=>> Building biology/py-orange3-single-cell build started at Sat May 3 23:42:34 BST 2025 port directory: /usr/ports/biology/py-orange3-single-cell package name: py311-orange3-single-cell-0.8.2_6 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1572 Apr 30 08:35 /usr/ports/biology/py-orange3-single-cell/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: cee4ec23e8 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 03 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/03/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py311-orange3-single-cell-0.8.2_6: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/orange3-single-cell" EXAMPLESDIR="share/examples/orange3-single-cell" DATADIR="share/orange3-single-cell" WWWDIR="www/orange3-single-cell" ETCDIR="etc/orange3-single-cell" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/orange3-single-cell DOCSDIR=/usr/local/share/doc/orange3-single-cell EXAMPLESDIR=/usr/local/share/examples/orange3-single-cell WWWDIR=/usr/local/www/orange3-single-cell ETCDIR=/usr/local/etc/orange3-single-cell --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expired math/py-fastdtw and expiring misc/orange3. It is scheduled to be removed on or after 2025-06-01. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-orange3-single-cell-0.8.2_6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> py311-orange3-single-cell-0.8.2_6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-orange3-single-cell-0.8.2_6 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expired math/py-fastdtw and expiring misc/orange3. It is scheduled to be removed on or after 2025-06-01. ===> Fetching all distfiles required by py311-orange3-single-cell-0.8.2_6 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expired math/py-fastdtw and expiring misc/orange3. It is scheduled to be removed on or after 2025-06-01. ===> Fetching all distfiles required by py311-orange3-single-cell-0.8.2_6 for building => SHA256 Checksum OK for biolab-orange3-single-cell-0.8.2_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expired math/py-fastdtw and expiring misc/orange3. It is scheduled to be removed on or after 2025-06-01. ===> Fetching all distfiles required by py311-orange3-single-cell-0.8.2_6 for building ===> Extracting for py311-orange3-single-cell-0.8.2_6 => SHA256 Checksum OK for biolab-orange3-single-cell-0.8.2_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-orange3-single-cell-0.8.2_6 ===> Applying FreeBSD patches for py311-orange3-single-cell-0.8.2_6 from /usr/ports/biology/py-orange3-single-cell/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-orange3-single-cell-0.8.2_6 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg-builder.dan.net.uk] Installing gmake-4.4.1... [pkg-builder.dan.net.uk] `-- Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] `-- Extracting gettext-runtime-0.23.1: .......... done [pkg-builder.dan.net.uk] Extracting gmake-4.4.1: .......... done ===> py311-orange3-single-cell-0.8.2_6 depends on executable: gmake - found ===> Returning to build of py311-orange3-single-cell-0.8.2_6 ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-sphinx>=0,1 - not found ===> Installing existing package /packages/All/py311-sphinx-5.3.0_3,1.pkg [pkg-builder.dan.net.uk] Installing py311-sphinx-5.3.0_3,1... [pkg-builder.dan.net.uk] `-- Installing ca_root_nss-3.108... [pkg-builder.dan.net.uk] `-- Extracting ca_root_nss-3.108: .... done Scanning /usr/share/certs/untrusted for certificates... Scanning /usr/share/certs/trusted for certificates... Scanning /usr/local/share/certs for certificates... [pkg-builder.dan.net.uk] `-- Installing py311-Babel-2.17.0_1... [pkg-builder.dan.net.uk] | `-- Installing python311-3.11.12... [pkg-builder.dan.net.uk] | | `-- Installing libffi-3.4.8... [pkg-builder.dan.net.uk] | | `-- Extracting libffi-3.4.8: .......... done [pkg-builder.dan.net.uk] | | `-- Installing mpdecimal-4.0.0... [pkg-builder.dan.net.uk] | | `-- Extracting mpdecimal-4.0.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] | | `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing readline-8.2.13_2... [pkg-builder.dan.net.uk] | | `-- Extracting readline-8.2.13_2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting python311-3.11.12: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-Babel-2.17.0_1: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-Jinja2-3.1.6... [pkg-builder.dan.net.uk] | `-- Installing py311-markupsafe-2.1.5_1... 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[pkg-builder.dan.net.uk] | | | `-- Extracting py311-pycparser-2.22: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py311-cffi-1.17.1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py311-cryptography-44.0.2,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-openssl-25.0.0_1,1... [pkg-builder.dan.net.uk] | | `-- Installing py311-typing-extensions-4.13.2... [pkg-builder.dan.net.uk] | | `-- Extracting py311-typing-extensions-4.13.2: ....... done [pkg-builder.dan.net.uk] | | `-- Extracting py311-openssl-25.0.0_1,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py311-urllib3-1.26.20,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-requests-2.32.3: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-snowballstemmer-2.2.0_1... [pkg-builder.dan.net.uk] | `-- Installing py311-pystemmer-2.0.1_1... [pkg-builder.dan.net.uk] | `-- Extracting py311-pystemmer-2.0.1_1: ..... done [pkg-builder.dan.net.uk] `-- Extracting py311-snowballstemmer-2.2.0_1: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-sphinxcontrib-applehelp-2.0.0... [pkg-builder.dan.net.uk] `-- Extracting py311-sphinxcontrib-applehelp-2.0.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-sphinxcontrib-devhelp-2.0.0... [pkg-builder.dan.net.uk] `-- Extracting py311-sphinxcontrib-devhelp-2.0.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-sphinxcontrib-htmlhelp-2.1.0... [pkg-builder.dan.net.uk] `-- Extracting py311-sphinxcontrib-htmlhelp-2.1.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-sphinxcontrib-jsmath-1.0.1_1... [pkg-builder.dan.net.uk] `-- Extracting py311-sphinxcontrib-jsmath-1.0.1_1: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-sphinxcontrib-qthelp-2.0.0... [pkg-builder.dan.net.uk] `-- Extracting py311-sphinxcontrib-qthelp-2.0.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-sphinxcontrib-serializinghtml-2.0.0... [pkg-builder.dan.net.uk] `-- Extracting py311-sphinxcontrib-serializinghtml-2.0.0: .......... done [pkg-builder.dan.net.uk] Extracting py311-sphinx-5.3.0_3,1: .......... done ===== Message from ca_root_nss-3.108: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificate discovery for software that either uses other cryptographic libraries than OpenSSL, or use OpenSSL but do not follow recommended practice. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===== Message from python311-3.11.12: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===== Message from py311-urllib3-1.26.20,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-sphinx>=0,1 - found ===> Returning to build of py311-orange3-single-cell-0.8.2_6 ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg-builder.dan.net.uk] Installing py311-setuptools-63.1.0_3... [pkg-builder.dan.net.uk] Extracting py311-setuptools-63.1.0_3: .......... done ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-orange3-single-cell-0.8.2_6 ===> py311-orange3-single-cell-0.8.2_6 depends on file: /usr/local/bin/python3.11 - found ===> py311-orange3-single-cell-0.8.2_6 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-orange3-single-cell-0.8.2_6 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-orange3-single-cell-0.8.2_6 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-orange3-single-cell-0.8.2_6 Warning: 'keywords' should be a list, got type 'tuple' /usr/local/lib/python3.11/site-packages/setuptools/dist.py:286: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated, consider using implicit namespaces instead (PEP 420). warnings.warn(msg, SetuptoolsDeprecationWarning) running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-orange3-single-cell-0.8.2_6 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/orange3-single-cell-0.8.2/doc' /usr/local/bin/sphinx-build-3.11 -b html -d build/doctrees . build/html Running Sphinx v5.3.0 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). making output directory... