=>> Building science/py-mmcif build started at Tue May 6 08:57:50 BST 2025 port directory: /usr/ports/science/py-mmcif package name: py311-mmcif-0.90.0_1 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 947 Mar 13 05:56 /usr/ports/science/py-mmcif/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: 06a08e69f3 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 02 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-mmcif/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-mmcif/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-mmcif/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-mmcif/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py311-mmcif" EXAMPLESDIR="share/examples/py311-mmcif" DATADIR="share/py311-mmcif" WWWDIR="www/py311-mmcif" ETCDIR="etc/py311-mmcif" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py311-mmcif DOCSDIR=/usr/local/share/doc/py311-mmcif EXAMPLESDIR=/usr/local/share/examples/py311-mmcif WWWDIR=/usr/local/www/py311-mmcif ETCDIR=/usr/local/etc/py311-mmcif --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-mmcif-0.90.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> py311-mmcif-0.90.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-mmcif-0.90.0_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-mmcif-0.90.0_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-mmcif-0.90.0_1 for building => SHA256 Checksum OK for mmcif-0.90.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-mmcif-0.90.0_1 for building ===> Extracting for py311-mmcif-0.90.0_1 => SHA256 Checksum OK for mmcif-0.90.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-mmcif-0.90.0_1 ===> Applying FreeBSD patches for py311-mmcif-0.90.0_1 from /usr/ports/science/py-mmcif/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-mmcif-0.90.0_1 depends on package: py311-future>0 - not found ===> Installing existing package /packages/All/py311-future-0.18.3_1.pkg [pkg-builder.dan.net.uk] Installing py311-future-0.18.3_1... [pkg-builder.dan.net.uk] `-- Installing python311-3.11.12... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.8... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.8: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-4.0.0... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-4.0.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] | `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.13_2... 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[pkg-builder.dan.net.uk] | | `-- Extracting py311-typing-extensions-4.13.2: ....... done [pkg-builder.dan.net.uk] | `-- Extracting py311-openssl-25.0.0_1,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-urllib3-1.26.20,1: .......... done [pkg-builder.dan.net.uk] Extracting py311-requests-2.32.3: .......... done ===== Message from py311-urllib3-1.26.20,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. ===> py311-mmcif-0.90.0_1 depends on package: py311-requests>=2.25 - found ===> Returning to build of py311-mmcif-0.90.0_1 ===> py311-mmcif-0.90.0_1 depends on package: py311-six>0 - not found ===> Installing existing package /packages/All/py311-six-1.17.0.pkg [pkg-builder.dan.net.uk] Installing py311-six-1.17.0... 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[pkg-builder.dan.net.uk] Extracting py311-setuptools-63.1.0_3: .......... done ===> py311-mmcif-0.90.0_1 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-mmcif-0.90.0_1 ===> py311-mmcif-0.90.0_1 depends on file: /usr/local/bin/python3.11 - found ===> py311-mmcif-0.90.0_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-mmcif-0.90.0_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-mmcif-0.90.0_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-mmcif-0.90.0_1 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-mmcif-0.90.0_1 running build running build_py creating build creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311 creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif copying mmcif/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api copying mmcif/api/Method.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api copying mmcif/api/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api copying mmcif/api/DataCategoryTyped.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api copying mmcif/api/DictionaryApi.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api copying mmcif/api/PdbxContainers.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api copying mmcif/api/DictionaryInclude.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api copying mmcif/api/DataCategoryBase.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api copying mmcif/api/DataCategory.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api copying mmcif/api/MethodUtils.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api copying mmcif/api/DictMethodRunner.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api copying mmcif/api/DataCategoryFormatted.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/core copying mmcif/core/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/core creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io copying mmcif/io/PdbxWriter.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io copying mmcif/io/IoAdapterPy.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io copying mmcif/io/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io copying mmcif/io/PdbxReader.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io copying mmcif/io/BuildDictionaryExec.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io copying mmcif/io/IoAdapterBase.