=>> Building science/py-openbabel build started at Thu May 1 09:04:08 BST 2025 port directory: /usr/ports/science/py-openbabel package name: py311-openbabel-3.1.1.1_1 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 790 Mar 13 05:56 /usr/ports/science/py-openbabel/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: 06a08e69f3 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 05 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/05/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-openbabel/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-openbabel/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-openbabel/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-openbabel/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-openbabel/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-openbabel/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-openbabel/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-openbabel/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-openbabel/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-openbabel/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-openbabel/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-openbabel/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/openbabel" EXAMPLESDIR="share/examples/openbabel" DATADIR="share/openbabel" WWWDIR="www/openbabel" ETCDIR="etc/openbabel" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openbabel DOCSDIR=/usr/local/share/doc/openbabel EXAMPLESDIR=/usr/local/share/examples/openbabel WWWDIR=/usr/local/www/openbabel ETCDIR=/usr/local/etc/openbabel --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-openbabel-3.1.1.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> py311-openbabel-3.1.1.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-openbabel-3.1.1.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-openbabel-3.1.1.1_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-openbabel-3.1.1.1_1 for building => SHA256 Checksum OK for openbabel-3.1.1.1.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-openbabel-3.1.1.1_1 for building ===> Extracting for py311-openbabel-3.1.1.1_1 => SHA256 Checksum OK for openbabel-3.1.1.1.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-openbabel-3.1.1.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-openbabel-3.1.1.1_1 depends on executable: swig - not found ===> Installing existing package /packages/All/swig-4.2.1.pkg [pkg-builder.dan.net.uk] Installing swig-4.2.1... [pkg-builder.dan.net.uk] `-- Installing pcre2-10.45_1... [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.13_2... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.13_2: .......... done [pkg-builder.dan.net.uk] `-- Extracting pcre2-10.45_1: .......... done [pkg-builder.dan.net.uk] Extracting swig-4.2.1: .......... done ===> py311-openbabel-3.1.1.1_1 depends on executable: swig - found ===> Returning to build of py311-openbabel-3.1.1.1_1 ===> py311-openbabel-3.1.1.1_1 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg-builder.dan.net.uk] Installing py311-setuptools-63.1.0_3... [pkg-builder.dan.net.uk] `-- Installing python311-3.11.12... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.8... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.8: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-4.0.0... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-4.0.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] | `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting python311-3.11.12: .......... done [pkg-builder.dan.net.uk] Extracting py311-setuptools-63.1.0_3: .......... done ===== Message from python311-3.11.12: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-openbabel-3.1.1.1_1 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-openbabel-3.1.1.1_1 ===> py311-openbabel-3.1.1.1_1 depends on file: /usr/local/bin/python3.11 - found ===> py311-openbabel-3.1.1.1_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-openbabel-3.1.1.1_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-openbabel-3.1.1.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-openbabel-3.1.1.1_1 depends on shared library: libopenbabel.so - not found ===> Installing existing package /packages/All/openbabel-3.1.1.178_3.pkg [pkg-builder.dan.net.uk] Installing openbabel-3.1.1.178_3... 