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 8 source files that are out of date updating environment: [new config] 8 added, 0 changed, 0 removed reading sources... [ 12%] index reading sources... [ 25%] widgets/filter reading sources... [ 37%] widgets/louvain reading sources... [ 50%] widgets/normalize reading sources... [ 62%] widgets/scorecells reading sources... [ 75%] widgets/scoregenes reading sources... [ 87%] widgets/singlecelldatasets reading sources... [100%] widgets/tsne looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 12%] index writing output... [ 25%] widgets/filter writing output... [ 37%] widgets/louvain writing output... [ 50%] widgets/normalize writing output... [ 62%] widgets/scorecells writing output... [ 75%] widgets/scoregenes writing output... [ 87%] widgets/singlecelldatasets writing output... [100%] widgets/tsne generating indices... genindex done writing additional pages... search done copying images... [ 10%] widgets/images/Filter-stamped.png copying images... [ 20%] widgets/images/Filter-Example.png copying images... [ 30%] widgets/images/LouvainClustering-stamped.png copying images... [ 40%] widgets/images/LouvainClustering-Example.png copying images... [ 50%] widgets/images/Normalize-stamped.png copying images... [ 60%] widgets/images/ScoreCells-stamped.png copying images... [ 70%] widgets/images/tSNE-Example.png copying images... [ 80%] widgets/images/ScoreGenes-stamped.png copying images... [ 90%] widgets/images/SingleCellDatasets-stamped.png copying images... [100%] widgets/images/tSNE-stamped.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in build/html. Build finished. The HTML pages are in build/html. /usr/local/bin/sphinx-build-3.11 -b htmlhelp -d build/doctrees . build/htmlhelp Running Sphinx v5.3.0 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). making output directory... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [htmlhelp]: targets for 8 source files that are out of date updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found preparing documents... done writing output... [ 12%] index writing output... [ 25%] widgets/filter writing output... [ 37%] widgets/louvain writing output... [ 50%] widgets/normalize writing output... [ 62%] widgets/scorecells writing output... [ 75%] widgets/scoregenes writing output... [ 87%] widgets/singlecelldatasets writing output... [100%] widgets/tsne generating indices... genindex done writing additional pages... done copying images... [ 10%] widgets/images/Filter-stamped.png copying images... [ 20%] widgets/images/Filter-Example.png copying images... [ 30%] widgets/images/LouvainClustering-stamped.png copying images... [ 40%] widgets/images/LouvainClustering-Example.png copying images... [ 50%] widgets/images/Normalize-stamped.png copying images... [ 60%] widgets/images/ScoreCells-stamped.png copying images... [ 70%] widgets/images/tSNE-Example.png copying images... [ 80%] widgets/images/ScoreGenes-stamped.png copying images... [ 90%] widgets/images/SingleCellDatasets-stamped.png copying images... [100%] widgets/images/tSNE-stamped.png copying static files... done copying extra files... done copying stopword list... done writing project file... done writing TOC file... done writing index file... build succeeded, 1 warning. You can now run HTML Help Workshop with the .htp file in build/htmlhelp. Build finished; now you can run HTML Help Workshop with the .hhp project file in build/htmlhelp. gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/orange3-single-cell-0.8.2/doc' Warning: 'keywords' should be a list, got type 'tuple' /usr/local/lib/python3.11/site-packages/setuptools/dist.py:286: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated, consider using implicit namespaces instead (PEP 420). warnings.warn(msg, SetuptoolsDeprecationWarning) running build running build_py creating build creating build/lib creating build/lib/orangecontrib copying orangecontrib/__init__.py -> build/lib/orangecontrib creating build/lib/orangecontrib/single_cell copying orangecontrib/single_cell/reader.py -> build/lib/orangecontrib/single_cell copying orangecontrib/single_cell/__main__.py -> build/lib/orangecontrib/single_cell copying orangecontrib/single_cell/__init__.py -> build/lib/orangecontrib/single_cell creating build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/__init__.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscoregenes.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/contingency_table.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owaligndatasets.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscorecells.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owloaddata.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owmarkergenes.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owdotmatrix.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owmultisample.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owfilter.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscdatasets.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owbatchnorm.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owtsne.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscpreprocess.py -> build/lib/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/load_data.py -> build/lib/orangecontrib/single_cell/widgets creating build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owscoregenes.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owaligndatasets.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/__init__.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owtsne.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owscpreprocess.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owbatchnorm.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/owscorecells.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_load_data.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owdatasets.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owmarkergenes.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owloaddata.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owfilter.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owmultisample.py -> build/lib/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owgenerank.py -> build/lib/orangecontrib/single_cell/tests creating build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/__init__.py -> build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/biweight.py -> build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/scpreprocess.py -> build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/cca.py -> build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/clusteranalysis.py -> build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/alignment.py -> build/lib/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/scbnorm.py -> build/lib/orangecontrib/single_cell/preprocess creating build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/__init__.py -> build/lib/orangecontrib/single_cell/tutorials creating build/lib/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/welcome.py -> build/lib/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/__init__.py -> build/lib/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/iconview.py -> build/lib/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/update_check.py -> build/lib/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/config.py -> build/lib/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/splash.py -> build/lib/orangecontrib/single_cell/launcher creating build/lib/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/__init__.py -> build/lib/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_scpreprocess.py -> build/lib/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_alignment.py -> build/lib/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_cca.py -> build/lib/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_scbnorm.py -> build/lib/orangecontrib/single_cell/tests/preprocess running egg_info creating Orange3_SingleCell.egg-info writing Orange3_SingleCell.egg-info/PKG-INFO writing dependency_links to Orange3_SingleCell.egg-info/dependency_links.txt writing entry points to Orange3_SingleCell.egg-info/entry_points.txt writing namespace_packages to Orange3_SingleCell.egg-info/namespace_packages.txt writing requirements to Orange3_SingleCell.egg-info/requires.txt writing top-level names to Orange3_SingleCell.egg-info/top_level.txt writing manifest file 'Orange3_SingleCell.egg-info/SOURCES.txt' reading manifest file 'Orange3_SingleCell.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.tab.gz' under directory 'orangecontrib/single_cell/tutorials' warning: no files found matching '*.tab' under directory 'orangecontrib/single_cell/tutorials' adding license file 'LICENSE' writing manifest file 'Orange3_SingleCell.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'orangecontrib.single_cell.launcher.icons' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'orangecontrib.single_cell.launcher.icons' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'orangecontrib.single_cell.launcher.icons' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'orangecontrib.single_cell.launcher.icons' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'orangecontrib.single_cell.tests.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'orangecontrib.single_cell.tests.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'orangecontrib.single_cell.tests.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'orangecontrib.single_cell.tests.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'orangecontrib.single_cell.widgets.icons' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'orangecontrib.single_cell.widgets.icons' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'orangecontrib.single_cell.widgets.icons' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'orangecontrib.single_cell.widgets.icons' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/AlignDatasets.