=>> Building science/rdkit build started at Fri May 2 06:21:49 BST 2025 port directory: /usr/ports/science/rdkit package name: rdkit-2025.03.1 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 3323 Apr 21 07:02 /usr/ports/science/rdkit/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: d8e71b1111 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 02 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for rdkit-2025.03.1: DOCS=on: Build and/or install documentation PGSQL=off: Build the PostgreSQL cartridge PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/rdkit/work/.cache HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/rdkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/rdkit/work/.cache HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/rdkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/rdkit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- SHLIB_VER=2025.03.1 PORTDOCS="" DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " LITTLE_ENDIAN="" CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/RDKit" EXAMPLESDIR="share/examples/rdkit" DATADIR="share/RDKit" WWWDIR="www/rdkit" ETCDIR="etc/rdkit" --End PLIST_SUB-- --SUB_LIST-- DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/RDKit DOCSDIR=/usr/local/share/doc/RDKit EXAMPLESDIR=/usr/local/share/examples/rdkit WWWDIR=/usr/local/www/rdkit ETCDIR=/usr/local/etc/rdkit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> rdkit-2025.03.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> rdkit-2025.03.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of rdkit-2025.03.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by rdkit-2025.03.1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by rdkit-2025.03.1 for building => SHA256 Checksum OK for rdkit-2025.03.1/ComicNeue-Regular.ttf. => SHA256 Checksum OK for rdkit-2025.03.1/rdkit-rdkit-Release_2025_03_1_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2025.03.1/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2025.03.1/ncbi-pubchem-align3d-daefab3_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2025.03.1/aantron-better-enums-520d8ee_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by rdkit-2025.03.1 for building ===> Extracting for rdkit-2025.03.1 => SHA256 Checksum OK for rdkit-2025.03.1/ComicNeue-Regular.ttf. => SHA256 Checksum OK for rdkit-2025.03.1/rdkit-rdkit-Release_2025_03_1_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2025.03.1/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2025.03.1/ncbi-pubchem-align3d-daefab3_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2025.03.1/aantron-better-enums-520d8ee_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for rdkit-2025.03.1 ===> Applying FreeBSD patches for rdkit-2025.03.1 from /usr/ports/science/rdkit/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> rdkit-2025.03.1 depends on package: catch>0 - not found ===> Installing existing package /packages/All/catch-2.13.10.pkg [pkg-builder.dan.net.uk] Installing catch-2.13.10... [pkg-builder.dan.net.uk] Extracting catch-2.13.10: .......... done ===> rdkit-2025.03.1 depends on package: catch>0 - found ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on executable: flex - found ===> rdkit-2025.03.1 depends on package: rapidjson>=0 - not found ===> Installing existing package /packages/All/rapidjson-1.1.0.709.pkg [pkg-builder.dan.net.uk] Installing rapidjson-1.1.0.709... [pkg-builder.dan.net.uk] Extracting rapidjson-1.1.0.709: .......... done ===> rdkit-2025.03.1 depends on package: rapidjson>=0 - found ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_6,1.pkg [pkg-builder.dan.net.uk] Installing py311-numpy-1.26.4_6,1... [pkg-builder.dan.net.uk] `-- Installing gcc13-13.3.0_2... [pkg-builder.dan.net.uk] | `-- Installing binutils-2.44,1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.7... [pkg-builder.dan.net.uk] | | `-- Installing liblz4-1.10.0,1... [pkg-builder.dan.net.uk] | | `-- Extracting liblz4-1.10.0,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.7: .......... done [pkg-builder.dan.net.uk] | `-- Extracting binutils-2.44,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | `-- Installing mpfr-4.2.2,1... [pkg-builder.dan.net.uk] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] `-- Extracting gcc13-13.3.0_2: .......... done [pkg-builder.dan.net.uk] `-- Installing openblas-0.3.29_1,2... [pkg-builder.dan.net.uk] `-- Extracting openblas-0.3.29_1,2: .......... done [pkg-builder.dan.net.uk] `-- Installing python311-3.11.12... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.8... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.8: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-4.0.0... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-4.0.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] | `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.13_2... [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.13_2: .......... done [pkg-builder.dan.net.uk] `-- Extracting python311-3.11.12: .......... done [pkg-builder.dan.net.uk] `-- Installing suitesparse-umfpack-6.3.5_1... [pkg-builder.dan.net.uk] | `-- Installing suitesparse-amd-3.3.3... [pkg-builder.dan.net.uk] | | `-- Installing suitesparse-config-7.10.2... [pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-config-7.10.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-amd-3.3.3: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-camd-3.3.3... [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-camd-3.3.3: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-ccolamd-3.3.4... [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-ccolamd-3.3.4: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-cholmod-5.3.2... [pkg-builder.dan.net.uk] | | `-- Installing suitesparse-colamd-3.3.4... [pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-colamd-3.3.4: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-cholmod-5.3.2: .......... done [pkg-builder.dan.net.uk] `-- Extracting suitesparse-umfpack-6.3.5_1: .......... done [pkg-builder.dan.net.uk] Extracting py311-numpy-1.26.4_6,1: .......... done ===== Message from gcc13-13.3.0_2: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python311-3.11.12: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> rdkit-2025.03.1 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on executable: bison - not found ===> Installing existing package /packages/All/bison-3.8.2_2,1.pkg [pkg-builder.dan.net.uk] Installing bison-3.8.2_2,1... [pkg-builder.dan.net.uk] `-- Installing libtextstyle-0.23.1... [pkg-builder.dan.net.uk] `-- Extracting libtextstyle-0.23.1: .......... done [pkg-builder.dan.net.uk] `-- Installing m4-1.4.19_1,1... [pkg-builder.dan.net.uk] | `-- Installing libsigsegv-2.14... [pkg-builder.dan.net.uk] | `-- Extracting libsigsegv-2.14: ..... done [pkg-builder.dan.net.uk] `-- Extracting m4-1.4.19_1,1: .......... done [pkg-builder.dan.net.uk] Extracting bison-3.8.2_2,1: .......... done ===== Message from libsigsegv-2.14: -- Note that the stackoverflow handling functions of this library need procfs mounted on /proc. ===> rdkit-2025.03.1 depends on executable: bison - found ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.6.pkg [pkg-builder.dan.net.uk] Installing cmake-core-3.31.6... [pkg-builder.dan.net.uk] `-- Installing expat-2.7.1... [pkg-builder.dan.net.uk] `-- Extracting expat-2.7.1: .......... done [pkg-builder.dan.net.uk] `-- Installing jsoncpp-1.9.6_1... [pkg-builder.dan.net.uk] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg-builder.dan.net.uk] `-- Installing libidn2-2.3.8... [pkg-builder.dan.net.uk] | `-- Installing libunistring-1.3... [pkg-builder.dan.net.uk] | `-- Extracting libunistring-1.