=>> Building science/py-asap3 build started at Tue May 6 15:16:12 BST 2025 port directory: /usr/ports/science/py-asap3 package name: py311-asap3-3.12.8_3 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 685 Mar 13 05:56 /usr/ports/science/py-asap3/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: 06a08e69f3 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 01 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-asap3/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-asap3/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-asap3/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-asap3/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-asap3/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-asap3/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-asap3/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-asap3/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-asap3/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-asap3/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-asap3/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-asap3/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py311-asap3" EXAMPLESDIR="share/examples/py311-asap3" DATADIR="share/py311-asap3" WWWDIR="www/py311-asap3" ETCDIR="etc/py311-asap3" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py311-asap3 DOCSDIR=/usr/local/share/doc/py311-asap3 EXAMPLESDIR=/usr/local/share/examples/py311-asap3 WWWDIR=/usr/local/www/py311-asap3 ETCDIR=/usr/local/etc/py311-asap3 --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-asap3-3.12.8_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> py311-asap3-3.12.8_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-asap3-3.12.8_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-asap3-3.12.8_3 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-asap3-3.12.8_3 for building => SHA256 Checksum OK for asap3-3.12.8.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-asap3-3.12.8_3 for building ===> Extracting for py311-asap3-3.12.8_3 => SHA256 Checksum OK for asap3-3.12.8.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-asap3-3.12.8_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-asap3-3.12.8_3 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_6,1.pkg [pkg-builder.dan.net.uk] Installing py311-numpy-1.26.4_6,1... [pkg-builder.dan.net.uk] `-- Installing gcc13-13.3.0_2... [pkg-builder.dan.net.uk] | `-- Installing binutils-2.44,1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.7... [pkg-builder.dan.net.uk] | | `-- Installing liblz4-1.10.0,1... [pkg-builder.dan.net.uk] | | `-- Extracting liblz4-1.10.0,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.7: .......... done [pkg-builder.dan.net.uk] | `-- Extracting binutils-2.44,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | `-- Installing mpfr-4.2.2,1... 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[pkg-builder.dan.net.uk] | `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.13_2... [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.13_2: .......... done [pkg-builder.dan.net.uk] `-- Extracting python311-3.11.12: .......... done [pkg-builder.dan.net.uk] `-- Installing suitesparse-umfpack-6.3.5_1... [pkg-builder.dan.net.uk] | `-- Installing suitesparse-amd-3.3.3... [pkg-builder.dan.net.uk] | | `-- Installing suitesparse-config-7.10.2... [pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-config-7.10.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-amd-3.3.3: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-camd-3.3.3... [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-camd-3.3.3: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-ccolamd-3.3.4... [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-ccolamd-3.3.4: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-cholmod-5.3.2... [pkg-builder.dan.net.uk] | | `-- Installing suitesparse-colamd-3.3.4... [pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-colamd-3.3.4: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-cholmod-5.3.2: .......... done [pkg-builder.dan.net.uk] `-- Extracting suitesparse-umfpack-6.3.5_1: .......... done [pkg-builder.dan.net.uk] Extracting py311-numpy-1.26.4_6,1: .......... done ===== Message from gcc13-13.3.0_2: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python311-3.11.12: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-asap3-3.12.8_3 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> Returning to build of py311-asap3-3.12.8_3 ===> py311-asap3-3.12.8_3 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg-builder.dan.net.uk] Installing py311-setuptools-63.1.0_3... [pkg-builder.dan.net.uk] Extracting py311-setuptools-63.1.0_3: .......... done ===> py311-asap3-3.12.8_3 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-asap3-3.12.8_3 ===> py311-asap3-3.12.8_3 depends on file: /usr/local/bin/python3.11 - found ===> py311-asap3-3.12.8_3 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-asap3-3.12.8_3 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-asap3-3.12.8_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-asap3-3.12.8_3 depends on shared library: libmpich.so - not found ===> Installing existing package /packages/All/mpich-4.3.0.pkg [pkg-builder.dan.net.uk] Installing mpich-4.3.0... [pkg-builder.dan.net.uk] `-- Installing hwloc2-2.11.2... [pkg-builder.dan.net.uk] | `-- Installing level-zero-1.21.9... [pkg-builder.dan.net.uk] | | `-- Installing libfmt-10.2.1... [pkg-builder.dan.net.uk] | | `-- Extracting libfmt-10.2.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing spdlog-1.15.2... [pkg-builder.dan.net.uk] | | `-- Extracting spdlog-1.15.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting level-zero-1.21.9: .......... done [pkg-builder.dan.net.uk] | `-- Installing libpciaccess-0.18.1_1... [pkg-builder.dan.net.uk] | | `-- Installing hwdata-0.394,1... [pkg-builder.dan.net.uk] | | `-- Extracting hwdata-0.394,1: ...... done [pkg-builder.dan.net.uk] | `-- Extracting libpciaccess-0.18.1_1: ..... done [pkg-builder.dan.net.uk] | `-- Installing libxml2-2.11.9... 