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/BatchEffectRemoval.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Binarize.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/DotMatrix.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Filter.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/LoadData.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/LogarithmicScale.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/MarkerGenes.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/MultiSample.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Normalize.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Rank.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/ScoreCells.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/ScoreGenes.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/SelectGenes.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/SingleCellDatasets.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/SingleCellPreprocess.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Standardize.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/TSNE.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/VCFFile.svg -> build/lib/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/category.svg -> build/lib/orangecontrib/single_cell/widgets/icons creating build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/DATA_MATRIX_LOG_TPM.txt -> build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.loom -> build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.pkl -> build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.txt.gz -> build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.xlsx -> build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/lib.cell.count -> build/lib/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/lib.cell.meta -> build/lib/orangecontrib/single_cell/tests/data creating build/lib/orangecontrib/single_cell/tests/data/10x creating build/lib/orangecontrib/single_cell/tests/data/10x/hg19 copying orangecontrib/single_cell/tests/data/10x/hg19/barcodes.tsv -> build/lib/orangecontrib/single_cell/tests/data/10x/hg19 copying orangecontrib/single_cell/tests/data/10x/hg19/genes.tsv -> build/lib/orangecontrib/single_cell/tests/data/10x/hg19 copying orangecontrib/single_cell/tests/data/10x/hg19/matrix.mtx -> build/lib/orangecontrib/single_cell/tests/data/10x/hg19 creating build/lib/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/tests/data/10x/mm10/barcodes.tsv -> build/lib/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/tests/data/10x/mm10/genes.tsv -> build/lib/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/tests/data/10x/mm10/matrix.mtx -> build/lib/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM.ows -> build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/020-Showcase-Markers.ows -> build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/030-Showcase-Clustering.ows -> build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/040-Showcase-RegrBatchEffects.ows -> build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/050-Showcase-DatasetAlignment.ows -> build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/053-Showcase-DataSetPreprocessingAlignment.ows -> build/lib/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/060-Showcase-StagePrediction.ows -> build/lib/orangecontrib/single_cell/tutorials creating build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data creating build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A/barcodes.tsv -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A/genes.tsv -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A/matrix.mtx -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A creating build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B/barcodes.tsv -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B/genes.tsv -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B/matrix.mtx -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B creating build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C/barcodes.tsv -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C/genes.tsv -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C/matrix.mtx -> build/lib/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C creating build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/Biomarkers.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/BiomarkersColor.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/CellTypeDiscovery.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/CellTypeDiscoveryColor.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/PopulationPrediction.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/PopulationPredictionColor.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/Templates.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/Welcome.svg -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/getting-started-video-tutorials.png -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/splash.png -> build/lib/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/welcome-background.png -> build/lib/orangecontrib/single_cell/launcher/icons =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-orange3-single-cell-0.8.2_6 depends on package: orange3>0 - not found ===> Installing existing package /packages/All/orange3-3.29.1_6.pkg [pkg-builder.dan.net.uk] Installing orange3-3.29.1_6... [pkg-builder.dan.net.uk] `-- Installing py311-AnyQt-0.1.1_1... [pkg-builder.dan.net.uk] `-- Extracting py311-AnyQt-0.1.1_1: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-PyOpenGL-3.1.7_1... [pkg-builder.dan.net.uk] | `-- Installing freeglut-3.2.1... [pkg-builder.dan.net.uk] | | `-- Installing libGLU-9.0.3... [pkg-builder.dan.net.uk] | | `-- Installing libglvnd-1.7.0... [pkg-builder.dan.net.uk] | | | `-- Installing libX11-1.8.12,1... [pkg-builder.dan.net.uk] | | | `-- Installing libxcb-1.17.0... [pkg-builder.dan.net.uk] | | | | `-- Installing libXau-1.0.11... [pkg-builder.dan.net.uk] | | | | `-- Extracting libXau-1.0.11: .......... done [pkg-builder.dan.net.uk] | | | | `-- Installing libXdmcp-1.1.5... [pkg-builder.dan.net.uk] | | | | `-- Installing xorgproto-2024.1... 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[pkg-builder.dan.net.uk] | | | `-- Extracting liblz4-1.10.0,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting zstd-1.5.7: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting binutils-2.44,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | | `-- Installing mpfr-4.2.2,1... [pkg-builder.dan.net.uk] | | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] | | `-- Extracting gcc13-13.3.0_2: .......... done create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) [pkg-builder.dan.net.uk] | | `-- Installing openblas-0.3.29_1,2... 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[pkg-builder.dan.net.uk] | | | `-- Extracting libSM-1.2.6,1: ........ done ===> Creating groups Creating group 'messagebus' with gid '556' ===> Creating users Creating user 'messagebus' with uid '556' [pkg-builder.dan.net.uk] | | | `-- Extracting dbus-1.16.2_2,1: ......... done [pkg-builder.dan.net.uk] | | `-- Extracting dbus-glib-0.114: .......... done [pkg-builder.dan.net.uk] | | `-- Installing pydbus-common-1.3.2... [pkg-builder.dan.net.uk] | | `-- Extracting pydbus-common-1.3.2: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py311-dbus-1.3.2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-jeepney-0.9.0... [pkg-builder.dan.net.uk] | | `-- Extracting py311-jeepney-0.9.0: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py311-SecretStorage-3.3.3: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-jaraco.classes-3.4.0... [pkg-builder.dan.net.uk] | | `-- Installing py311-more-itertools-10.6.0... 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[pkg-builder.dan.net.uk] | `-- Extracting py311-scikit-sparse-0.4.16: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-networkx-3.4,2: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-openTSNE-1.0.2... [pkg-builder.dan.net.uk] | `-- Installing fftw3-3.3.10_5... [pkg-builder.dan.net.uk] | `-- Extracting fftw3-3.3.10_5: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-scikit-learn-1.4.0_1... [pkg-builder.dan.net.uk] | | `-- Installing py311-threadpoolctl-3.6.0... [pkg-builder.dan.net.uk] | | `-- Extracting py311-threadpoolctl-3.6.0: ....... done [pkg-builder.dan.net.uk] | `-- Extracting py311-scikit-learn-1.4.0_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-openTSNE-1.0.2: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-openpyxl-3.1.1_1... [pkg-builder.dan.net.uk] | `-- Installing py311-et_xmlfile-1.1.0_1... 