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting libidn2-2.3.8: .......... done [pkg-builder.dan.net.uk] `-- Installing libuv-1.51.0... [pkg-builder.dan.net.uk] `-- Extracting libuv-1.51.0: .......... done [pkg-builder.dan.net.uk] `-- Installing rhash-1.4.4_1... [pkg-builder.dan.net.uk] `-- Extracting rhash-1.4.4_1: .......... done [pkg-builder.dan.net.uk] Extracting cmake-core-3.31.6: .......... done ===> rdkit-2025.03.1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,4.pkg [pkg-builder.dan.net.uk] Installing ninja-1.11.1,4... [pkg-builder.dan.net.uk] Extracting ninja-1.11.1,4: ..... done ===> rdkit-2025.03.1 depends on executable: ninja - found ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.4.0_4.pkg [pkg-builder.dan.net.uk] Installing eigen-3.4.0_4... [pkg-builder.dan.net.uk] `-- Installing blas-3.12.1... [pkg-builder.dan.net.uk] `-- Extracting blas-3.12.1: ..... done [pkg-builder.dan.net.uk] `-- Installing lapack-3.12.1... [pkg-builder.dan.net.uk] `-- Extracting lapack-3.12.1: .......... done [pkg-builder.dan.net.uk] Extracting eigen-3.4.0_4: .......... done ===> rdkit-2025.03.1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on file: /usr/local/bin/python3.11 - found ===> rdkit-2025.03.1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> rdkit-2025.03.1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of rdkit-2025.03.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> rdkit-2025.03.1 depends on shared library: libboost_system.so - not found ===> Installing existing package /packages/All/boost-libs-1.87.0_1.pkg [pkg-builder.dan.net.uk] Installing boost-libs-1.87.0_1... [pkg-builder.dan.net.uk] `-- Installing icu-76.1,1... [pkg-builder.dan.net.uk] `-- Extracting icu-76.1,1: .......... done [pkg-builder.dan.net.uk] Extracting boost-libs-1.87.0_1: .......... done ===== Message from boost-libs-1.87.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> rdkit-2025.03.1 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so) ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on shared library: libcoordgen.so - not found ===> Installing existing package /packages/All/coordgenlibs-3.0.2.pkg [pkg-builder.dan.net.uk] Installing coordgenlibs-3.0.2... [pkg-builder.dan.net.uk] `-- Installing maeparser-1.3.2... [pkg-builder.dan.net.uk] `-- Extracting maeparser-1.3.2: .......... done [pkg-builder.dan.net.uk] Extracting coordgenlibs-3.0.2: .......... done ===> rdkit-2025.03.1 depends on shared library: libcoordgen.so - found (/usr/local/lib/libcoordgen.so) ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on shared library: libfreetype.so - not found ===> Installing existing package /packages/All/freetype2-2.13.3.pkg [pkg-builder.dan.net.uk] Installing freetype2-2.13.3... [pkg-builder.dan.net.uk] Extracting freetype2-2.13.3: .......... done ===== Message from freetype2-2.13.3: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===> rdkit-2025.03.1 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on shared library: libmaeparser.so - found (/usr/local/lib/libmaeparser.so) ===> rdkit-2025.03.1 depends on shared library: libboost_python311.so - not found ===> Installing existing package /packages/All/py311-boost-libs-1.87.0.pkg [pkg-builder.dan.net.uk] Installing py311-boost-libs-1.87.0... [pkg-builder.dan.net.uk] Extracting py311-boost-libs-1.87.0: .......... done ===== Message from py311-boost-libs-1.87.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> rdkit-2025.03.1 depends on shared library: libboost_python311.so - found (/usr/local/lib/libboost_python311.so) ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on shared library: libcairo.so - not found ===> Installing existing package /packages/All/cairo-1.18.2,3.pkg [pkg-builder.dan.net.uk] Installing cairo-1.18.2,3... [pkg-builder.dan.net.uk] `-- Installing fontconfig-2.15.0_3,1... [pkg-builder.dan.net.uk] `-- Extracting fontconfig-2.15.0_3,1: .......... done [pkg-builder.dan.net.uk] `-- Installing glib-2.84.1_2,2... [pkg-builder.dan.net.uk] | `-- Installing libiconv-1.17_1... [pkg-builder.dan.net.uk] | `-- Extracting libiconv-1.17_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libinotify-20240724_1... [pkg-builder.dan.net.uk] | `-- Extracting libinotify-20240724_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing pcre2-10.45_1... [pkg-builder.dan.net.uk] | `-- Extracting pcre2-10.45_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-packaging-24.2... [pkg-builder.dan.net.uk] | `-- Extracting py311-packaging-24.2: .......... done [pkg-builder.dan.net.uk] `-- Extracting glib-2.84.1_2,2: .......... done [pkg-builder.dan.net.uk] `-- Installing libX11-1.8.12,1... [pkg-builder.dan.net.uk] | `-- Installing libxcb-1.17.0... [pkg-builder.dan.net.uk] | | `-- Installing libXau-1.0.11... [pkg-builder.dan.net.uk] | | `-- Extracting libXau-1.0.11: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXdmcp-1.1.5... [pkg-builder.dan.net.uk] | | `-- Installing xorgproto-2024.1... [pkg-builder.dan.net.uk] | | `-- Extracting xorgproto-2024.1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg-builder.dan.net.uk] | `-- Extracting libxcb-1.17.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting libX11-1.8.12,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXext-1.3.6,1... [pkg-builder.dan.net.uk] `-- Extracting libXext-1.3.6,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXrender-0.9.12... [pkg-builder.dan.net.uk] `-- Extracting libXrender-0.9.12: ....... done [pkg-builder.dan.net.uk] `-- Installing lzo2-2.10_1... [pkg-builder.dan.net.uk] `-- Extracting lzo2-2.10_1: .......... done [pkg-builder.dan.net.uk] `-- Installing pixman-0.44.2... [pkg-builder.dan.net.uk] `-- Extracting pixman-0.44.2: ...... done [pkg-builder.dan.net.uk] `-- Installing png-1.6.47... [pkg-builder.dan.net.uk] `-- Extracting png-1.6.47: .......... done [pkg-builder.dan.net.uk] Extracting cairo-1.18.2,3: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from libinotify-20240724_1: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===> rdkit-2025.03.1 depends on shared library: libcairo.so - found (/usr/local/lib/libcairo.so) ===> Returning to build of rdkit-2025.03.1 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for rdkit-2025.03.1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/rdkit/work/.build -- The C compiler identification is Clang 18.1.6 -- The CXX compiler identification is Clang 18.1.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning at /usr/local/share/cmake/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency Catch2 to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /wrkdirs/usr/ports/science/rdkit/work/.build/_deps/catch2-src Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/local/share/cmake/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) CMakeLists.txt:166 (FetchContent_MakeAvailable) -- Found Python3: /usr/local/bin/python3.11 (found version "3.11.12") found components: Interpreter Development.Module NumPy Python Install directory /usr/local/lib/python3.11/site-packages nbval not found, disabling the jupyter tests -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE == Using strict rotor definition -- maeparser include dir set as '/usr/local/include' -- maeparser libraries set as '/usr/local/lib/libmaeparser.so' -- coordgen include dir set as /usr/local/include -- coordgen libraries set as '/usr/local/lib/libcoordgen.so' -- Found RingDecomposerLib source in /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -- Found Python3: /usr/local/bin/python3.11 (found version "3.11.12") found components: Interpreter /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/Data/Fonts/ComicNeue-Regular.ttf already there, skipping the download -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Found Cairo: /usr/local/include/cairo -- Found Freetype: /usr/local/lib/libfreetype.so (found version "2.13.3") -- Found RapidJSON source in /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/External -- Configuring done (2.5s) -- Generating done (0.5s) CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CATCH_DIR CMAKE_COLOR_MAKEFILE CMAKE_VERBOSE_MAKEFILE Python_ADDITIONAL_VERSIONS Python_EXECUTABLE RDK_OPTIMIZE_NATIVE -- Build files have been written to: /wrkdirs/usr/ports/science/rdkit/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for rdkit-2025.03.1 [ 0% 1/692] cd /wrkdirs/usr/ports/science/rdkit/work/.build/External/INCHI-API && /usr/local/bin/cmake -E copy /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/External/INCHI-API/python/noinchi.py /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/rdkit/Chem/inchi.py [ 0% 2/692] /usr/local/libexec/ccache/c++ -DBOOST_CONTAINER_DYN_LINK -DBOOST_CONTAINER_NO_LIB -DBOOST_GRAPH_DYN_LINK -DBOOST_GRAPH_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_NUMPY_DYN_LINK -DBOOST_NUMPY_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB 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prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 147 | ind1 = ioffset_(n, &i2, &k); | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/Code/ML/Cluster/Murtagh/hc.c:149:22: warning: passing arguments to 'ioffset_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 149 | ind1 = ioffset_(n, &k, &i2); | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/Code/ML/Cluster/Murtagh/hc.c:152:22: warning: passing arguments to 'ioffset_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 152 | ind2 = ioffset_(n, &j2, &k); | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/Code/ML/Cluster/Murtagh/hc.c:154:22: warning: passing arguments to 'ioffset_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 154 | ind2 = ioffset_(n, &k, &j2); | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/Code/ML/Cluster/Murtagh/hc.c:156:20: warning: passing arguments to 'ioffset_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 156 | ind3 = ioffset_(n, &i2, &j2); | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/Code/ML/Cluster/Murtagh/hc.c:244:21: warning: passing arguments to 'ioffset_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 244 | ind = ioffset_(n, &i__, &j); | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/Code/ML/Cluster/Murtagh/hc.c:29:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 29 | /* Subroutine */ int hc_(n, len, iopt, ia, ib, crit, membr, nn, disnn, flag__, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/Code/ML/Cluster/Murtagh/hc.c:272:9: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 272 | integer ioffset_(n, i__, j) | ^ 10 warnings generated. [ 96% 670/692] /usr/local/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dhc_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -MF Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o.d -o Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/Code/ML/Cluster/Murtagh/hcdriver.c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/Code/ML/Cluster/Murtagh/hcdriver.c:32:6: warning: passing arguments to 'hc_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 32 | hc_(n, len, iopt, &ia[1], &ib[1], &crit[1], membr, nn, disnn, flag__, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/Code/ML/Cluster/Murtagh/hcdriver.c:10:5: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 10 | int distdriver_(n, len, d__, iopt, ia, ib, crit) | ^ 2 warnings generated. 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Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitChemicalFeatures.so.1.2025.03.1 lib/libRDKitGraphMol.so.1.2025.03.1 lib/libRDKitRDBoost.so.1.2025.03.1 lib/libRDKitRDGeometryLib.so.1.2025.03.1 lib/libRDKitDataStructs.so.1.2025.03.1 lib/libRDKitRingDecomposerLib.so.1.2025.03.1 /usr/local/lib/libboost_numpy311.so.1.87.0 /usr/local/lib/libboost_python311.so.1.87.0 /usr/local/lib/libboost_container.so.1.87.0 /usr/local/lib/libboost_graph.so.1.87.0 lib/libRDKitRDGeneral.so.1.2025.03.1 /usr/local/lib/libboost_serialization.so.1.87.0 /usr/local/lib/libboost_iostreams.so.1.87.0 /usr/local/lib/libboost_random.so.1.87.0 /usr/local/lib/libboost_system.so.1.87.0 /usr/local/lib/libboost_regex.so.1.87.0 -lpthread -ldl && : =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> rdkit-2025.03.1 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> rdkit-2025.03.1 depends on package: py311-pillow>=7.0.0 - not found ===> Installing existing package /packages/All/py311-pillow-11.0.0.pkg [pkg-builder.dan.net.uk] Installing py311-pillow-11.0.0... [pkg-builder.dan.net.uk] `-- Installing jpeg-turbo-3.1.0... [pkg-builder.dan.net.uk] `-- Extracting jpeg-turbo-3.1.0: .......... done [pkg-builder.dan.net.uk] `-- Installing lcms2-2.17... [pkg-builder.dan.net.uk] | `-- Installing tiff-4.7.0... [pkg-builder.dan.net.uk] | | `-- Installing jbigkit-2.1_3... [pkg-builder.dan.net.uk] | | `-- Extracting jbigkit-2.1_3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing lerc-4.0.0... [pkg-builder.dan.net.uk] | | `-- Extracting lerc-4.0.0: ..... done [pkg-builder.dan.net.uk] | | `-- Installing libdeflate-1.22... [pkg-builder.dan.net.uk] | | `-- Extracting libdeflate-1.22: .......... done [pkg-builder.dan.net.uk] | `-- Extracting tiff-4.7.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting lcms2-2.17: .......... done [pkg-builder.dan.net.uk] `-- Installing libimagequant-4.3.4_2... [pkg-builder.dan.net.uk] `-- Extracting libimagequant-4.3.4_2: ...... done [pkg-builder.dan.net.uk] `-- Installing libraqm-0.10.2... [pkg-builder.dan.net.uk] | `-- Installing fribidi-1.0.16... [pkg-builder.dan.net.uk] | `-- Extracting fribidi-1.0.16: .......... done [pkg-builder.dan.net.uk] | `-- Installing harfbuzz-10.3.0... [pkg-builder.dan.net.uk] | | `-- Installing graphite2-1.3.14... [pkg-builder.dan.net.uk] | | `-- Extracting graphite2-1.3.14: .......... done [pkg-builder.dan.net.uk] | `-- Extracting harfbuzz-10.3.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting libraqm-0.10.2: .......... done [pkg-builder.dan.net.uk] `-- Installing openjpeg-2.5.3... [pkg-builder.dan.net.uk] `-- Extracting openjpeg-2.5.3: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-olefile-0.46_1... [pkg-builder.dan.net.uk] `-- Extracting py311-olefile-0.46_1: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-tkinter-3.11.12_10... [pkg-builder.dan.net.uk] | `-- Installing tcl86-8.6.16_2... [pkg-builder.dan.net.uk] | `-- Extracting tcl86-8.6.16_2: .......... done [pkg-builder.dan.net.uk] | `-- Installing tk86-8.6.16... [pkg-builder.dan.net.uk] | | `-- Installing libXScrnSaver-1.2.4_1... [pkg-builder.dan.net.uk] | | `-- Extracting libXScrnSaver-1.2.4_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXft-2.3.8... [pkg-builder.dan.net.uk] | | `-- Extracting libXft-2.3.8: .......... done [pkg-builder.dan.net.uk] | `-- Extracting tk86-8.6.16: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-tkinter-3.11.12_10: ...... done [pkg-builder.dan.net.uk] `-- Installing webp-1.5.0... [pkg-builder.dan.net.uk] | `-- Installing freeglut-3.2.1... [pkg-builder.dan.net.uk] | | `-- Installing libGLU-9.0.3... [pkg-builder.dan.net.uk] | | `-- Installing libglvnd-1.7.0... [pkg-builder.dan.net.uk] | | `-- Extracting libglvnd-1.7.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libGLU-9.0.3: ..... done [pkg-builder.dan.net.uk] | | `-- Installing libICE-1.1.1,1... [pkg-builder.dan.net.uk] | | `-- Extracting libICE-1.1.1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXi-1.8.1,1... [pkg-builder.dan.net.uk] | | `-- Installing libXfixes-6.0.1... [pkg-builder.dan.net.uk] | | `-- Extracting libXfixes-6.0.1: ....... done [pkg-builder.dan.net.uk] | | `-- Extracting libXi-1.8.1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXrandr-1.5.4... [pkg-builder.dan.net.uk] | | `-- Extracting libXrandr-1.5.4: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXxf86vm-1.1.5... [pkg-builder.dan.net.uk] | | `-- Extracting libXxf86vm-1.1.5: .......... done [pkg-builder.dan.net.uk] | `-- Extracting freeglut-3.2.