0.394,1: ...... done [pkg-builder.dan.net.uk] | | `-- Extracting libpciaccess-0.18.1_1: ..... done [pkg-builder.dan.net.uk] | | `-- Installing libxml2-2.11.9... [pkg-builder.dan.net.uk] | | `-- Extracting libxml2-2.11.9: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting hwloc2-2.11.2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing json-c-0.18... [pkg-builder.dan.net.uk] | | `-- Extracting json-c-0.18: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libepoll-shim-0.0.20240608... [pkg-builder.dan.net.uk] | | `-- Extracting libepoll-shim-0.0.20240608: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libfabric-1.15.1_4... [pkg-builder.dan.net.uk] | | `-- Extracting libfabric-1.15.1_4: .......... done [pkg-builder.dan.net.uk] | | `-- Installing perl5-5.36.3_3... [pkg-builder.dan.net.uk] | | `-- Extracting perl5-5.36.3_3: .......... done [pkg-builder.dan.net.uk] | `-- Extracting mpich-4.3.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing silo-4.11.68_1... [pkg-builder.dan.net.uk] | `-- Extracting silo-4.11.68_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting conduit-0.9.3: .......... done [pkg-builder.dan.net.uk] `-- Installing hypre-2.33.0... [pkg-builder.dan.net.uk] | `-- Installing openblas-0.3.29_1,2... [pkg-builder.dan.net.uk] | `-- Extracting openblas-0.3.29_1,2: .......... done [pkg-builder.dan.net.uk] | `-- Installing superlu-5.3.0_4... [pkg-builder.dan.net.uk] | | `-- Installing blas-3.12.1... [pkg-builder.dan.net.uk] | | `-- Extracting blas-3.12.1: ..... done [pkg-builder.dan.net.uk] | | `-- Installing lapack-3.12.1... [pkg-builder.dan.net.uk] | | `-- Extracting lapack-3.12.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting superlu-5.3.0_4: .......... done [pkg-builder.dan.net.uk] `-- Extracting hypre-2.33.0: .......... done [pkg-builder.dan.net.uk] `-- Installing lua54-5.4.7... [pkg-builder.dan.net.uk] | `-- Installing libedit-3.1.20250104,1... [pkg-builder.dan.net.uk] | `-- Extracting libedit-3.1.20250104,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting lua54-5.4.7: .......... done [pkg-builder.dan.net.uk] `-- Installing metis-5.1.0.p13,1... [pkg-builder.dan.net.uk] `-- Extracting metis-5.1.0.p13,1: .......... done [pkg-builder.dan.net.uk] `-- Installing mfem-4.7_1... [pkg-builder.dan.net.uk] | `-- Installing superlu-dist-9.1.0_1... [pkg-builder.dan.net.uk] | `-- Extracting superlu-dist-9.1.0_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting mfem-4.7_1: .......... done [pkg-builder.dan.net.uk] `-- Installing sparsehash-2.0.4... [pkg-builder.dan.net.uk] `-- Extracting sparsehash-2.0.4: .......... done [pkg-builder.dan.net.uk] Extracting axom-0.10.1: .......... done ===== Message from gcc13-13.3.0_2: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from metis-5.1.0.p13,1: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> serac-g20220823_6 depends on shared library: libaxom.so - not found *** Error code 1 Stop. make: stopped in /usr/ports/science/serac =>> Cleaning up wrkdir ===> Cleaning for serac-g20220823_6 build of science/serac | serac-g20220823_6 ended at Mon May 5 04:14:11 BST 2025 build time: 00:01:27 !!! build failure encountered !!!