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io copying mmcif/io/CifFile.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io copying mmcif/io/IoAdapterCore.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io copying mmcif/io/BinaryCifReader.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io copying mmcif/io/BinaryCifWriter.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io copying mmcif/io/PdbxExceptions.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io running build_ext CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is Clang 18.1.6 -- The CXX compiler identification is Clang 18.1.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at CMakeLists.txt:21 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.11 (found version "3.11.12") CMake Warning (dev) at CMakeLists.txt:22 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/local/lib/libpython3.11.so (found version "3.11.12") -- Python include path set to /usr/local/include/python3.11 CMake Deprecation Warning at modules/pybind11/CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- pybind11 v2.10.1 CMake Warning (dev) at modules/pybind11/tools/FindPythonLibsNew.cmake:98 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/pybind11/tools/pybind11Tools.cmake:50 (find_package) modules/pybind11/tools/pybind11Common.cmake:180 (include) modules/pybind11/CMakeLists.txt:206 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.11 (found suitable version "3.11.12", minimum required is "3.6") -- Found PythonLibs: /usr/local/lib/libpython3.11.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Performing Test HAS_FLTO_THIN -- Performing Test HAS_FLTO_THIN - Success -- Compiler flags -Wall -Wno-unused-variable -Wno-deprecated-declarations -Wno-register -DBIG_ENDIAN_PLATFORM -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -fno-common -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -flto -- ---CMAKE MODULE PATH - -- ---CMAKE SOURCE DIR - /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0 -- ---CMAKE PROJECT DIR - /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0 -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Found BISON: /usr/local/bin/bison (found version "3.8.2") STATUS,---ALL DONE WITH CMAKE -- Configuring done (1.1s) -- Generating done (0.0s) -- Build files have been written to: /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/build/temp.freebsd-14.2-RELEASE-amd64-cpython-311 [ 1%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/RcsbPlatform.C.o [ 3%] Building CXX object CMakeFiles/tables.dir/modules/cpp-tables/src/ISTable.C.o [ 4%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/RcsbFile.C.o [ 6%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/BlockIO.C.o [ 8%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/CifString.C.o [ 9%] Building CXX object CMakeFiles/tables.dir/modules/cpp-tables/src/ITTable.C.o [ 11%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/Serializer.C.o [ 13%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/GenString.C.o [ 14%] Building CXX object CMakeFiles/tables.dir/modules/cpp-tables/src/TTable.C.o [ 16%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/GenCont.C.o [ 18%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/Exceptions.C.o [ 19%] Building CXX object CMakeFiles/tables.dir/modules/cpp-tables/src/TableFile.C.o [ 21%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/DataInfo.C.o [ 22%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/mapped_vector.C.o [ 22%] Built target tables [ 24%] Building C object CMakeFiles/regex.dir/modules/cc-regex/src/regcomp.c.o [ 26%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/mapped_ptr_vector.C.o /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:86:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 86 | rcsb_regcomp(preg, pattern, cflags) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:190:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 190 | p_ere(p, stop) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:236:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 236 | p_ere_exp(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:385:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 385 | p_str(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:406:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 406 | p_bre(p, end1, end2) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:439:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 439 | p_simp_re(p, starordinary) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:557:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 557 | p_count(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:580:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 580 | p_bracket(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:654:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 654 | p_b_term(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:720:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 720 | p_b_cclass(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:756:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 756 | p_b_eclass(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:771:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 771 | p_b_symbol(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:791:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 791 | p_b_coll_elem(p, endc) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:820:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 820 | othercase(ch) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:839:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 