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[pkg-builder.dan.net.uk] | | | `-- Extracting duktape-lib-2.7.0: ...... done ===> Creating groups Creating group 'polkitd' with gid '565' ===> Creating users Creating user 'polkitd' with uid '565' [pkg-builder.dan.net.uk] | | `-- Extracting polkit-125_1: ......... done [pkg-builder.dan.net.uk] | | `-- Installing sqlite3-3.46.1_1,1... [pkg-builder.dan.net.uk] | | | `-- Installing libedit-3.1.20250104,1... [pkg-builder.dan.net.uk] | | | `-- Extracting libedit-3.1.20250104,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting sqlite3-3.46.1_1,1: ......... done ===> Creating groups Creating group 'colord' with gid '970' ===> Creating users Creating user 'colord' with uid '970' [pkg-builder.dan.net.uk] | | `-- Extracting colord-1.4.7_3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing cups-2.4.11_1... [pkg-builder.dan.net.uk] | | `-- Installing avahi-app-0.8_6... [pkg-builder.dan.net.uk] | | | `-- Installing dbus-glib-0.114... 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[pkg-builder.dan.net.uk] | | | `-- Extracting libnghttp2-1.65.0: ....... done ===> Creating groups Using existing group 'unbound' ===> Creating users Using existing user 'unbound' [pkg-builder.dan.net.uk] | | | `-- Extracting unbound-1.23.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting gnutls-3.8.9: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libpaper-1.1.28_1... [pkg-builder.dan.net.uk] | | `-- Extracting libpaper-1.1.28_1: .......... done ===> Creating groups Creating group 'cups' with gid '193' ===> Creating users Creating user 'cups' with uid '193' [pkg-builder.dan.net.uk] | | `-- Extracting cups-2.4.11_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing fribidi-1.0.16... [pkg-builder.dan.net.uk] | | `-- Extracting fribidi-1.0.16: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gsettings-desktop-schemas-47.1_1... [pkg-builder.dan.net.uk] | | `-- Extracting gsettings-desktop-schemas-47.1_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing harfbuzz-10.3.0... [pkg-builder.dan.net.uk] | | `-- Installing graphite2-1.3.14... [pkg-builder.dan.net.uk] | | `-- Extracting graphite2-1.3.14: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting harfbuzz-10.3.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing hicolor-icon-theme-0.18... [pkg-builder.dan.net.uk] | | `-- Extracting hicolor-icon-theme-0.18: . done [pkg-builder.dan.net.uk] | | `-- Installing libXcomposite-0.4.6_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting libXcomposite-0.4.6_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXcursor-1.2.2... [pkg-builder.dan.net.uk] | | `-- Extracting libXcursor-1.2.2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXdamage-1.1.6... 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[pkg-builder.dan.net.uk] | | `-- Extracting xkeyboard-config-2.41_4: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libxkbcommon-1.8.1_2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting gtk3-3.24.48: .......... done [pkg-builder.dan.net.uk] | `-- Installing libGLU-9.0.3... [pkg-builder.dan.net.uk] | `-- Extracting libGLU-9.0.3: ..... done [pkg-builder.dan.net.uk] | `-- Installing libXxf86vm-1.1.5... [pkg-builder.dan.net.uk] | `-- Extracting libXxf86vm-1.1.5: .......... done [pkg-builder.dan.net.uk] | `-- Installing libmspack-0.11alpha... [pkg-builder.dan.net.uk] | `-- Extracting libmspack-0.11alpha: ...... done [pkg-builder.dan.net.uk] | `-- Installing libsoup-2.74.3... [pkg-builder.dan.net.uk] | | `-- Installing glib-networking-2.80.1_1... [pkg-builder.dan.net.uk] | | `-- Installing libproxy-0.5.9_1... [pkg-builder.dan.net.uk] | | | `-- Installing curl-8.13.0_1... [pkg-builder.dan.net.uk] | | | `-- Installing brotli-1.1.0,1... [pkg-builder.dan.net.uk] | | | `-- Extracting brotli-1.1.0,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libssh2-1.11.1,3... [pkg-builder.dan.net.uk] | | | `-- Extracting libssh2-1.11.1,3: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting curl-8.13.0_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libproxy-0.5.9_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting glib-networking-2.80.1_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libgcrypt-1.11.0... [pkg-builder.dan.net.uk] | | `-- Installing libgpg-error-1.55... [pkg-builder.dan.net.uk] | | `-- Extracting libgpg-error-1.55: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libgcrypt-1.11.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libpsl-0.21.5_2... [pkg-builder.dan.net.uk] | | `-- Extracting libpsl-0.21.5_2: ........ done [pkg-builder.dan.net.uk] | `-- Extracting libsoup-2.74.3: .......... done [pkg-builder.dan.net.uk] | `-- Installing webkit2-gtk_40-2.46.6... [pkg-builder.dan.net.uk] | | `-- Installing enchant2-2.2.15_6... [pkg-builder.dan.net.uk] | | `-- Installing hunspell-1.7.2_1... [pkg-builder.dan.net.uk] | | | `-- Installing perl5-5.36.3_3... [pkg-builder.dan.net.uk] | | | `-- Extracting perl5-5.36.3_3: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting hunspell-1.7.2_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting enchant2-2.2.15_6: .......... done [pkg-builder.dan.net.uk] | | `-- Installing geoclue-2.7.2... [pkg-builder.dan.net.uk] | | `-- Installing libsoup3-3.6.5_2... [pkg-builder.dan.net.uk] | | `-- Extracting libsoup3-3.6.5_2: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting geoclue-2.7.2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing graphene-1.10.8_1... [pkg-builder.dan.net.uk] | | `-- Installing py311-pygobject-3.50.0... [pkg-builder.dan.net.uk] | | | `-- Installing py311-cairo-1.28.0,1... [pkg-builder.dan.net.uk] | | | `-- Extracting py311-cairo-1.28.0,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing pygobject-common-3.50.0... [pkg-builder.dan.net.uk] | | | `-- Extracting pygobject-common-3.50.0: .. done [pkg-builder.dan.net.uk] | | `-- Extracting py311-pygobject-3.50.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting graphene-1.10.8_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gstreamer1-plugins-bad-1.26.0... [pkg-builder.dan.net.uk] | | `-- Extracting gstreamer1-plugins-bad-1.26.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gstreamer1-plugins-gl-1.26.0... [pkg-builder.dan.net.uk] | | `-- Extracting gstreamer1-plugins-gl-1.26.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing harfbuzz-icu-10.3.0... [pkg-builder.dan.net.uk] | | `-- Extracting harfbuzz-icu-10.3.0: ..... done [pkg-builder.dan.net.uk] | | `-- Installing hyphen-2.8.8... [pkg-builder.dan.net.uk] | | `-- Extracting hyphen-2.8.8: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libavif-1.2.1... [pkg-builder.dan.net.uk] | | `-- Installing libyuv-0.0.1789_2... [pkg-builder.dan.net.uk] | | `-- Extracting libyuv-0.0.1789_2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing svt-av1-3.0.2... [pkg-builder.dan.net.uk] | | `-- Extracting svt-av1-3.0.2: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libavif-1.2.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libjxl-0.11.1_1... [pkg-builder.dan.net.uk] | | `-- Installing giflib-5.2.2... [pkg-builder.dan.net.uk] | | `-- Extracting giflib-5.2.2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing highway-1.2.0... [pkg-builder.dan.net.uk] | | `-- Extracting highway-1.2.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing openexr-3.3.3... [pkg-builder.dan.net.uk] | | | `-- Installing Imath-3.1.12... [pkg-builder.dan.net.uk] | | | `-- Extracting Imath-3.1.12: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting openexr-3.3.3: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libjxl-0.11.1_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libsecret-0.20.5_3... [pkg-builder.dan.net.uk] | | `-- Extracting libsecret-0.20.5_3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libsysinfo-0.0.3_3... [pkg-builder.dan.net.uk] | | `-- Extracting libsysinfo-0.0.3_3: ...... done [pkg-builder.dan.net.uk] | | `-- Installing libxslt-1.1.42... [pkg-builder.dan.net.uk] | | `-- Extracting libxslt-1.1.42: .......... done [pkg-builder.dan.net.uk] | | `-- Installing mesa-libs-24.1.7_1... [pkg-builder.dan.net.uk] | | `-- Installing libxshmfence-1.3.2... [pkg-builder.dan.net.uk] | | `-- Extracting libxshmfence-1.3.2: ...... done [pkg-builder.dan.net.uk] | | `-- Extracting mesa-libs-24.1.7_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing webp-1.5.0... [pkg-builder.dan.net.uk] | | `-- Installing freeglut-3.2.1... [pkg-builder.dan.net.uk] | | `-- Extracting freeglut-3.2.1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting webp-1.5.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing woff2-1.0.2_5... [pkg-builder.dan.net.uk] | | `-- Extracting woff2-1.0.2_5: .......... done [pkg-builder.dan.net.uk] | `-- Extracting webkit2-gtk_40-2.46.6: .......... done [pkg-builder.dan.net.uk] `-- Extracting wx30-gtk3-3.0.5.1_6: .......... done [pkg-builder.dan.net.uk] Extracting openbabel-3.1.1.178_3: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gdk-pixbuf-query-loaders.ucl Generating gdk-pixbuf modules cache ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: gtk-update-icon-cache.ucl Generating GTK icon cache for /usr/local/share/icons/hicolor Generating GTK icon cache for /usr/local/share/icons/Adwaita ==> Running trigger: glib-schemas.ucl Compiling glib schemas Warning: Schema ?org.gnome.system.locale? has path ?/system/locale/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy? has path ?