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[pkg-builder.dan.net.uk] `-- Extracting perl5-5.36.3_3: .......... done [pkg-builder.dan.net.uk] Extracting mpich-4.3.0: .......... done ===> py311-asap3-3.12.8_3 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Returning to build of py311-asap3-3.12.8_3 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-asap3-3.12.8_3 /bin/sh: pkg-config: not found Asap version number: 3.12.8 customize-local.py not found - this is OK. customize-pkg-builder.dan.net.uk.py not found - this is OK. Reading customization from customize.py Setting CC=mpicxx -pthread Setting CXX=mpicxx -pthread Setting LDSHARED=mpicxx -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong Setting LDCXXSHARED=mpicxx -pthread -shared Recording version info into VersionInfo_autogen CC = c++ CFLAGS = -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include Identifying source files Identifying Python submodules running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-asap3-3.12.8_3 /bin/sh: pkg-config: not found Asap version number: 3.12.8 customize-local.py not found - this is OK. customize-pkg-builder.dan.net.uk.py not found - this is OK. Reading customization from customize.py Setting CC=mpicxx -pthread Setting CXX=mpicxx -pthread Setting LDSHARED=mpicxx -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong Setting LDCXXSHARED=mpicxx -pthread -shared Identifying source files Identifying Python submodules running build running build_py creating build creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311 creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 copying Python/asap3/memory.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 copying Python/asap3/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 copying Python/asap3/mpi.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 copying Python/asap3/version.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 copying Python/asap3/EMT2013Parameters.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 copying Python/asap3/timing.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 copying Python/asap3/constraints.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 copying Python/asap3/testtools.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 copying Python/asap3/EMT2011_py.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 copying Python/asap3/fixepydoc.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 copying Python/asap3/GuptaParameters.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 copying Python/asap3/EMT2011Parameters.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3 creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis copying Python/asap3/analysis/particle.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis copying Python/asap3/analysis/cutcluster.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis copying Python/asap3/analysis/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis copying Python/asap3/analysis/rdf.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis copying Python/asap3/analysis/clusterposition.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis copying Python/asap3/analysis/ptm.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis copying Python/asap3/analysis/findcluster.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis copying Python/asap3/analysis/localstructure.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis copying Python/asap3/analysis/averagepositions.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md copying Python/asap3/md/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md copying Python/asap3/md/md.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md copying Python/asap3/md/langevin.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md copying Python/asap3/md/nptberendsen.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md copying Python/asap3/md/verlet.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md copying Python/asap3/md/nvtberendsen.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md copying Python/asap3/md/npt.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md copying Python/asap3/md/velocitydistribution.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/io copying Python/asap3/io/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/io copying Python/asap3/io/bundletrajectory.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/io copying Python/asap3/io/cpu_setup.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/io copying Python/asap3/io/ReadOldFiles.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/io copying Python/asap3/io/trajectory.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/io creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc copying Python/asap3/nanoparticle_mc/cluster.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc copying Python/asap3/nanoparticle_mc/Logger.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc copying Python/asap3/nanoparticle_mc/AdsCalc.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc copying Python/asap3/nanoparticle_mc/mc_result.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc copying Python/asap3/nanoparticle_mc/atommontecarlodata.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc copying Python/asap3/nanoparticle_mc/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc copying Python/asap3/nanoparticle_mc/langmuirExpression.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc copying Python/asap3/nanoparticle_mc/resizecluster.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc copying Python/asap3/nanoparticle_mc/clusteratom.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/montecarlo copying Python/asap3/nanoparticle_mc/montecarlo/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/montecarlo copying Python/asap3/nanoparticle_mc/montecarlo/surface.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/montecarlo copying Python/asap3/nanoparticle_mc/montecarlo/atom.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/montecarlo creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/data copying Python/asap3/nanoparticle_mc/data/symmetry.