839 | bothcases(p, ch) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:864:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 864 | ordinary(p, ch) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:886:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 886 | nonnewline(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:910:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 910 | repeat(p, start, from, to) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:982:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 982 | seterr(p, e) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:998:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 998 | allocset(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1053:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1053 | freeset(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1078:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1078 | freezeset(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1112:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1112 | firstch(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1131:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1131 | nch(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1151:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1151 | mcadd(p, cs, cp) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1241:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1241 | mcinvert(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1256:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1256 | mccase(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1268:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1268 | isinsets(g, c) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1288:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1288 | samesets(g, c1, c2) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1310:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1310 | categorize(p, g) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1338:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1338 | dupl(p, start, finish) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1366:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1366 | doemit(p, op, opnd) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1392:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1392 | doinsert(p, op, opnd, pos) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1432:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1432 | dofwd(p, pos, value) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1450:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1450 | enlarge(p, size) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1473:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1473 | stripsnug(p, g) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1496:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1496 | findmust(p, g) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1577:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1577 | pluscount(p, g) | ^ 38 warnings generated. [ 27%] Building C object CMakeFiles/regex.dir/modules/cc-regex/src/regexec.c.o In file included from /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regexec.c:46: /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:66:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 66 | matcher(g, string, nmatch, pmatch, eflags) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:9:17: note: expanded from macro 'matcher' 9 | #define matcher smatcher | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:232:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 232 | dissect(m, start, stop, startst, stopst) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:12:17: note: expanded from macro 'dissect' 12 | #define dissect sdissect | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:251:17: warning: variable 'dp' set but not used [-Wunused-but-set-variable] 251 | register char *dp; | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:420:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 420 | backref(m, start, stop, startst, stopst, lev) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:13:17: note: expanded from macro 'backref' 13 | #define backref sbackref | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:625:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 625 | fast(m, start, stop, startst, stopst) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:10:14: note: expanded from macro 'fast' 10 | #define fast sfast | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:716:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 716 | slow(m, start, stop, startst, stopst) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:11:14: note: expanded from macro 'slow' 11 | #define slow sslow | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:812:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 812 | step(g, start, stop, bef, ch, aft) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:14:14: note: expanded from macro 'step' 14 | #define step sstep | ^ In file included from /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regexec.c:95: /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:66:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 66 | matcher(g, string, nmatch, pmatch, eflags) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:20:17: note: expanded from macro 'matcher' 20 | #define matcher lmatcher | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:232:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 