/system/proxy/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.http? has path ?/system/proxy/http/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.https? has path ?/system/proxy/https/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.ftp? has path ?/system/proxy/ftp/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.socks? has path ?/system/proxy/socks/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. ==> Running trigger: shared-mime-info.ucl Building the Shared MIME-Info database cache ===== Message from boost-libs-1.87.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===== Message from freetype2-2.13.3: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from libinotify-20240724_1: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from duktape-lib-2.7.0: -- ===> NOTICE: The duktape-lib port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from wayland-1.23.1: -- Wayland requires XDG_RUNTIME_DIR to be defined to a path that will contain "wayland-%d" unix(4) sockets. This is usually handled by consolekit2 (via ck-launch-session) or pam_xdg (via login). ===== Message from libxkbcommon-1.8.1_2: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg ===== Message from libsoup-2.74.3: -- libsoup can use NTLM authentication if it is compiled with the SMB option. To use it, you must install a port that provides NTLM, like net/samba412 or net/samba413. ===== Message from libjxl-0.11.1_1: -- Additional packages recommended for new users: - imlib2-jxl (e.g., feh, scrot) - kf5-kimageformats (e.g., nomacs, flameshot, skanlite) - gimp-jxl-plugin ===== Message from freeglut-3.2.1: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. ===> py311-openbabel-3.1.1.1_1 depends on shared library: libopenbabel.so - found (/usr/local/lib/libopenbabel.so) ===> Returning to build of py311-openbabel-3.1.1.1_1 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-openbabel-3.1.1.1_1 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-openbabel-3.1.1.1_1 running build running build_ext Warning: invalid version number '3.1.1.1'. Guessing Open Babel location: - include_dirs: ['/usr/local/include/python3.11', '/usr/local/include/openbabel3'] - library_dirs: ['/usr/local/lib', '/usr/local/lib'] building 'openbabel._openbabel' extension swigging openbabel/openbabel-python.i to openbabel/openbabel-python_wrap.cpp swig -python -c++ -small -O -templatereduce -naturalvar -I/usr/local/include/python3.11 -I/usr/local/include/openbabel3 -o openbabel/openbabel-python_wrap.cpp openbabel/openbabel-python.i /usr/local/include/openbabel3/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /usr/local/include/openbabel3/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) /usr/local/include/openbabel3/openbabel/spectrophore.h:571: Warning 312: Nested struct not currently supported (ignored). /usr/local/include/openbabel3/openbabel/spectrophore.h:578: Warning 312: Nested struct not currently supported (ignored). creating build creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311 creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/openbabel cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -I/usr/local/include/openbabel3 -c openbabel/openbabel-python_wrap.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/openbabel/openbabel-python_wrap.o In file included from openbabel/openbabel-python_wrap.cpp:3592: /usr/local/include/openbabel3/openbabel/bond.h:58:15: warning: 'Visit' is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 58 | class OBAPI OBBond: public OBBase | ^ openbabel/openbabel-python_wrap.cpp:6442:31: note: in implicit copy assignment operator for 'OpenBabel::OBBond' first required here 6442 | *(swig::getpos(self,i)) = x; | ^ /usr/local/include/openbabel3/openbabel/bond.h:97:7: note: 'Visit' has been explicitly marked deprecated here 97 | OB_DEPRECATED_MSG("Use OBBitVec objects instead to be fully thread-safe.") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ In file included from openbabel/openbabel-python_wrap.cpp:3592: /usr/local/include/openbabel3/openbabel/bond.h:58:15: warning: 'Visit' is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 58 | class OBAPI OBBond: public OBBase | ^ /usr/local/include/openbabel3/openbabel/bond.h:97:7: note: 'Visit' has been explicitly marked deprecated here 97 | OB_DEPRECATED_MSG("Use OBBitVec objects instead to be fully thread-safe.") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:15115:43: warning: 'LookupBO' is deprecated: Easier to use the two-argument form [-Wdeprecated-declarations] 15115 | arg2 = ptr; } result = (int)(arg1)->LookupBO((std::string const &)*arg2); | ^ /usr/local/include/openbabel3/openbabel/data.h:256:7: note: 'LookupBO' has been explicitly marked deprecated here 256 | OB_DEPRECATED_MSG("Easier to use the two-argument form") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:15806:54: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 15806 | result = (bool)((OpenBabel::vector3 const *)arg1)->operator ==((OpenBabel::vector3 const &)*arg2); | ^ /usr/local/include/openbabel3/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:15822:54: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 15822 | result = (bool)((OpenBabel::vector3 const *)arg1)->operator !=((OpenBabel::vector3 const &)*arg2); | ^ /usr/local/include/openbabel3/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:16379:91: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] 16379 | arg3 = static_cast< int >(val3); result = (double)((OpenBabel::matrix3x3 const *)arg1)->Get(arg2,arg3); | ^ /usr/local/include/openbabel3/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here 171 | OB_DEPRECATED_MSG("use the constant operator() instead") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:16394:47: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] 16394 | arg4 = static_cast< double >(val4); (arg1)->Set(arg2,arg3,arg4); resultobj = SWIG_Py_Void(); return resultobj; fail: | ^ /usr/local/include/openbabel3/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:22038:88: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] 22038 | arg2 = reinterpret_cast< double * >(argp2); ((OpenBabel::OBGridData const *)arg1)->GetOriginVector(arg2); | ^ /usr/local/include/openbabel3/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:22138:11: warning: 'SetLimits' is deprecated: Use vector version instead [-Wdeprecated-declarations] 22138 | (arg1)->SetLimits((double const (*))arg2,(double const (*))arg3,(double const (*))arg4,(double const (*))arg5); | ^ /usr/local/include/openbabel3/openbabel/griddata.h:111:5: note: 'SetLimits' has been explicitly marked deprecated here 111 | OB_DEPRECATED_MSG("Use vector version instead") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:27444:61: warning: 'SetHybAndGeom' is deprecated [-Wdeprecated-declarations] 27444 | arg2 = static_cast< int >(val2); result = (bool)(arg1)->SetHybAndGeom(arg2); | ^ /usr/local/include/openbabel3/openbabel/atom.h:339:7: note: 'SetHybAndGeom' has been explicitly marked deprecated here 339 | OB_DEPRECATED bool SetHybAndGeom(int); | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ openbabel/openbabel-python_wrap.cpp:27850:55: warning: 'Visit' is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 27850 | arg2 = static_cast< bool >(val2); if (arg1) (arg1)->Visit = arg2; resultobj = SWIG_Py_Void(); return resultobj; fail: | ^ /usr/local/include/openbabel3/openbabel/bond.h:97:7: note: 'Visit' has been explicitly marked deprecated here 97 | OB_DEPRECATED_MSG("Use OBBitVec objects instead to be fully thread-safe.") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:27857:84: warning: 'Visit' is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 27857 | arg1 = reinterpret_cast< OpenBabel::OBBond * >(argp1); result = (bool) ((arg1)->Visit); | ^ /usr/local/include/openbabel3/openbabel/bond.h:97:7: note: 'Visit' has been explicitly marked deprecated here 97 | OB_DEPRECATED_MSG("Use OBBitVec objects instead to be fully thread-safe.") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:29392:67: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] 29392 | result = (OpenBabel::OBAtom *)((OpenBabel::OBMol const *)arg1)->GetFirstAtom(); | ^ /usr/local/include/openbabel3/openbabel/mol.h:279:5: note: 'GetFirstAtom' has been explicitly marked deprecated here 279 | OB_DEPRECATED | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ openbabel/openbabel-python_wrap.cpp:31848:103: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] 31848 | arg1 = reinterpret_cast< OpenBabel::OBRing * >(argp1); result = ((OpenBabel::OBRing const *)arg1)->PathSize(); | ^ /usr/local/include/openbabel3/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here 65 | OB_DEPRECATED_MSG("Use Size() instead") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:35639:81: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] 35639 | arg2 = reinterpret_cast< OpenBabel::OBMol * >(argp2); result = (bool)(arg1)->UpdateCoordinates(*arg2); | ^ /usr/local/include/openbabel3/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:35665:81: warning: 'UpdateConformers' is deprecated: Use GetConformers instead. [-Wdeprecated-declarations] 35665 | arg2 = reinterpret_cast< OpenBabel::OBMol * >(argp2); result = (bool)(arg1)->UpdateConformers(*arg2); | ^ /usr/local/include/openbabel3/openbabel/forcefield.h:721:5: note: 'UpdateConformers' has been explicitly marked deprecated here 721 | OB_DEPRECATED_MSG("Use GetConformers instead.") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:36238:73: warning: 'DistanceGeometry' is deprecated: Use OBDistanceGeometry class instead [-Wdeprecated-declarations] 36238 | arg1 = reinterpret_cast< OpenBabel::OBForceField * >(argp1); (arg1)->DistanceGeometry(); resultobj = SWIG_Py_Void(); | ^ /usr/local/include/openbabel3/openbabel/forcefield.h:1049:5: note: 'DistanceGeometry' has been explicitly marked deprecated here 1049 | OB_DEPRECATED_MSG("Use OBDistanceGeometry class instead") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:36554:77: warning: 'LineSearch' is deprecated: Current code should use LineSearch(double *, double*) instead. [-Wdeprecated-declarations] 36554 | arg3 = reinterpret_cast< OpenBabel::vector3 * >(argp3); result = (arg1)->LineSearch(arg2,*arg3); | ^ /usr/local/include/openbabel3/openbabel/forcefield.h:1222:5: note: 'LineSearch' has been explicitly marked deprecated here 1222 | OB_DEPRECATED_MSG("Current code should use LineSearch(double *, double*) instead.") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:37162:45: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] 37162 | result = (double)OpenBabel::OBForceField::VectorLengthDerivative(*arg1,*arg2); | ^ /usr/local/include/openbabel3/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here 1523 | OB_DEPRECATED | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ openbabel/openbabel-python_wrap.cpp:37208:45: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] 37208 | result = (double)OpenBabel::OBForceField::VectorAngleDerivative(*arg1,*arg2,*arg3); | ^ /usr/local/include/openbabel3/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here 1539 | OB_DEPRECATED | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ openbabel/openbabel-python_wrap.cpp:37279:45: warning: 'VectorOOPDerivative' is deprecated [-Wdeprecated-declarations] 37279 | result = (double)OpenBabel::OBForceField::VectorOOPDerivative(*arg1,*arg2,*arg3,*arg4); | ^ /usr/local/include/openbabel3/openbabel/forcefield.h:1556:5: note: 'VectorOOPDerivative' has been explicitly marked deprecated here 1556 | OB_DEPRECATED | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ openbabel/openbabel-python_wrap.cpp:37350:45: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] 37350 | result = (double)OpenBabel::OBForceField::VectorTorsionDerivative(*arg1,*arg2,*arg3,*arg4); | ^ /usr/local/include/openbabel3/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here 1572 | OB_DEPRECATED | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ openbabel/openbabel-python_wrap.cpp:41052:47: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] 41052 | arg2 = static_cast< double >(val2); (arg1)->SetDelta(arg2); resultobj = SWIG_Py_Void(); return resultobj; fail: return NULL; } | ^ /usr/local/include/openbabel3/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here 428 | OB_DEPRECATED_MSG("Has no effect.") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:41058:85: warning: 'GetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] 41058 | arg1 = reinterpret_cast< OpenBabel::OBRotor * >(argp1); result = (double)(arg1)->GetDelta(); | ^ /usr/local/include/openbabel3/openbabel/rotor.h:431:5: note: 'GetDelta' has been explicitly marked deprecated here 431 | OB_DEPRECATED_MSG("Has no effect.") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:41065:102: warning: 'GetFixedAtoms' is deprecated [-Wdeprecated-declarations] 41065 | arg1 = reinterpret_cast< OpenBabel::OBRotor * >(argp1); result = (OpenBabel::OBBitVec *) &(arg1)->GetFixedAtoms(); | ^ /usr/local/include/openbabel3/openbabel/rotor.h:434:5: note: 'GetFixedAtoms' has been explicitly marked deprecated here 434 | OB_DEPRECATED | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ openbabel/openbabel-python_wrap.cpp:41079:69: warning: 'SetFixedAtoms' is deprecated: See SetFixedBonds [-Wdeprecated-declarations] 41079 | arg2 = reinterpret_cast< OpenBabel::OBBitVec * >(argp2); (arg1)->SetFixedAtoms(*arg2); resultobj = SWIG_Py_Void(); | ^ /usr/local/include/openbabel3/openbabel/rotor.h:437:5: note: 'SetFixedAtoms' has been explicitly marked deprecated here 437 | OB_DEPRECATED_MSG("See SetFixedBonds") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:41086:102: warning: 'GetEvalAtoms' is deprecated [-Wdeprecated-declarations] 41086 | arg1 = reinterpret_cast< OpenBabel::OBRotor * >(argp1); result = (OpenBabel::OBBitVec *) &(arg1)->GetEvalAtoms(); | ^ /usr/local/include/openbabel3/openbabel/rotor.h:440:5: note: 'GetEvalAtoms' has been explicitly marked deprecated here 440 | OB_DEPRECATED | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ openbabel/openbabel-python_wrap.cpp:41100:69: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] 41100 | arg2 = reinterpret_cast< OpenBabel::OBBitVec * >(argp2); (arg1)->SetEvalAtoms(*arg2); resultobj = SWIG_Py_Void(); | ^ /usr/local/include/openbabel3/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here 443 | OB_DEPRECATED | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ openbabel/openbabel-python_wrap.cpp:41107:85: warning: 'GetRotAtoms' is deprecated [-Wdeprecated-declarations] 41107 | arg1 = reinterpret_cast< OpenBabel::OBRotor * >(argp1); result = (void *)(arg1)->GetRotAtoms(); | ^ /usr/local/include/openbabel3/openbabel/rotor.h:446:5: note: 'GetRotAtoms' has been explicitly marked deprecated here 446 | OB_DEPRECATED | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ openbabel/openbabel-python_wrap.cpp:41115:72: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 41115 | result = (std::vector< double,std::allocator< double > > *) &(arg1)->GetResolution(); | ^ /usr/local/include/openbabel3/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:41126:46: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] 41126 | arg2 = static_cast< int >(val2); (arg1)->SetNumCoords(arg2); resultobj = SWIG_Py_Void(); return resultobj; fail: | ^ /usr/local/include/openbabel3/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here 452 | OB_DEPRECATED | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ openbabel/openbabel-python_wrap.cpp:41409:81: warning: 'IdentifyEvalAtoms' is deprecated: Not declared. Use Setup() for top-level functionality [-Wdeprecated-declarations] 41409 | arg2 = reinterpret_cast< OpenBabel::OBMol * >(argp2); result = (bool)(arg1)->IdentifyEvalAtoms(*arg2); | ^ /usr/local/include/openbabel3/openbabel/rotor.h:627:5: note: 'IdentifyEvalAtoms' has been explicitly marked deprecated here 627 | OB_DEPRECATED_MSG("Not declared. Use Setup() for top-level functionality") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:41422:69: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 41422 | arg2 = reinterpret_cast< OpenBabel::OBBitVec * >(argp2); (arg1)->SetFixAtoms(*arg2); resultobj = SWIG_Py_Void(); | ^ /usr/local/include/openbabel3/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:41429:87: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] 41429 | arg1 = reinterpret_cast< OpenBabel::OBRotorList * >(argp1); result = (bool)(arg1)->HasFixedAtoms(); | ^ /usr/local/include/openbabel3/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ openbabel/openbabel-python_wrap.cpp:41436:72: warning: 'IgnoreSymmetryRemoval' is deprecated: Currently has no effect [-Wdeprecated-declarations] 41436 | arg1 = reinterpret_cast< OpenBabel::OBRotorList * >(argp1); (arg1)->IgnoreSymmetryRemoval(); resultobj = SWIG_Py_Void(); | ^ /usr/local/include/openbabel3/openbabel/rotor.h:650:5: note: 'IgnoreSymmetryRemoval' has been explicitly marked deprecated here 650 | OB_DEPRECATED_MSG("Currently has no effect") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ In file included from openbabel/openbabel-python_wrap.cpp:3592: /usr/local/include/openbabel3/openbabel/bond.h:58:15: warning: 'Visit' is deprecated: Use OBBitVec objects instead to be fully thread-safe. [-Wdeprecated-declarations] 58 | class OBAPI OBBond: public OBBase | ^ openbabel/openbabel-python_wrap.cpp:4263:46: note: in implicit copy constructor for 'OpenBabel::OBBond' first required here 4263 | return traits_from_ptr::from(new Type(val), 1); | ^ openbabel/openbabel-python_wrap.cpp:4282:31: note: in instantiation of member function 'swig::traits_from::from' requested here 4282 | return traits_from::from(val); | ^ openbabel/openbabel-python_wrap.cpp:4539:20: note: in instantiation of function template specialization 'swig::from' requested here 4539 | return swig::from(v); | ^ openbabel/openbabel-python_wrap.cpp:4626:9: note: in instantiation of member function 'swig::from_oper::operator()' requested here 4626 | return from(static_cast(*(base::current))); | ^ openbabel/openbabel-python_wrap.cpp:4665:5: note: in instantiation of member function 'swig::SwigPyForwardIteratorClosed_T, OpenBabel::OBBond>::value' requested here 4665 | SwigPyIteratorClosed_T(out_iterator curr, out_iterator first, out_iterator last, PyObject *seq) | ^ openbabel/openbabel-python_wrap.cpp:4695:16: note: in instantiation of member