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[pkg-builder.dan.net.uk] | | | | `-- Extracting qt5-sqldrivers-sqlite3-5.15.16p130: .. done [pkg-builder.dan.net.uk] | | | `-- Extracting qt5-help-5.15.16p3_1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing qt5-printsupport-5.15.16p130_1... [pkg-builder.dan.net.uk] | | | | `-- Installing cups-2.4.11_1... [pkg-builder.dan.net.uk] | | | | `-- Installing avahi-app-0.8_6... [pkg-builder.dan.net.uk] | | | | | `-- Installing gdbm-1.25... [pkg-builder.dan.net.uk] | | | | | `-- Extracting gdbm-1.25: .......... done [pkg-builder.dan.net.uk] | | | | | `-- Installing gnome_subr-1.0... [pkg-builder.dan.net.uk] | | | | | `-- Extracting gnome_subr-1.0: . done [pkg-builder.dan.net.uk] | | | | | `-- Installing libdaemon-0.14_1... [pkg-builder.dan.net.uk] | | | | | `-- Extracting libdaemon-0.14_1: .......... done [pkg-builder.dan.net.uk] | | | | | `-- Installing libevent-2.1.12... [pkg-builder.dan.net.uk] | | | | | `-- Extracting libevent-2.1.12: .......... done ===> Creating groups Creating group 'avahi' with gid '558' ===> Creating users Creating user 'avahi' with uid '558' [pkg-builder.dan.net.uk] | | | | `-- Extracting avahi-app-0.8_6: .......... done [pkg-builder.dan.net.uk] | | | | `-- Installing libpaper-1.1.28_1... [pkg-builder.dan.net.uk] | | | | `-- Extracting libpaper-1.1.28_1: .......... done ===> Creating groups Creating group 'cups' with gid '193' ===> Creating users Creating user 'cups' with uid '193' [pkg-builder.dan.net.uk] | | | | `-- Extracting cups-2.4.11_1: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting qt5-printsupport-5.15.16p130_1: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting qt5-assistant-5.15.16p3: ... done [pkg-builder.dan.net.uk] | | | `-- Installing qt5-uiplugin-5.15.16p3... 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[pkg-builder.dan.net.uk] | | | `-- Extracting iso-codes-4.15.0: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libdrm-2.4.123,1... [pkg-builder.dan.net.uk] | | | | `-- Installing libpciaccess-0.18.1_1... [pkg-builder.dan.net.uk] | | | | `-- Installing hwdata-0.394,1... [pkg-builder.dan.net.uk] | | | | `-- Extracting hwdata-0.394,1: ...... done [pkg-builder.dan.net.uk] | | | | `-- Extracting libpciaccess-0.18.1_1: ..... done [pkg-builder.dan.net.uk] | | | `-- Extracting libdrm-2.4.123,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing orc-0.4.41... [pkg-builder.dan.net.uk] | | | `-- Extracting orc-0.4.41: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting gstreamer1-plugins-1.26.0: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing gstreamer1-plugins-bad-1.26.0... [pkg-builder.dan.net.uk] | | | `-- Installing json-glib-1.10.6... [pkg-builder.dan.net.uk] | | | | `-- Installing gobject-introspection-1.84.0,1... [pkg-builder.dan.net.uk] | | | | `-- Extracting gobject-introspection-1.84.0,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting json-glib-1.10.6: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting gstreamer1-plugins-bad-1.26.0: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libXv-1.0.12_1,1... [pkg-builder.dan.net.uk] | | | `-- Extracting libXv-1.0.12_1,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing openal-soft-1.24.2_2... [pkg-builder.dan.net.uk] | | | `-- Installing libmysofa-1.3.3... [pkg-builder.dan.net.uk] | | | `-- Extracting libmysofa-1.3.3: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting openal-soft-1.24.2_2: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing qt5-opengl-5.15.16p130_1... [pkg-builder.dan.net.uk] | | | `-- Extracting qt5-opengl-5.15.16p130_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting qt5-multimedia-5.15.16p2_2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing qt5-quick3d-5.15.16p1_1... [pkg-builder.dan.net.uk] | | | `-- Installing assimp-5.4.3... [pkg-builder.dan.net.uk] | | | `-- Extracting assimp-5.4.3: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting qt5-quick3d-5.15.16p1_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing qt5-remoteobjects-5.15.16p0_1... [pkg-builder.dan.net.uk] | | `-- Extracting qt5-remoteobjects-5.15.16p0_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing qt5-sensors-5.15.16p0_1... [pkg-builder.dan.net.uk] | | `-- Extracting qt5-sensors-5.15.16p0_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing qt5-speech-5.15.16p1_1... [pkg-builder.dan.net.uk] | | | `-- Installing speech-dispatcher-0.12.0... [pkg-builder.dan.net.uk] | | | `-- Installing dotconf-1.4.1_1... [pkg-builder.dan.net.uk] | | | `-- Extracting dotconf-1.4.1_1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing espeak-ng-1.52.0... [pkg-builder.dan.net.uk] | | | | `-- Installing pcaudiolib-1.2_2... [pkg-builder.dan.net.uk] | | | | `-- Extracting pcaudiolib-1.2_2: ..... done [pkg-builder.dan.net.uk] | | | `-- Extracting espeak-ng-1.52.0: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libsndfile-1.2.2_2... [pkg-builder.dan.net.uk] | | | | `-- Installing flac-1.5.0,1... [pkg-builder.dan.net.uk] | | | | `-- Installing libogg-1.3.5,4... [pkg-builder.dan.net.uk] | | | | `-- Extracting libogg-1.3.5,4: .......... done [pkg-builder.dan.net.uk] | | | | `-- Extracting flac-1.5.0,1: .......... done [pkg-builder.dan.net.uk] | | | | `-- Installing lame-3.100_5... [pkg-builder.dan.net.uk] | | | | `-- Extracting lame-3.100_5: .......... done [pkg-builder.dan.net.uk] | | | | `-- Installing libvorbis-1.3.7_2,3... [pkg-builder.dan.net.uk] | | | | `-- Extracting libvorbis-1.3.7_2,3: .......... done [pkg-builder.dan.net.uk] | | | | `-- Installing mpg123-1.32.10... [pkg-builder.dan.net.uk] | | | | `-- Extracting mpg123-1.32.10: .......... done [pkg-builder.dan.net.uk] | | | | `-- Installing opus-1.5.2... [pkg-builder.dan.net.uk] | | | | `-- Extracting opus-1.5.2: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting libsndfile-1.2.2_2: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting speech-dispatcher-0.12.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting qt5-speech-5.15.16p1_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing qt5-svg-5.15.16p5_1... [pkg-builder.dan.net.uk] | | `-- Extracting qt5-svg-5.15.16p5_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing qt5-testlib-5.15.16p130_1... [pkg-builder.dan.net.uk] | | `-- Extracting qt5-testlib-5.15.16p130_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing qt5-webchannel-5.15.16p3_1... [pkg-builder.dan.net.uk] | | `-- Extracting qt5-webchannel-5.15.16p3_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing qt5-websockets-5.15.16p2_1... [pkg-builder.dan.net.uk] | | `-- Extracting qt5-websockets-5.15.16p2_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing qt5-x11extras-5.15.16p0_1... [pkg-builder.dan.net.uk] | | `-- Extracting qt5-x11extras-5.15.16p0_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing qt5-xmlpatterns-5.15.16p0_1... [pkg-builder.dan.net.uk] | | `-- Extracting qt5-xmlpatterns-5.15.16p0_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py311-qt5-pyqt-5.15.11_1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py311-pyqtgraph-0.13.7_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-orange-widget-base-4.13.0_3: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-python-louvain-0.16_2... [pkg-builder.dan.net.uk] `-- Extracting py311-python-louvain-0.16_2: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-qt5-webengine-5.15.7... [pkg-builder.dan.net.uk] | `-- Installing qt5-webengine-5.15.18p7_1... [pkg-builder.dan.net.uk] | | `-- Installing ffmpeg-6.1.2_11,1... [pkg-builder.dan.net.uk] | | `-- Installing dav1d-1.5.1... [pkg-builder.dan.net.uk] | | `-- Extracting dav1d-1.5.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing fdk-aac-2.0.3... [pkg-builder.dan.net.uk] | | `-- Extracting fdk-aac-2.0.3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gsm-1.0.22_1... [pkg-builder.dan.net.uk] | | `-- Extracting gsm-1.0.22_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libbluray-1.3.4,1... [pkg-builder.dan.net.uk] | | `-- Extracting libbluray-1.3.4,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libcdio-paranoia-10.2+2.0.2... [pkg-builder.dan.net.uk] | | | `-- Installing libcdio-2.2.0... [pkg-builder.dan.net.uk] | | | `-- Extracting libcdio-2.2.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libcdio-paranoia-10.2+2.0.2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libjxl-0.11.1_1... [pkg-builder.dan.net.uk] | | | `-- Installing gdk-pixbuf2-2.42.12_1... [pkg-builder.dan.net.uk] | | | `-- Installing shared-mime-info-2.4_1... [pkg-builder.dan.net.uk] | | | `-- Extracting shared-mime-info-2.4_1: ......... done [pkg-builder.dan.net.uk] | | | `-- Extracting gdk-pixbuf2-2.42.12_1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing highway-1.2.0... [pkg-builder.dan.net.uk] | | | `-- Extracting highway-1.2.0: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing openexr-3.3.3... [pkg-builder.dan.net.uk] | | | `-- Installing Imath-3.1.12... [pkg-builder.dan.net.uk] | | | `-- Extracting Imath-3.1.12: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting openexr-3.3.3: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libjxl-0.11.1_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libplacebo-7.349.0_1... [pkg-builder.dan.net.uk] | | | `-- Installing shaderc-2025.2_1... [pkg-builder.dan.net.uk] | | | `-- Extracting shaderc-2025.2_1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing vulkan-loader-1.4.313... [pkg-builder.dan.net.uk] | | | `-- Extracting vulkan-loader-1.4.313: ....... done [pkg-builder.dan.net.uk] | | | `-- Installing xxhash-0.8.3... [pkg-builder.dan.net.uk] | | | `-- Extracting xxhash-0.8.3: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libplacebo-7.349.0_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libtheora-1.1.1_7... [pkg-builder.dan.net.uk] | | `-- Extracting libtheora-1.1.1_7: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libv4l-1.23.0_5... [pkg-builder.dan.net.uk] | | `-- Extracting libv4l-1.23.0_5: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libva-2.22.0... [pkg-builder.dan.net.uk] | | `-- Extracting libva-2.22.