232 | dissect(m, start, stop, startst, stopst) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:23:17: note: expanded from macro 'dissect' 23 | #define dissect ldissect | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:251:17: warning: variable 'dp' set but not used [-Wunused-but-set-variable] 251 | register char *dp; | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:420:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 420 | backref(m, start, stop, startst, stopst, lev) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:24:17: note: expanded from macro 'backref' 24 | #define backref lbackref | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:625:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 625 | fast(m, start, stop, startst, stopst) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:21:14: note: expanded from macro 'fast' 21 | #define fast lfast | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:716:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 716 | slow(m, start, stop, startst, stopst) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:22:14: note: expanded from macro 'slow' 22 | #define slow lslow | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:812:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 812 | step(g, start, stop, bef, ch, aft) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/engine.c:25:14: note: expanded from macro 'step' 25 | #define step lstep | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regexec.c:113:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 113 | rcsb_regexec(preg, string, nmatch, pmatch, eflags) | ^ 15 warnings generated. [ 29%] Building C object CMakeFiles/regex.dir/modules/cc-regex/src/regerror.c.o /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regerror.c:64:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 64 | regerror(errcode, preg, errbuf, errbuf_size) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regerror.c:112:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 112 | regatoi(preg, localbuf) | ^ 2 warnings generated. [ 31%] Building C object CMakeFiles/regex.dir/modules/cc-regex/src/regfree.c.o /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cc-regex/src/regfree.c:14:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 14 | rcsb_regfree(preg) | ^ 1 warning generated. [ 31%] Built target regex [ 32%] Building CXX object CMakeFiles/cif-file.dir/modules/cpp-cif-file/src/CifFile.C.o [ 32%] Built target common [ 34%] Building CXX object CMakeFiles/cif-file-util.dir/modules/cpp-cif-file-util/src/CifFileUtil.C.o [ 36%] Building CXX object CMakeFiles/cif-file-util.dir/modules/cpp-cif-file-util/src/CifCorrector.C.o [ 37%] Building CXX object CMakeFiles/cif-file.dir/modules/cpp-cif-file/src/DicFile.C.o [ 37%] Built target cif-file-util [ 39%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictObjFileCreator.C.o [ 40%] Building CXX object CMakeFiles/cif-file.dir/modules/cpp-cif-file/src/ParentChild.C.o [ 42%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictObjFileReader.C.o [ 44%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictObjContInfo.C.o [ 45%] Building CXX object CMakeFiles/cif-file.dir/modules/cpp-cif-file/src/CifParentChild.C.o [ 47%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictObjCont.C.o [ 49%] Building CXX object CMakeFiles/cif-file.dir/modules/cpp-cif-file/src/CifDataInfo.C.o [ 50%] Building CXX object CMakeFiles/cif-file.dir/modules/cpp-cif-file/src/CifExcept.C.o [ 52%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictObjFile.C.o [ 52%] Built target cif-file [ 54%] [BISON][bisontarget1] Building parser with bison 3.8.2 [ 55%] [FLEX][flextarget1] Building scanner with flex 2.6.4 [ 57%] [BISON][bisontarget2] Building parser with bison 3.8.2 [ 59%] [FLEX][flextarget2] Building scanner with flex 2.6.4 [ 60%] Building CXX object CMakeFiles/cif-parser.dir/modules/cpp-cif-parser/src/CifFileReadDef.C.o [ 62%] Building CXX object CMakeFiles/cif-parser.dir/modules/cpp-cif-parser/src/CifScannerBase.C.o [ 63%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictDataInfo.C.o [ 65%] Building CXX object CMakeFiles/cif-parser.dir/modules/cpp-cif-parser/src/CifParserBase.C.o [ 67%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictParentChild.C.o /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cpp-cif-parser/src/CifParserBase.C:142:13: warning: variable 'b' set but not used [-Wunused-but-set-variable] 142 | int b = 0; | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cpp-cif-parser/src/CifParserBase.C:180:13: warning: variable 'b' set but not used [-Wunused-but-set-variable] 180 | int b = 0; | ^ 2 warnings generated. [ 68%] Building CXX object CMakeFiles/cif-parser.dir/modules/cpp-cif-parser/src/DICScannerBase.C.o [ 68%] Built target dict-obj-file [ 70%] Building CXX object CMakeFiles/cif-parser.dir/modules/cpp-cif-parser/src/DICParserBase.C.o [ 72%] Building C object CMakeFiles/cif-parser.dir/src/CifParser.c.o [ 73%] Building C object CMakeFiles/cif-parser.dir/src/DICParser.c.o [ 75%] Building C object CMakeFiles/cif-parser.dir/src/CifScanner.c.o [ 77%] Building C object CMakeFiles/cif-parser.dir/src/DICScanner.c.o /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/modules/cpp-cif-parser/src/DICParserBase.C:156:13: warning: variable 'b' set but not used [-Wunused-but-set-variable] 156 | int b = 0; | ^ 1 warning generated. [ 77%] Built target cif-parser [ 78%] Linking CXX static library lib/libmmciflib-all.a [ 78%] Built target mmciflib-all [ 80%] Building CXX object