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/data copying Python/asap3/nanoparticle_mc/data/au.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/data copying Python/asap3/nanoparticle_mc/data/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/data copying Python/asap3/nanoparticle_mc/data/fcc.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/data creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools copying Python/asap3/Tools/ElasticConstants.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools copying Python/asap3/Tools/EMT_two_atom_test.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools copying Python/asap3/Tools/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools copying Python/asap3/Tools/niflheim.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools copying Python/asap3/Tools/Timing.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools copying Python/asap3/Tools/SurfaceEnergies.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools copying Python/asap3/Tools/MaterialProperties.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools copying Python/asap3/Tools/AsapFileToTrajectory.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools copying Python/asap3/Tools/OptimizationDatabase.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools copying Python/asap3/Tools/AtomicEnergies.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization copying Python/asap3/Tools/ParameterOptimization/Quantities.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization copying Python/asap3/Tools/ParameterOptimization/RGL.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization copying Python/asap3/Tools/ParameterOptimization/Performance.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization copying Python/asap3/Tools/ParameterOptimization/Optimization.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization copying Python/asap3/Tools/ParameterOptimization/SearchParallel.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization copying Python/asap3/Tools/ParameterOptimization/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization copying Python/asap3/Tools/ParameterOptimization/ScipyFmin.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization copying Python/asap3/Tools/ParameterOptimization/EMT.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization copying Python/asap3/Tools/ParameterOptimization/Sampling.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization copying Python/asap3/Tools/ParameterOptimization/Search.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization copying Python/asap3/Tools/ParameterOptimization/GetParameters.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo copying Python/asap3/MonteCarlo/Base.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo copying Python/asap3/MonteCarlo/Basin.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo copying Python/asap3/MonteCarlo/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo copying Python/asap3/MonteCarlo/Metropolis.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo copying Python/asap3/MonteCarlo/Start.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves copying Python/asap3/MonteCarlo/Moves/Base.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves copying Python/asap3/MonteCarlo/Moves/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves copying Python/asap3/MonteCarlo/Moves/Surface.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves/Data copying Python/asap3/MonteCarlo/Moves/Data/symmetry.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves/Data copying Python/asap3/MonteCarlo/Moves/Data/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves/Data copying Python/asap3/MonteCarlo/Moves/Data/fcc.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves/Data creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup copying Python/asap3/setup/VelocityDistribution.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup copying Python/asap3/setup/multidislocation.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup copying Python/asap3/setup/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup copying Python/asap3/setup/displacementfield.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup copying Python/asap3/setup/dislocation.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline copying Python/asap3/setup/nanocrystalline/plane_utils.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline copying Python/asap3/setup/nanocrystalline/helpers.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline copying Python/asap3/setup/nanocrystalline/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline copying Python/asap3/setup/nanocrystalline/energy.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline copying Python/asap3/setup/nanocrystalline/nanocrystalline.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline copying Python/asap3/setup/nanocrystalline/quat_utils.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline copying Python/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline copying Python/asap3/setup/nanocrystalline/grain_structures.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline copying Python/asap3/setup/nanocrystalline/dislocated.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/visualize copying Python/asap3/visualize/primiplotter.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/visualize copying Python/asap3/visualize/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/visualize copying Python/asap3/visualize/fieldplotter.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/visualize copying Python/asap3/visualize/colortable.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/visualize creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/optimize copying Python/asap3/optimize/fire.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/optimize copying Python/asap3/optimize/optimize.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/optimize copying Python/asap3/optimize/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/optimize copying Python/asap3/optimize/mdmin.