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing giflib-5.2.2... [pkg-builder.dan.net.uk] | `-- Extracting giflib-5.2.2: .......... done [pkg-builder.dan.net.uk] `-- Extracting webp-1.5.0: .......... done [pkg-builder.dan.net.uk] Extracting py311-pillow-11.0.0: .......... done ===== Message from libimagequant-4.3.4_2: -- ===> NOTICE: The libimagequant port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from freeglut-3.2.1: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. ===> rdkit-2025.03.1 depends on package: py311-pillow>=7.0.0 - found ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on package: py311-matplotlib>0 - not found ===> Installing existing package /packages/All/py311-matplotlib-3.8.0_1.pkg [pkg-builder.dan.net.uk] Installing py311-matplotlib-3.8.0_1... [pkg-builder.dan.net.uk] `-- Installing py311-certifi-2025.1.31... [pkg-builder.dan.net.uk] `-- Extracting py311-certifi-2025.1.31: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-contourpy-1.3.2... [pkg-builder.dan.net.uk] `-- Extracting py311-contourpy-1.3.2: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-cycler-0.12.1... [pkg-builder.dan.net.uk] `-- Extracting py311-cycler-0.12.1: ......... done [pkg-builder.dan.net.uk] `-- Installing py311-fonttools-4.57.0... [pkg-builder.dan.net.uk] | `-- Installing py311-fs2-2.4.16_1... [pkg-builder.dan.net.uk] | | `-- Installing py311-appdirs-1.4.4_1... [pkg-builder.dan.net.uk] | | `-- Extracting py311-appdirs-1.4.4_1: ........ done [pkg-builder.dan.net.uk] | | `-- Installing py311-pytz-2024.2_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting py311-pytz-2024.2_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-six-1.17.0... [pkg-builder.dan.net.uk] | | `-- Extracting py311-six-1.17.0: ........ done [pkg-builder.dan.net.uk] | `-- Extracting py311-fs2-2.4.16_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-lxml-4.9.3_1... [pkg-builder.dan.net.uk] | | `-- Installing libxml2-2.11.9... [pkg-builder.dan.net.uk] | | `-- Extracting libxml2-2.11.9: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libxslt-1.1.42... [pkg-builder.dan.net.uk] | | `-- Installing libgcrypt-1.11.0... [pkg-builder.dan.net.uk] | | | `-- Installing libgpg-error-1.55... [pkg-builder.dan.net.uk] | | | `-- Extracting libgpg-error-1.55: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libgcrypt-1.11.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libxslt-1.1.42: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py311-lxml-4.9.3_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-unicodedata2-16.0.0... [pkg-builder.dan.net.uk] | `-- Extracting py311-unicodedata2-16.0.0: ...... done [pkg-builder.dan.net.uk] `-- Extracting py311-fonttools-4.57.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-importlib-resources-6.5.2... [pkg-builder.dan.net.uk] `-- Extracting py311-importlib-resources-6.5.2: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-kiwisolver-1.4.8,1... [pkg-builder.dan.net.uk] `-- Extracting py311-kiwisolver-1.4.8,1: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-pluggy-1.5.0... [pkg-builder.dan.net.uk] `-- Extracting py311-pluggy-1.5.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-pyparsing-3.2.3... [pkg-builder.dan.net.uk] `-- Extracting py311-pyparsing-3.2.3: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-python-dateutil-2.9.0... [pkg-builder.dan.net.uk] `-- Extracting py311-python-dateutil-2.9.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-tornado-6.4... [pkg-builder.dan.net.uk] `-- Extracting py311-tornado-6.4: .......... done [pkg-builder.dan.net.uk] `-- Installing qhull-8.0.2_3,1... [pkg-builder.dan.net.uk] `-- Extracting qhull-8.0.2_3,1: .......... done [pkg-builder.dan.net.uk] Extracting py311-matplotlib-3.8.0_1: .......... done ===> rdkit-2025.03.1 depends on package: py311-matplotlib>0 - found ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on package: py311-reportlab>0 - not found ===> Installing existing package /packages/All/py311-reportlab-4.4.0.pkg [pkg-builder.dan.net.uk] Installing py311-reportlab-4.4.0... [pkg-builder.dan.net.uk] `-- Installing adobe-cmaps-20051217_4... [pkg-builder.dan.net.uk] | `-- Installing mkfontscale-1.2.3... [pkg-builder.dan.net.uk] | | `-- Installing libfontenc-1.1.8... [pkg-builder.dan.net.uk] | | `-- Extracting libfontenc-1.1.8: ...... done [pkg-builder.dan.net.uk] | `-- Extracting mkfontscale-1.2.3: .... done [pkg-builder.dan.net.uk] `-- Extracting adobe-cmaps-20051217_4: .......... done [pkg-builder.dan.net.uk] Extracting py311-reportlab-4.4.0: .......... done ===> rdkit-2025.03.1 depends on package: py311-reportlab>0 - found ===> Returning to build of rdkit-2025.03.1 ===> rdkit-2025.03.1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for rdkit-2025.03.1 ===> Generating temporary packing list [ 50% 1/2] cd /wrkdirs/usr/ports/science/rdkit/work/.build/External/INCHI-API && /usr/local/bin/cmake -E copy /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/External/INCHI-API/python/noinchi.py /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_03_1/rdkit/Chem/inchi.py [ 50% 2/2] cd /wrkdirs/usr/ports/science/rdkit/work/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/SimDivFilters -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/SimDivFilters/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/SimDivFilters/SimilarityPickers.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/MLUtils -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/MLUtils/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/MLUtils/VoteImg.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/InfoTheory -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/InfoTheory/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/InfoTheory/entropy.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/InfoTheory/BitRank.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/InfoTheory/BitClusterer.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Scoring -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Scoring/Scoring.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Scoring/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/files.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data/Transforms.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data/Quantize.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data/DataUtils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data/MLData.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data/Stats.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data/FindQuantBounds.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data/SplitData.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/MatOps.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/Standardize.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/Murtagh.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/Butina.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/ClusterUtils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/Clusters.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/Resemblance.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/murtagh_test.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/ClusterVis.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Descriptors -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Descriptors/CompoundDescriptors.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Descriptors/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Descriptors/MoleculeDescriptors.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Descriptors/Descriptors.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Descriptors/Parser.py -- Installing: 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/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeometryLib.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeometryLib.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeometryLib.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeometryLib.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Grid3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/GridUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/point.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Transform2D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Transform3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Transform.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/UniformGrid3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/UniformRealValueGrid3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Utils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Geometry/rdGeometry.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Geometry/rdGeometry.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAlignment.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAlignment.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAlignment.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAlignment.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Alignment/AlignPoints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Numerics/rdAlignment.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Numerics/rdAlignment.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEigenSolvers.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEigenSolvers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEigenSolvers.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEigenSolvers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitOptimizer.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitOptimizer.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitOptimizer.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitOptimizer.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Optimizer/BFGSOpt.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Matrix.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/SquareMatrix.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/SymmMatrix.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Vector.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Conrec.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceField.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceField.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceField.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceField.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/Contrib.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/ForceField.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/AngleConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/AngleConstraints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/DistanceConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/DistanceConstraints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/PositionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/TorsionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/AngleBend.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/BondStretch.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Contribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/DistanceConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/AngleConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/TorsionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/PositionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Nonbonded.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Params.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Utils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Inversion.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Inversions.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/TorsionAngle.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/AngleBend.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/BondStretch.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/StretchBend.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/OopBend.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/TorsionAngle.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/Nonbonded.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/Contribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/DistanceConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/AngleConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/TorsionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/PositionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/Params.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ForceField/rdForceField.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ForceField/rdForceField.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeometry.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeometry.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeometry.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeometry.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/BoundsMatrix.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/ChiralSet.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/ChiralViolationContribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/DistGeomUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/DistViolationContribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/FourthDimContribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/TriangleSmooth.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/DistanceGeometry/DistGeom.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/DistanceGeometry/DistGeom.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCatalogs.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCatalogs.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCatalogs.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCatalogs.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Catalogs/CatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Catalogs/Catalog.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Catalogs/CatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGraphMol.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGraphMol.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGraphMol.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGraphMol.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Atom.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/atomic_data.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/AtomIterators.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Atropisomers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Bond.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/BondIterators.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Canon.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Chirality.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Conformer.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/details.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/GraphMol.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolPickler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/PeriodicTable.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/QueryAtom.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/QueryBond.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/QueryOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RDKitBase.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RDKitQueries.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Resonance.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RingInfo.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Rings.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ROMol.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RWMol.