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libvdpau-1.5... [pkg-builder.dan.net.uk] | | `-- Extracting libvdpau-1.5: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libvpx-1.15.1... [pkg-builder.dan.net.uk] | | `-- Extracting libvpx-1.15.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libx264-0.164.3095... [pkg-builder.dan.net.uk] | | `-- Extracting libx264-0.164.3095: ...... done [pkg-builder.dan.net.uk] | | `-- Installing openh264-2.3.0,2... [pkg-builder.dan.net.uk] | | `-- Extracting openh264-2.3.0,2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing speex-1.2.1_1,1... [pkg-builder.dan.net.uk] | | | `-- Installing speexdsp-1.2.1... [pkg-builder.dan.net.uk] | | | `-- Extracting speexdsp-1.2.1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting speex-1.2.1_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing svt-av1-3.0.2... [pkg-builder.dan.net.uk] | | `-- Extracting svt-av1-3.0.2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing vmaf-3.0.0... [pkg-builder.dan.net.uk] | | `-- Extracting vmaf-3.0.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing x265-3.6_1... [pkg-builder.dan.net.uk] | | | `-- Installing svt-hevc-1.5.1_1... [pkg-builder.dan.net.uk] | | | `-- Extracting svt-hevc-1.5.1_1: ....... done [pkg-builder.dan.net.uk] | | `-- Extracting x265-3.6_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing xvid-1.3.7,1... [pkg-builder.dan.net.uk] | | `-- Extracting xvid-1.3.7,1: ..... done [pkg-builder.dan.net.uk] | | `-- Extracting ffmpeg-6.1.2_11,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing jsoncpp-1.9.6_1... [pkg-builder.dan.net.uk] | | `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXcomposite-0.4.6_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting libXcomposite-0.4.6_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXcursor-1.2.2... [pkg-builder.dan.net.uk] | | `-- Extracting libXcursor-1.2.2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXdamage-1.1.6... [pkg-builder.dan.net.uk] | | `-- Extracting libXdamage-1.1.6: ...... done [pkg-builder.dan.net.uk] | | `-- Installing libXtst-1.2.4... [pkg-builder.dan.net.uk] | | `-- Extracting libXtst-1.2.4: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libpci-3.13.0... [pkg-builder.dan.net.uk] | | `-- Installing pciids-20250415... [pkg-builder.dan.net.uk] | | `-- Extracting pciids-20250415: . done [pkg-builder.dan.net.uk] | | `-- Extracting libpci-3.13.0: ......... done [pkg-builder.dan.net.uk] | | `-- Installing libxkbfile-1.1.3... [pkg-builder.dan.net.uk] | | `-- Extracting libxkbfile-1.1.3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing re2-20240702_1... [pkg-builder.dan.net.uk] | | `-- Installing abseil-20250127.0... [pkg-builder.dan.net.uk] | | `-- Extracting abseil-20250127.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting re2-20240702_1: ......... done [pkg-builder.dan.net.uk] | | `-- Installing snappy-1.2.2... [pkg-builder.dan.net.uk] | | `-- Extracting snappy-1.2.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting qt5-webengine-5.15.18p7_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-qt5-webengine-5.15.7: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-serverfiles-0.3.1_1... [pkg-builder.dan.net.uk] `-- Extracting py311-serverfiles-0.3.1_1: ......... done [pkg-builder.dan.net.uk] `-- Installing py311-xlrd-2.0.1_1... [pkg-builder.dan.net.uk] `-- Extracting py311-xlrd-2.0.1_1: .......... done [pkg-builder.dan.net.uk] Extracting orange3-3.29.1_6: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gdk-pixbuf-query-loaders.ucl Generating gdk-pixbuf modules cache ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ==> Running trigger: shared-mime-info.ucl Building the Shared MIME-Info database cache ===== Message from freeglut-3.2.1: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. ===== Message from gcc13-13.3.0_2: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from freetype2-2.13.3: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from libimagequant-4.3.4_2: -- ===> NOTICE: The libimagequant port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from libinotify-20240724_1: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from boost-libs-1.87.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===== Message from postgresql16-client-16.8_1: -- The PostgreSQL port has a collection of "side orders": postgresql-docs For all of the html documentation p5-Pg A perl5 API for client access to PostgreSQL databases. postgresql-tcltk If you want tcl/tk client support. postgresql-jdbc For Java JDBC support. postgresql-odbc For client access from unix applications using ODBC as access method. Not needed to access unix PostgreSQL servers from Win32 using ODBC. See below. ruby-postgres, py-psycopg For client access to PostgreSQL databases using the ruby & python languages. postgresql-plperl, postgresql-pltcl & postgresql-plruby For using perl5, tcl & ruby as procedural languages. postgresql-contrib Lots of contributed utilities, postgresql functions and datatypes. There you find pg_standby, pgcrypto and many other cool things. etc... ===== Message from py311-pandas-2.2.3,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. ===== Message from py311-dictdiffer-0.9.0_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expired devel/py-pytest-runner. It is scheduled to be removed on or after 2025-03-31. ===== Message from py311-pip-23.3.2_4: -- pip MUST ONLY be used: * With the --user flag, OR * To install or manage Python packages in virtual environments Failure to follow this warning can and will result in an inconsistent system-wide Python environment (LOCALBASE/lib/pythonX.Y/site-packages) and cause errors. Avoid using pip as root unless you know what you're doing. ===== Message from py311-orange-canvas-core-0.1.20_2: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expired misc/py-dictdiffer. It is scheduled to be removed on or after 2025-06-21. ===== Message from wayland-1.23.1: -- Wayland requires XDG_RUNTIME_DIR to be defined to a path that will contain "wayland-%d" unix(4) sockets. This is usually handled by consolekit2 (via ck-launch-session) or pam_xdg (via login). ===== Message from libxkbcommon-1.8.1_2: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg ===== Message from dejavu-2.37_3: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from qt5-sql-5.15.16p130_1: -- To enable Qt database support, install the database plugin ports. The following plugin ports are available: - databases/qt5-sqldrivers-mysql MySQL - databases/qt5-sqldrivers-odbc Open Database Connectivity - databases/qt5-sqldrivers-pgsql PostgreSQL - databases/qt5-sqldrivers-sqlite2 SQLite 2 - databases/qt5-sqldrivers-sqlite3 SQLite 3 - databases/qt5-sqldrivers-tds FreeTDS ===== Message from alsa-plugins-1.2.12_1: -- ===> NOTICE: The alsa-plugins port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from py311-orange-widget-base-4.13.0_3: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expiring devel/py-orange-canvas-core. It is scheduled to be removed on or after 2025-06-21. ===== Message from gsm-1.0.22_1: -- ===> NOTICE: The gsm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from libjxl-0.11.1_1: -- Additional packages recommended for new users: - imlib2-jxl (e.g., feh, scrot) - kf5-kimageformats (e.g., nomacs, flameshot, skanlite) - gimp-jxl-plugin ===== Message from svt-hevc-1.5.1_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Project discontinued. ===== Message from orange3-3.29.1_6: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expiring devel/py-orange-canvas-core. It is scheduled to be removed on or after 2025-06-21. ===> py311-orange3-single-cell-0.8.2_6 depends on package: orange3>0 - found ===> Returning to build of py311-orange3-single-cell-0.8.2_6 ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-orange3-bioinformatics>0 - not found ===> Installing existing package /packages/All/py311-orange3-bioinformatics-4.8.4_1.pkg [pkg-builder.dan.net.uk] Installing py311-orange3-bioinformatics-4.8.4_1... [pkg-builder.dan.net.uk] `-- Installing py311-Genesis-PyAPI-1.2.1_1... [pkg-builder.dan.net.uk] | `-- Installing py311-slumber-0.7.1_2... [pkg-builder.dan.net.uk] | `-- Extracting py311-slumber-0.7.1_2: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-Genesis-PyAPI-1.2.1_1: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-point-annotator-2.0.0_2... [pkg-builder.dan.net.uk] `-- Extracting py311-point-annotator-2.0.0_2: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-pyclipper-1.3.0p5_1... [pkg-builder.dan.net.uk] `-- Extracting py311-pyclipper-1.3.0p5_1: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-requests-cache0-0.9.8... [pkg-builder.dan.net.uk] | `-- Installing py311-attrs-25.3.0... [pkg-builder.dan.net.uk] | `-- Extracting py311-attrs-25.3.