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/optimize creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/ParallelListOfAtoms.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/CheckArray.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/MonteCarloAtoms.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/ListOfElements.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/BuiltinPotentials.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/UtilityFunctions.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/EMTParameters.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/OpenKIMcalculator.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/checkversion.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/Subject.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/Builtins.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/Threads.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal copying Python/asap3/Internal/Collector.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal creating build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/Compatibility copying Python/asap3/Internal/Compatibility/__init__.py -> build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/Compatibility running build_ext building '_asap' extension creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311 creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/qcprot creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/voronoi creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Parallel creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/ParallelInterface creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools creating build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/VersionInfo_autogen cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/AsapObject.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/AsapObject.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/Debug.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/Debug.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/DynamicAtoms.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/DynamicAtoms.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/Exception.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/Exception.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/ImageAtoms.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/ImageAtoms.o Basics/ImageAtoms.cpp:52:3: warning: '~ImageAtoms' has a non-throwing exception specification but can still throw [-Wexceptions] 52 | ASSERT(refcount == 0); | ^ Basics/Exception.h:158:5: note: expanded from macro 'ASSERT' 158 | throw AssertionFailed(#EX, __FILE__, __LINE__, __PRETTY_FUNCTION__) | ^ Basics/ImageAtoms.cpp:48:13: note: destructor has a implicit non-throwing exception specification 48 | ImageAtoms::~ImageAtoms() | ^ Basics/ImageAtoms.cpp:82:22: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 82 | if (pos.capacity() < nTot) | ~~~~~~~~~~~~~~ ^ ~~~~ Basics/ImageAtoms.cpp:84:30: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 84 | ASSERT(allpositions.size() >= nTot); | ~~~~~~~~~~~~~~~~~~~ ^ ~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/ImageAtoms.cpp:86:21: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 86 | ASSERT(pos.size() == nTot); | ~~~~~~~~~~ ^ ~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/ImageAtoms.cpp:95:30: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 95 | ASSERT(allpositions.size() >= n); | ~~~~~~~~~~~~~~~~~~~ ^ ~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/ImageAtoms.cpp:97:22: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 97 | if (pos.capacity() < n) | ~~~~~~~~~~~~~~ ^ ~ Basics/ImageAtoms.cpp:170:33: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 170 | ASSERT(scaledPositions.size() == nAtoms + nGhosts); | ~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/ImageAtoms.cpp:221:31: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 221 | if (allpositions.capacity() < nSize) | ~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~ Basics/ImageAtoms.cpp:223:29: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 223 | if (allnumbers.capacity() < nSize) | ~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~ Basics/ImageAtoms.cpp:238:30: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 238 | ASSERT(allpositions.size() <= nSize); | ~~~~~~~~~~~~~~~~~~~ ^ ~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/ImageAtoms.cpp:241:41: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 241 | ASSERT(orig_atoms_translations.size() == nAtoms + nGhosts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 11 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/ImagePotential.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/ImagePotential.o Basics/ImagePotential.cpp:139:21: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 139 | for (int i = 0; i < orig_map.size(); i++) | ~ ^ ~~~~~~~~~~~~~~~ Basics/ImagePotential.cpp:139:21: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 139 | for (int i = 0; i < orig_map.size(); i++) | ~ ^ ~~~~~~~~~~~~~~~ Basics/ImagePotential.cpp:93:9: note: in instantiation of function template specialization 'AsapNS::ImagePotential::CollectFromImages' requested here 93 | CollectFromImages(forces); | ^ Basics/ImagePotential.cpp:139:21: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 139 | for (int i = 0; i < orig_map.size(); i++) | ~ ^ ~~~~~~~~~~~~~~~ Basics/ImagePotential.cpp:118:9: note: in instantiation of function template specialization 'AsapNS::ImagePotential::CollectFromImages' requested here 118 | CollectFromImages(virials); | ^ 3 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/Langevin.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/Langevin.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/Matrix3x3.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/Matrix3x3.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/MolecularDynamics.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/MolecularDynamics.o Basics/MolecularDynamics.cpp:237:12: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 237 | ASSERT(n == obs_kwargs.size()); | ~ ^ ~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 1 warning generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/MonteCarloAtoms.