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SanitException.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstanceGroup.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/StereoGroup.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MonomerInfo.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/new_canon.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolBundle.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSmilesParse.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSmilesParse.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSmilesParse.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSmilesParse.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesParse.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/CanonicalizeStereoGroups.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesJSONParsers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDepictor.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDepictor.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDepictor.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDepictor.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Depictor/DepictUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Depictor/RDDepictor.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdDepictor.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdDepictor.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMarvinParser.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMarvinParser.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMarvinParser.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMarvinParser.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MarvinParse/MarvinParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFileParsers.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFileParsers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFileParsers.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFileParsers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/CDXMLParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/FileParsers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/FileParserUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/FileWriters.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolSupplier.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolSupplier.v1API.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolWriters.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/SequenceParsers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/SequenceWriters.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/GeneralFileReader.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MultithreadedMolSupplier.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MultithreadedSDMolSupplier.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/PNGParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructMatch.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructMatch.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructMatch.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructMatch.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Substruct/SubstructMatch.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Substruct/SubstructUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGenericGroups.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGenericGroups.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGenericGroups.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGenericGroups.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/GenericGroups/GenericGroups.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemReactions.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemReactions.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemReactions.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemReactions.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Reaction.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/Enumerate.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerateBase.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/CartesianProduct.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/RandomSample.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdChemReactions.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdChemReactions.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemTransforms.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemTransforms.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemTransforms.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemTransforms.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemTransforms/MolFragmenterJSONParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTautomerQuery.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTautomerQuery.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTautomerQuery.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTautomerQuery.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/TautomerQuery/TautomerQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdTautomerQuery.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdTautomerQuery.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubgraphs.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubgraphs.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubgraphs.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubgraphs.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Subgraphs/Subgraphs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFilterCatalog.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFilterCatalog.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFilterCatalog.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFilterCatalog.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdfiltercatalog.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdfiltercatalog.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFragCatalog.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFragCatalog.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFragCatalog.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFragCatalog.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdfragcatalog.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdfragcatalog.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDescriptors.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDescriptors.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDescriptors.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDescriptors.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/Crippen.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/BCUT.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/Lipinski.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolDescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolSurf.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MQN.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/Property.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/USRDescriptor.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/AtomFeat.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/OxidationNumbers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/DCLV.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolDescriptors3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/EEM.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/PBF.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/PMI.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/AUTOCORR3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/RDF.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MORSE.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/GETAWAY.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/WHIM.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/CoulombMat.