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-cattrs-24.1.3... [pkg-builder.dan.net.uk] | `-- Extracting py311-cattrs-24.1.3: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-url-normalize-1.4.3_1... [pkg-builder.dan.net.uk] | `-- Extracting py311-url-normalize-1.4.3_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-requests-cache0-0.9.8: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-resdk-22.0.0... [pkg-builder.dan.net.uk] | `-- Installing py311-aiohttp-3.11.16... [pkg-builder.dan.net.uk] | | `-- Installing py311-aiohappyeyeballs-2.6.1... [pkg-builder.dan.net.uk] | | `-- Extracting py311-aiohappyeyeballs-2.6.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-aiosignal-1.3.2... [pkg-builder.dan.net.uk] | | `-- Installing py311-frozenlist-1.6.0... [pkg-builder.dan.net.uk] | | `-- Extracting py311-frozenlist-1.6.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py311-aiosignal-1.3.2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-multidict-6.4.3... [pkg-builder.dan.net.uk] | | `-- Extracting py311-multidict-6.4.3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-propcache-0.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting py311-propcache-0.3.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-yarl-1.20.0... [pkg-builder.dan.net.uk] | | `-- Extracting py311-yarl-1.20.0: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py311-aiohttp-3.11.16: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-boto3-1.37.36... [pkg-builder.dan.net.uk] | | `-- Installing py311-botocore-1.37.36... [pkg-builder.dan.net.uk] | | `-- Installing py311-jmespath-1.0.1_1... [pkg-builder.dan.net.uk] | | `-- Extracting py311-jmespath-1.0.1_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py311-botocore-1.37.36: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-s3transfer-0.11.5... [pkg-builder.dan.net.uk] | | `-- Extracting py311-s3transfer-0.11.5: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py311-boto3-1.37.36: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-botocore-stubs-1.27.22_1... [pkg-builder.dan.net.uk] | `-- Extracting py311-botocore-stubs-1.27.22_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-mypy-boto3-s3-1.34.120_1... [pkg-builder.dan.net.uk] | `-- Extracting py311-mypy-boto3-s3-1.34.120_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-tqdm-4.67.1... [pkg-builder.dan.net.uk] | `-- Extracting py311-tqdm-4.67.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-tzlocal-5.2... [pkg-builder.dan.net.uk] | | `-- Installing py311-pytz-deprecation-shim-0.1.0.post0_3... [pkg-builder.dan.net.uk] | | `-- Extracting py311-pytz-deprecation-shim-0.1.0.post0_3: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py311-tzlocal-5.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-wrapt-1.17.2... [pkg-builder.dan.net.uk] | `-- Extracting py311-wrapt-1.17.2: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-resdk-22.0.0: .......... done [pkg-builder.dan.net.uk] Extracting py311-orange3-bioinformatics-4.8.4_1: .......... done ===== Message from py311-orange3-bioinformatics-4.8.4_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expiring misc/orange3. It is scheduled to be removed on or after 2025-06-21. ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-orange3-bioinformatics>0 - found ===> Returning to build of py311-orange3-single-cell-0.8.2_6 ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-astropy>0 - not found ===> Installing existing package /packages/All/py311-astropy-7.0.1_1,2.pkg [pkg-builder.dan.net.uk] Installing py311-astropy-7.0.1_1,2... [pkg-builder.dan.net.uk] `-- Installing py311-astropy-iers-data-0.2025.2.3.0.32.42... [pkg-builder.dan.net.uk] `-- Extracting py311-astropy-iers-data-0.2025.2.3.0.32.42: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-pyerfa-2.0.0.3_2... [pkg-builder.dan.net.uk] `-- Extracting py311-pyerfa-2.0.0.3_2: .......... done [pkg-builder.dan.net.uk] Extracting py311-astropy-7.0.1_1,2: .......... done ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-astropy>0 - found ===> Returning to build of py311-orange3-single-cell-0.8.2_6 ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-fastdtw>0 - not found ===> Installing existing package /packages/All/py311-fastdtw-0.3.4_3.pkg [pkg-builder.dan.net.uk] Installing py311-fastdtw-0.3.4_3... [pkg-builder.dan.net.uk] Extracting py311-fastdtw-0.3.4_3: .......... done ===== Message from py311-fastdtw-0.3.4_3: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Depends on expired devel/py-pytest-runner. It is scheduled to be removed on or after 2025-03-31. ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-fastdtw>0 - found ===> Returning to build of py311-orange3-single-cell-0.8.2_6 ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-joblib>=0.11 - found ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-loompy>=2.0.10 - not found ===> Installing existing package /packages/All/py311-loompy-3.0.7_2.pkg [pkg-builder.dan.net.uk] Installing py311-loompy-3.0.7_2... [pkg-builder.dan.net.uk] `-- Installing py311-click-8.1.7_1... [pkg-builder.dan.net.uk] `-- Extracting py311-click-8.1.7_1: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-numba-0.61.2... [pkg-builder.dan.net.uk] | `-- Installing onetbb-2022.1.0... [pkg-builder.dan.net.uk] | | `-- Installing hwloc2-2.11.2... [pkg-builder.dan.net.uk] | | `-- Installing level-zero-1.21.9... [pkg-builder.dan.net.uk] | | | `-- Installing libfmt-10.2.1... [pkg-builder.dan.net.uk] | | | `-- Extracting libfmt-10.2.1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing spdlog-1.15.2... [pkg-builder.dan.net.uk] | | | `-- Extracting spdlog-1.15.2: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting level-zero-1.21.9: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting hwloc2-2.11.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting onetbb-2022.1.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-llvmlite-0.44.0_1... [pkg-builder.dan.net.uk] | | `-- Installing llvm15-15.0.7_10... [pkg-builder.dan.net.uk] | | `-- Installing lua53-5.3.6_1... [pkg-builder.dan.net.uk] | | `-- Extracting lua53-5.3.6_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing perl5-5.36.3_3... [pkg-builder.dan.net.uk] | | `-- Extracting perl5-5.36.3_3: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting llvm15-15.0.7_10: .......... done create symlink for clang15 create symlink for clang15 (world) create symlink for clang++15 create symlink for clang++15 (world) [pkg-builder.dan.net.uk] | `-- Extracting py311-llvmlite-0.44.0_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-numba-0.61.2: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-numpy-groupies-0.11.2... [pkg-builder.dan.net.uk] `-- Extracting py311-numpy-groupies-0.11.2: .......... done [pkg-builder.dan.net.uk] Extracting py311-loompy-3.0.7_2: .......... done ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-loompy>=2.0.10 - found ===> Returning to build of py311-orange3-single-cell-0.8.2_6 ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-networkx>0 - found ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-pandas>=0.23 - found ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-scikit-learn>0 - found ===> py311-orange3-single-cell-0.8.2_6 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> py311-orange3-single-cell-0.8.2_6 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-orange3-single-cell-0.8.2_6 ===> Generating temporary packing list Warning: 'keywords' should be a list, got type 'tuple' /usr/local/lib/python3.11/site-packages/setuptools/dist.py:286: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated, consider using implicit namespaces instead (PEP 420). warnings.warn(msg, SetuptoolsDeprecationWarning) running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing Orange3_SingleCell.egg-info/PKG-INFO writing dependency_links to Orange3_SingleCell.egg-info/dependency_links.txt writing entry points to Orange3_SingleCell.egg-info/entry_points.txt writing namespace_packages to Orange3_SingleCell.egg-info/namespace_packages.txt writing requirements to Orange3_SingleCell.egg-info/requires.txt writing top-level names to Orange3_SingleCell.egg-info/top_level.txt reading manifest file 'Orange3_SingleCell.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.tab.gz' under directory 'orangecontrib/single_cell/tutorials' warning: no files found matching '*.tab' under directory 'orangecontrib/single_cell/tutorials' adding license file 'LICENSE' writing manifest file 'Orange3_SingleCell.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'orangecontrib.single_cell.launcher.icons' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'orangecontrib.single_cell.launcher.icons' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'orangecontrib.single_cell.launcher.icons' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'orangecontrib.single_cell.launcher.icons' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'orangecontrib.single_cell.tests.