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/MonteCarloAtoms.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/NeighborCellLocator.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/NeighborCellLocator.o Basics/NeighborCellLocator.cpp:87:21: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 87 | for (int i = 0; i < nbCells_onthefly.size(); ++i) | ~ ^ ~~~~~~~~~~~~~~~~~~~~~~~ Basics/NeighborCellLocator.cpp:128:33: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 128 | ASSERT(scaledPositions.size() == nAllAtoms); | ~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/NeighborCellLocator.cpp:324:42: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 324 | if (cellLayoutChanged || (cells.size() != nTotalCells[3])) | ~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~ Basics/NeighborCellLocator.cpp:335:27: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 335 | ASSERT(cells.size() == nTotalCells[3]); | ~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/NeighborCellLocator.cpp:336:25: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 336 | for (int i = 0; i < cells.size(); i++) | ~ ^ ~~~~~~~~~~~~ Basics/NeighborCellLocator.cpp:372:21: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 372 | for (int i = 0; i < cells.size(); i++) | ~ ^ ~~~~~~~~~~~~ Basics/NeighborCellLocator.cpp:487:21: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 487 | for (int i = 0; i < nbCells_onthefly.size(); ++i) | ~ ^ ~~~~~~~~~~~~~~~~~~~~~~~ Basics/NeighborCellLocator.cpp:490:21: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 490 | for (int i = 0; i < cells.size(); i++) | ~ ^ ~~~~~~~~~~~~ Basics/NeighborCellLocator.cpp:1041:33: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1041 | ASSERT(scaledPositions.size() == nAllAtoms); | ~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/NeighborCellLocator.cpp:1048:39: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1048 | if (wrappedPositions.capacity() < spsz) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~ Basics/NeighborCellLocator.cpp:1051:38: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1051 | if (offsetPositions.capacity() < spsz) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~ Basics/NeighborCellLocator.cpp:1088:39: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1088 | if (wrappedPositions.capacity() < spsz) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~ Basics/NeighborCellLocator.cpp:1091:44: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1091 | if (scaledOffsetPositions.capacity() < spsz) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~ Basics/NeighborCellLocator.cpp:1263:37: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1263 | ASSERT(referencePositions.size() == nAtoms); | ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/NeighborCellLocator.cpp:1264:34: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1264 | ASSERT(offsetPositions.size() == nAllAtoms); | ~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/NeighborCellLocator.cpp:1281:38: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1281 | ASSERT(wrappedPositions.size() == nAllAtoms); | ~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/NeighborCellLocator.cpp:1412:33: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1412 | if (referencePositions.size() > n) | ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~ Basics/NeighborCellLocator.cpp:1414:31: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1414 | if (wrappedPositions.size() > n) | ~~~~~~~~~~~~~~~~~~~~~~~ ^ ~ Basics/NeighborCellLocator.cpp:1416:30: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1416 | if (scaledPositions.size() > n) | ~~~~~~~~~~~~~~~~~~~~~~ ^ ~ Basics/NeighborCellLocator.cpp:1418:30: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1418 | if (offsetPositions.size() > n) | ~~~~~~~~~~~~~~~~~~~~~~ ^ ~ Basics/NeighborCellLocator.cpp:1420:36: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1420 | if (scaledOffsetPositions.size() > n) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~ Basics/NeighborCellLocator.cpp:1452:21: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1452 | if (i->size() > longest) | ~~~~~~~~~ ^ ~~~~~~~ 22 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/NeighborList.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/NeighborList.o Basics/NeighborList.cpp:126:19: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 126 | if (nAllAtoms != nbList.size()) | ~~~~~~~~~ ^ ~~~~~~~~~~~~~ Basics/NeighborList.cpp:128:33: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 128 | if (fulllists && (nAllAtoms != complNbList.size())) | ~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~ Basics/NeighborList.cpp:200:29: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 200 | if (nbList[i].capacity() < reservedLength) | ~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~ Basics/NeighborList.cpp:210:38: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 210 | if (complNbList[i].capacity() < reservedLength) | ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~ Basics/NeighborList.cpp:359:12: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 359 | if (size < nbList[a1].size()) | ~~~~ ^ ~~~~~~~~~~~~~~~~~ Basics/NeighborList.cpp:479:12: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 479 | if (size < nbList[a1].size() + complNbList[a1].size()) | ~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Basics/NeighborList.cpp:835:21: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 835 | for (int i = 0; i < nbList[n].size(); i++) | ~ ^ ~~~~~~~~~~~~~~~~ Basics/NeighborList.cpp:841:25: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 841 | for (int i = 0; i < complNbList[n].size(); i++) | ~ ^ ~~~~~~~~~~~~~~~~~~~~~ Basics/NeighborList.cpp:911:23: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 911 | for (int i = 0; i < translationTable.size(); i++) | ~ ^ ~~~~~~~~~~~~~~~~~~~~~~~ 9 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/NeighborList2013.