CMakeFiles/mmcif_reader_test_1.dir/modules/cpp-mmciflib-test/src/CifReader.C.o [ 81%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifDataInfo.cpp.o [ 83%] Linking CXX executable bin/mmcif_reader_test_1 [ 83%] Built target mmcif_reader_test_1 [ 85%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifFile.cpp.o [ 86%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifFileReadDef.cpp.o [ 88%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifFileUtil.cpp.o [ 90%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapDicFile.cpp.o [ 91%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapDictDataInfo.cpp.o [ 93%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapISTable.cpp.o [ 95%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapTableFile.cpp.o [ 96%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapmmciflib.cpp.o [ 98%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wraprcsb_types.cpp.o [100%] Linking CXX shared module /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/core/mmciflib.cpython-311.so [100%] Built target mmciflib ------------- setup.py ----------------- Extension source path /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0 CMAKE_ARGS ['-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/core', '-DPYTHON_EXECUTABLE=/usr/local/bin/python3.11', '-DPYTHON_LIBRARY=/usr/local/lib/libpython3.11.so', '-DPYTHON_INCLUDE_DIR=/usr/local/include/python3.11', '-DCMAKE_BUILD_TYPE=Release'] self.build_temp build/temp.freebsd-14.2-RELEASE-amd64-cpython-311 extdir /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/core ext.name mmcif.core.mmciflib sys.executable /usr/local/bin/python3.11 sys.exec_prefix /usr/local CXXFLAGS -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DVERSION_INFO=\"0.90.0\" =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-mmcif-0.90.0_1 depends on package: py311-future>0 - found ===> py311-mmcif-0.90.0_1 depends on package: py311-msgpack>0 - found ===> py311-mmcif-0.90.0_1 depends on package: py311-requests>=2.25 - found ===> py311-mmcif-0.90.0_1 depends on package: py311-six>0 - found ===> py311-mmcif-0.90.0_1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-mmcif-0.90.0_1 ===> Generating temporary packing list running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Warning (dev) at CMakeLists.txt:2 (project): Policy CMP0048 is not set: project() command manages VERSION variables. Run "cmake --help-policy CMP0048" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The following variable(s) would be set to empty: CMAKE_PROJECT_VERSION CMAKE_PROJECT_VERSION_MAJOR CMAKE_PROJECT_VERSION_MINOR CMAKE_PROJECT_VERSION_PATCH This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:21 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.11 (found version "3.11.12") CMake Warning (dev) at CMakeLists.txt:22 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Python include path set to /usr/local/include/python3.11 CMake Deprecation Warning at modules/pybind11/CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- pybind11 v2.10.1 -- Compiler flags -Wall -Wno-unused-variable -Wno-deprecated-declarations -Wno-register -DBIG_ENDIAN_PLATFORM -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -fno-common -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -flto -- ---CMAKE MODULE PATH - -- ---CMAKE SOURCE DIR - /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0 -- ---CMAKE PROJECT DIR - /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0 STATUS,---ALL DONE WITH CMAKE -- Configuring done (0.1s) -- Generating done (0.0s) -- Build files have been written to: /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/build/temp.freebsd-14.2-RELEASE-amd64-cpython-311 [ 6%] Built target tables [ 24%] Built target common [ 31%] Built target regex [ 40%] Built target cif-file [ 44%] Built target cif-file-util [ 65%] Built target cif-parser [ 77%] Built target dict-obj-file [ 78%] Built target mmciflib-all [ 81%] Built target mmcif_reader_test_1 [ 83%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifDataInfo.cpp.o [ 85%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifFile.cpp.o [ 86%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifFileReadDef.cpp.o [ 88%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifFileUtil.cpp.o [ 90%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapDicFile.cpp.o [ 91%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapDictDataInfo.cpp.o [ 93%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapISTable.cpp.o [ 95%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapTableFile.cpp.o [ 96%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapmmciflib.cpp.o [ 98%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wraprcsb_types.cpp.o [100%] Linking CXX shared module /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/core/mmciflib.cpython-311.so [100%] Built target mmciflib ------------- setup.py ----------------- Extension source path /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0 CMAKE_ARGS ['-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/core', '-DPYTHON_EXECUTABLE=/usr/local/bin/python3.11', '-DPYTHON_LIBRARY=/usr/local/lib/libpython3.11.so', '-DPYTHON_INCLUDE_DIR=/usr/local/include/python3.11', '-DCMAKE_BUILD_TYPE=Release'] self.build_temp build/temp.freebsd-14.2-RELEASE-amd64-cpython-311 extdir /wrkdirs/usr/ports/science/py-mmcif/work-py311/mmcif-0.90.0/build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/core ext.name mmcif.core.mmciflib sys.executable /usr/local/bin/python3.11 sys.exec_prefix /usr/local CXXFLAGS -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DVERSION_INFO=\"0.90.0\" running install_lib creating /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif creating /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api/Method.