function 'swig::SwigPyIteratorClosed_T>::SwigPyIteratorClosed_T' requested here 4695 | return new SwigPyIteratorClosed_T(current, begin, end, seq); | ^ openbabel/openbabel-python_wrap.cpp:6368:20: note: in instantiation of function template specialization 'swig::make_output_iterator>' requested here 6368 | return swig::make_output_iterator(self->begin(), self->begin(), self->end(), *PYTHON_SELF); | ^ /usr/local/include/openbabel3/openbabel/bond.h:97:7: note: 'Visit' has been explicitly marked deprecated here 97 | OB_DEPRECATED_MSG("Use OBBitVec objects instead to be fully thread-safe.") | ^ /usr/local/include/openbabel3/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 36 warnings generated. creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311 creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/openbabel c++ -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/openbabel/openbabel-python_wrap.o -L/usr/local/lib -L/usr/local/lib -lopenbabel -o build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/openbabel/_openbabel.cpython-311.so running build_py copying openbabel/openbabel.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/openbabel copying openbabel/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/openbabel copying openbabel/pybel.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/openbabel =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-openbabel-3.1.1.1_1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-openbabel-3.1.1.1_1 ===> Generating temporary packing list running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build_ext Warning: invalid version number '3.1.1.1'. Guessing Open Babel location: - include_dirs: ['/usr/local/include/python3.11', '/usr/local/include/openbabel3'] - library_dirs: ['/usr/local/lib', '/usr/local/lib'] running build running build_py running install_lib creating /wrkdirs/usr/ports/science/py-openbabel/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/science/py-openbabel/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/science/py-openbabel/work-py311/stage/usr/local/lib/python3.11/site-packages/openbabel copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/openbabel/openbabel.py -> /wrkdirs/usr/ports/science/py-openbabel/work-py311/stage/usr/local/lib/python3.11/site-packages/openbabel copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/openbabel/__init__.py -> /wrkdirs/usr/ports/science/py-openbabel/work-py311/stage/usr/local/lib/python3.11/site-packages/openbabel copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/openbabel/pybel.py -> /wrkdirs/usr/ports/science/py-openbabel/work-py311/stage/usr/local/lib/python3.11/site-packages/openbabel copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/openbabel/_openbabel.cpython-311.so -> /wrkdirs/usr/ports/science/py-openbabel/work-py311/stage/usr/local/lib/python3.11/site-packages/openbabel byte-compiling /wrkdirs/usr/ports/science/py-openbabel/work-py311/stage/usr/local/lib/python3.11/site-packages/openbabel/openbabel.py to openbabel.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-openbabel/work-py311/stage/usr/local/lib/python3.11/site-packages/openbabel/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-openbabel/work-py311/stage/usr/local/lib/python3.11/site-packages/openbabel/pybel.py to pybel.cpython-311.pyc writing byte-compilation script '/tmp/tmp18u6gc7z.py' /usr/local/bin/python3.11 /tmp/tmp18u6gc7z.py removing /tmp/tmp18u6gc7z.py running install_egg_info running egg_info creating openbabel.egg-info writing openbabel.egg-info/PKG-INFO writing dependency_links to openbabel.egg-info/dependency_links.txt writing top-level names to openbabel.egg-info/top_level.txt writing manifest file 'openbabel.egg-info/SOURCES.txt' reading manifest file 'openbabel.egg-info/SOURCES.txt' writing manifest file 'openbabel.egg-info/SOURCES.txt' Copying openbabel.egg-info to /wrkdirs/usr/ports/science/py-openbabel/work-py311/stage/usr/local/lib/python3.11/site-packages/openbabel-3.1.1.1-py3.11.egg-info running install_scripts writing list of installed files to '/wrkdirs/usr/ports/science/py-openbabel/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-01T08:04:08+0000' 'PKG_NOTE_ports_top_git_hash=5529c5919b' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=06a08e69f3' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-openbabel-3.1.1.1_1 ===> Building py311-openbabel-3.1.1.1_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-openbabel-3.1.1.1_1 build of science/py-openbabel@py311 | py311-openbabel-3.1.1.1_1 ended at Thu May 1 09:05:53 BST 2025 build time: 00:01:46