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'orangecontrib.single_cell.tests.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'orangecontrib.single_cell.tests.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'orangecontrib.single_cell.tests.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'orangecontrib.single_cell.widgets.icons' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'orangecontrib.single_cell.widgets.icons' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'orangecontrib.single_cell.widgets.icons' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'orangecontrib.single_cell.widgets.icons' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running install_lib Skipping installation of /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/__init__.py (namespace package) copying orangecontrib/single_cell/reader.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell copying orangecontrib/single_cell/__main__.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell copying orangecontrib/single_cell/__init__.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell copying orangecontrib/single_cell/widgets/__init__.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscoregenes.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/contingency_table.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owaligndatasets.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscorecells.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owloaddata.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owmarkergenes.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owdotmatrix.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owmultisample.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owfilter.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscdatasets.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owbatchnorm.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owtsne.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/owscpreprocess.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/load_data.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets copying orangecontrib/single_cell/widgets/icons/DotMatrix.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/ScoreCells.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Binarize.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/LoadData.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/BatchEffectRemoval.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/LogarithmicScale.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/SingleCellDatasets.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Normalize.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/AlignDatasets.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/SelectGenes.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/ScoreGenes.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/VCFFile.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/MultiSample.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/SingleCellPreprocess.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/TSNE.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Standardize.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Filter.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/MarkerGenes.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/category.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/widgets/icons/Rank.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/icons copying orangecontrib/single_cell/tests/test_owscoregenes.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owaligndatasets.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/__init__.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owtsne.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owscpreprocess.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owbatchnorm.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/owscorecells.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_load_data.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owdatasets.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owmarkergenes.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owloaddata.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owfilter.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owmultisample.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/test_owgenerank.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests copying orangecontrib/single_cell/tests/preprocess/__init__.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_scpreprocess.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_alignment.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_cca.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/preprocess/test_scbnorm.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/preprocess copying orangecontrib/single_cell/tests/data/data.txt.gz -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/lib.cell.meta -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.loom -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.xlsx -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/DATA_MATRIX_LOG_TPM.txt -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/lib.cell.count -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/data.pkl -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data copying orangecontrib/single_cell/tests/data/10x/mm10/barcodes.tsv -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/tests/data/10x/mm10/genes.tsv -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/tests/data/10x/mm10/matrix.mtx -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data/10x/mm10 copying orangecontrib/single_cell/tests/data/10x/hg19/barcodes.tsv -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data/10x/hg19 copying orangecontrib/single_cell/tests/data/10x/hg19/genes.tsv -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data/10x/hg19 copying orangecontrib/single_cell/tests/data/10x/hg19/matrix.mtx -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/data/10x/hg19 copying orangecontrib/single_cell/preprocess/__init__.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/biweight.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/scpreprocess.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/cca.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/clusteranalysis.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/alignment.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/preprocess/scbnorm.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess copying orangecontrib/single_cell/tutorials/030-Showcase-Clustering.ows -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/__init__.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/040-Showcase-RegrBatchEffects.ows -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM.ows -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/060-Showcase-StagePrediction.ows -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/020-Showcase-Markers.ows -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/050-Showcase-DatasetAlignment.ows -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/053-Showcase-DataSetPreprocessingAlignment.ows -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A/barcodes.tsv -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A/genes.tsv -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A/matrix.mtx -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-A copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C/barcodes.tsv -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C/genes.tsv -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C/matrix.mtx -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-C copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B/barcodes.tsv -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B/genes.tsv -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B copying orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B/matrix.mtx -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials/010-Showcase-LoadDataM-Data/batch-B copying orangecontrib/single_cell/launcher/welcome.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/__init__.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/iconview.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/update_check.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/config.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/splash.py -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher copying orangecontrib/single_cell/launcher/icons/PopulationPrediction.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/Biomarkers.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/Templates.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/PopulationPredictionColor.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/CellTypeDiscovery.