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api/__init__.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api/DataCategoryTyped.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api/DictionaryApi.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api/PdbxContainers.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api/DictionaryInclude.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api/DataCategoryBase.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api/DataCategory.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api/MethodUtils.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api/DictMethodRunner.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/api/DataCategoryFormatted.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/__init__.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif creating /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/core copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/core/__init__.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/core copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/core/mmciflib.cpython-311.so -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/core creating /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io/PdbxWriter.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io/IoAdapterPy.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io/__init__.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io/PdbxReader.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io/BuildDictionaryExec.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io/IoAdapterBase.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io/CifFile.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io/IoAdapterCore.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io/BinaryCifReader.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io/BinaryCifWriter.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/mmcif/io/PdbxExceptions.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api/Method.py to Method.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api/DataCategoryTyped.py to DataCategoryTyped.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api/DictionaryApi.py to DictionaryApi.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api/PdbxContainers.py to PdbxContainers.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api/DictionaryInclude.py to DictionaryInclude.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api/DataCategoryBase.py to DataCategoryBase.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api/DataCategory.py to DataCategory.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api/MethodUtils.py to MethodUtils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api/DictMethodRunner.py to DictMethodRunner.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/api/DataCategoryFormatted.py to DataCategoryFormatted.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/core/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io/PdbxWriter.py to PdbxWriter.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io/IoAdapterPy.py to IoAdapterPy.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io/PdbxReader.py to PdbxReader.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io/BuildDictionaryExec.py to BuildDictionaryExec.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io/IoAdapterBase.py to IoAdapterBase.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io/CifFile.py to CifFile.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io/IoAdapterCore.py to IoAdapterCore.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io/BinaryCifReader.py to BinaryCifReader.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io/BinaryCifWriter.py to BinaryCifWriter.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif/io/PdbxExceptions.py to PdbxExceptions.cpython-311.pyc writing byte-compilation script '/tmp/tmp9bf1qb2b.py' /usr/local/bin/python3.11 /tmp/tmp9bf1qb2b.py removing /tmp/tmp9bf1qb2b.py running install_egg_info running egg_info writing mmcif.egg-info/PKG-INFO writing dependency_links to mmcif.egg-info/dependency_links.txt writing entry points to mmcif.egg-info/entry_points.txt writing requirements to mmcif.egg-info/requires.txt writing top-level names to mmcif.egg-info/top_level.txt reading manifest file 'mmcif.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'mmcif.egg-info/SOURCES.txt' Copying mmcif.egg-info to /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/lib/python3.11/site-packages/mmcif-0.90.0-py3.11.egg-info running install_scripts Installing build_dict_cli script to /wrkdirs/usr/ports/science/py-mmcif/work-py311/stage/usr/local/bin writing list of installed files to '/wrkdirs/usr/ports/science/py-mmcif/work-py311/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/build_dict_cli --> bin/build_dict_cli-3.11 Link: @bin/build_dict_cli --> bin/build_dict_cli-3.11 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-06T07:57:50+0000' 'PKG_NOTE_ports_top_git_hash=5529c5919b' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=06a08e69f3' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-mmcif-0.90.0_1 ===> Building py311-mmcif-0.90.0_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-mmcif-0.90.0_1 build of science/py-mmcif@py311 | py311-mmcif-0.90.0_1 ended at Tue May 6 09:02:45 BST 2025 build time: 00:04:55