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolDescriptors.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolDescriptors.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFingerprints.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFingerprints.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFingerprints.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFingerprints.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/AtomPairs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/Fingerprints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MACCS.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MHFP.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/FingerprintGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/AtomPairGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MorganGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/RDKitFPGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/TopologicalTorsionGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/FingerprintUtil.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdFingerprintGenerator.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdFingerprintGenerator.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMHFPFingerprint.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMHFPFingerprint.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPartialCharges.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPartialCharges.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPartialCharges.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPartialCharges.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdPartialCharges.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdPartialCharges.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolTransforms.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolTransforms.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolTransforms.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolTransforms.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolTransforms/MolTransforms.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolTransforms.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolTransforms.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceFieldHelpers.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceFieldHelpers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceFieldHelpers.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceFieldHelpers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/FFConvenience.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleContribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdForceFieldHelpers.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdForceFieldHelpers.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeomHelpers.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeomHelpers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeomHelpers.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeomHelpers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdDistGeom.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdDistGeom.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolAlign.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolAlign.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolAlign.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolAlign.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitO3AAlign.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitO3AAlign.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitO3AAlign.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitO3AAlign.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolAlign/AlignMolecules.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolAlign.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolAlign.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolChemicalFeatures.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolChemicalFeatures.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolChemicalFeatures.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolChemicalFeatures.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolChemicalFeatures.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolChemicalFeatures.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitShapeHelpers.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitShapeHelpers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitShapeHelpers.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitShapeHelpers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdShapeHelpers.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdShapeHelpers.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolCatalog.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolCatalog.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolCatalog.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolCatalog.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolCatalog/MolCatalog.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolCatalog.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolCatalog.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DJS.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DHelpers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FMCS/FMCS.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FMCS/Graph.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdFMCS.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdFMCS.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolHash/MolHash.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolHash/nmmolhash.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolHash.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolHash.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MMPA/MMPA.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMMPA.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMMPA.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRascalMCES.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRascalMCES.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRascalMCES.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRascalMCES.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RascalMCES/RascalMCES.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RascalMCES/RascalOptions.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RascalMCES/RascalClusterOptions.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RascalMCES/RascalResult.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdRascalMCES.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdRascalMCES.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSynthonSpaceSearch.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSynthonSpaceSearch.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSynthonSpaceSearch.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSynthonSpaceSearch.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpace.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSet.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/Synthon.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SearchResults.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceSearcher.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceSubstructureSearcher.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceFingerprintSearcher.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceRascalSearcher.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdSynthonSpaceSearch.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdSynthonSpaceSearch.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/CIPLabeler/CIPLabeler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/CIPLabeler/TooManyNodesException.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdCIPLabeler.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdCIPLabeler.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Deprotect/Deprotect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdDeprotect.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdDeprotect.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdReducedGraphs.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdReducedGraphs.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Trajectory/Snapshot.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Trajectory/Trajectory.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrarySerialization.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/PatternFactory.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdSubstructLibrary.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdSubstructLibrary.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecompParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecompJSONParsers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdRGroupDecomposition.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolInterchange/MolInterchange.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolInterchange/details.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolInterchange.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolInterchange.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNParse.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdSLNParse.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdSLNParse.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdchem.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdchem.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdmolops.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdmolops.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdqueries.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdqueries.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdmolfiles.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdmolfiles.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdtrajectory.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdtrajectory.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Pipeline.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Metal.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Normalize.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Validate.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Charge.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Tautomer.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Fragment.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ScaffoldNetwork/ScaffoldNetwork.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolEnumerator/MolEnumerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolEnumerator/LinkNode.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolEnumerator.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolEnumerator.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Abbreviations/Abbreviations.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdAbbreviations.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdAbbreviations.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGeneralizedSubstruct.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGeneralizedSubstruct.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGeneralizedSubstruct.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGeneralizedSubstruct.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/GeneralizedSubstruct/XQMol.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdGeneralizedSubstruct.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdGeneralizedSubstruct.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolProcessing.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolProcessing.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolProcessing.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolProcessing.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolProcessing/MolProcessing.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolProcessing.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolProcessing.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInteractionFields.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInteractionFields.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInteractionFields.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInteractionFields.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolInteractionFields/MIFDescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMIF.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMIF.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/AndQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/EqualityQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/GreaterQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/LessEqualQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/LessQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/NullQueryAlgebra.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/OrQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/Query.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/QueryObjects.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/RangeQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/SetQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/XOrQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Features/Feature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSimDivPickers.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSimDivPickers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSimDivPickers.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSimDivPickers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/DistPicker.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/LeaderPicker.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/MaxMinPicker.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKithc.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKithc.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKithc.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKithc.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/Clustering.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/Clustering.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data/cQuantize.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data/cQuantize.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1.2025.03.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1.2025.03.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdChemicalFeatures.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdChemicalFeatures.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/RDPaths.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkit/rdkit-targets.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkit/rdkit-targets-release.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkit/rdkit-config.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkit/rdkit-config-version.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkitpython/rdkitpython-targets.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkitpython/rdkitpython-targets-release.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkitpython/rdkitpython-config.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkitpython/rdkitpython-config-version.cmake ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-02T05:21:49+0000' 'PKG_NOTE_ports_top_git_hash=5529c5919b' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=d8e71b1111' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for rdkit-2025.03.1 ===> Building rdkit-2025.03.1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for rdkit-2025.03.1 build of science/rdkit | rdkit-2025.03.1 ended at Fri May 2 07:33:00 BST 2025 build time: 01:11:11