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/splash.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/BiomarkersColor.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/CellTypeDiscoveryColor.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/getting-started-video-tutorials.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/Welcome.svg -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/icons copying orangecontrib/single_cell/launcher/icons/welcome-background.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/icons byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/reader.py to reader.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/__main__.py to __main__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/owscoregenes.py to owscoregenes.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/contingency_table.py to contingency_table.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/owaligndatasets.py to owaligndatasets.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/owscorecells.py to owscorecells.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/owloaddata.py to owloaddata.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/owmarkergenes.py to owmarkergenes.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/owdotmatrix.py to owdotmatrix.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/owmultisample.py to owmultisample.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/owfilter.py to owfilter.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/owscdatasets.py to owscdatasets.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/owbatchnorm.py to owbatchnorm.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/owtsne.py to owtsne.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/owscpreprocess.py to owscpreprocess.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/widgets/load_data.py to load_data.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/test_owscoregenes.py to test_owscoregenes.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/test_owaligndatasets.py to test_owaligndatasets.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/test_owtsne.py to test_owtsne.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/test_owscpreprocess.py to test_owscpreprocess.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/test_owbatchnorm.py to test_owbatchnorm.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/owscorecells.py to owscorecells.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/test_load_data.py to test_load_data.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/test_owdatasets.py to test_owdatasets.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/test_owmarkergenes.py to test_owmarkergenes.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/test_owloaddata.py to test_owloaddata.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/test_owfilter.py to test_owfilter.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/test_owmultisample.py to test_owmultisample.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/test_owgenerank.py to test_owgenerank.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/preprocess/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/preprocess/test_scpreprocess.py to test_scpreprocess.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/preprocess/test_alignment.py to test_alignment.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/preprocess/test_cca.py to test_cca.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tests/preprocess/test_scbnorm.py to test_scbnorm.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess/biweight.py to biweight.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess/scpreprocess.py to scpreprocess.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess/cca.py to cca.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess/clusteranalysis.py to clusteranalysis.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess/alignment.py to alignment.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/preprocess/scbnorm.py to scbnorm.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/tutorials/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/welcome.py to welcome.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/iconview.py to iconview.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/update_check.py to update_check.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/config.py to config.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/orangecontrib/single_cell/launcher/splash.py to splash.cpython-311.pyc writing byte-compilation script '/tmp/tmpeoctvmr_.py' /usr/local/bin/python3.11 /tmp/tmpeoctvmr_.py removing /tmp/tmpeoctvmr_.py running install_data creating /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help creating /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/index.html -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/Orange3ExampleAdd-ondoc.stp -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/genindex.html -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/.buildinfo -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/Orange3ExampleAdd-ondoc.hhp -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/Orange3ExampleAdd-ondoc.hhk -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell copying doc/build/htmlhelp/Orange3ExampleAdd-ondoc.hhc -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell creating /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/scoregenes.html -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/normalize.html -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/tsne.html -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/singlecelldatasets.html -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/scorecells.html -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/filter.html -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/widgets copying doc/build/htmlhelp/widgets/louvain.html -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/widgets creating /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/LouvainClustering-stamped.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/Filter-Example.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/LouvainClustering-Example.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/tSNE-stamped.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/ScoreGenes-stamped.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/ScoreCells-stamped.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/Normalize-stamped.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/tSNE-Example.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/SingleCellDatasets-stamped.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_images copying doc/build/htmlhelp/_images/Filter-stamped.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_images creating /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/file.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/_sphinx_javascript_frameworks_compat.js -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/jquery-3.6.0.js -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/nature.css -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/searchtools.js -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/underscore.js -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/language_data.js -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/minus.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/doctools.js -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/basic.css -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/style.css -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/underscore-1.13.1.js -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/documentation_options.js -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/plus.png -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/pygments.css -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/sphinx_highlight.js -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static copying doc/build/htmlhelp/_static/jquery.js -> /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/help/orange3-single_cell/_static running install_egg_info Copying Orange3_SingleCell.egg-info to /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/Orange3_SingleCell-0.8.2-py3.11.egg-info Installing /wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/stage/usr/local/lib/python3.11/site-packages/Orange3_SingleCell-0.8.2-py3.11-nspkg.pth running install_scripts writing list of installed files to '/wrkdirs/usr/ports/biology/py-orange3-single-cell/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-03T22:42:34+0000' 'PKG_NOTE_ports_top_git_hash=5529c5919b' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=cee4ec23e8' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-orange3-single-cell-0.8.2_6 ===> Building py311-orange3-single-cell-0.8.2_6 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-orange3-single-cell-0.8.2_6 build of biology/py-orange3-single-cell@py311 | py311-orange3-single-cell-0.8.2_6 ended at Sat May 3 23:45:58 BST 2025 build time: 00:03:25