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/NeighborList2013.o Basics/NeighborList2013.cpp:33:12: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 33 | if (size < nbList[a1].size()) | ~~~~ ^ ~~~~~~~~~~~~~~~~~ 1 warning generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/NormalAtoms.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/NormalAtoms.o Basics/NormalAtoms.cpp:427:22: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 427 | if (numbers.size() != nAtoms+nGhosts) | ~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~ Basics/NormalAtoms.cpp:472:40: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 472 | bool pos_resized = (positions.size() != nAtoms+nGhosts); | ~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~ Basics/NormalAtoms.cpp:530:31: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 530 | ASSERT(positions.size() == nAtoms + nGhosts); | ~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/NormalAtoms.cpp:531:26: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 531 | if (pos.capacity() < nAtoms + nGhosts) | ~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~ Basics/NormalAtoms.cpp:537:26: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'const int' [-Wsign-compare] 537 | if (pos.capacity() < nAtoms) | ~~~~~~~~~~~~~~ ^ ~~~~~~ Basics/NormalAtoms.cpp:540:25: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'const int' [-Wsign-compare] 540 | ASSERT(pos.size() == nAtoms); | ~~~~~~~~~~ ^ ~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/NormalAtoms.cpp:552:27: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 552 | ASSERT(positions.size() >= n); | ~~~~~~~~~~~~~~~~ ^ ~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Basics/NormalAtoms.cpp:554:22: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 554 | if (pos.capacity() < n) | ~~~~~~~~~~~~~~ ^ ~ 8 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/RandomNumbers.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/RandomNumbers.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/Timing.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/Timing.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/Vec.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/Vec.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Basics/VelocityVerlet.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/VelocityVerlet.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Brenner/BrennerPotential.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/BrennerPotential.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Brenner/bcuint.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/bcuint.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Brenner/caguts.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/caguts.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Brenner/expand.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/expand.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Brenner/inter2d_iv.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/inter2d_iv.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Brenner/mtable.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/mtable.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Brenner/pibond.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/pibond.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Brenner/radic.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/radic.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Brenner/radicdata.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/radicdata.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Brenner/sili_germ.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/sili_germ.o Brenner/sili_germ.cpp:158:13: warning: code will never be executed [-Wunreachable-code] 158 | if(0) printf("si ge tote %2d %10.7f %10.7f %10.7f %10.7f\n", | ^~~~~~ Brenner/sili_germ.cpp:158:10: note: silence by adding parentheses to mark code as explicitly dead 158 | if(0) printf("si ge tote %2d %10.7f %10.7f %10.7f %10.7f\n", | ^ | /* DISABLES CODE */ ( ) 1 warning generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Brenner/spgch.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/spgch.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Interface/DynamicsInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/DynamicsInterface.o In file included from Interface/DynamicsInterface.cpp:30: Interface/PythonConversions.h:48:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/DynamicsInterface.cpp:30: Interface/PythonConversions.h:59:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/DynamicsInterface.cpp:30: Interface/PythonConversions.h:71:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/DynamicsInterface.cpp:30: Interface/PythonConversions.h:84:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/DynamicsInterface.cpp:30: Interface/PythonConversions.h:97:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Interface/DynamicsInterface.cpp:72:30: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 72 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; | ^ Interface/DynamicsInterface.cpp:72:39: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 72 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; | ^ Interface/DynamicsInterface.cpp:72:47: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 72 | static char *kwlist[] = {"atoms", "calc", "timestep", NULL}; | ^ Interface/DynamicsInterface.cpp:111:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; | ^ Interface/DynamicsInterface.cpp:111:37: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; | ^ Interface/DynamicsInterface.cpp:111:45: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; | ^ Interface/DynamicsInterface.cpp:111:57: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; | ^ Interface/DynamicsInterface.cpp:111:66: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; | ^ Interface/DynamicsInterface.cpp:111:75: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; | ^ Interface/DynamicsInterface.cpp:111:81: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; | ^ Interface/DynamicsInterface.cpp:111:87: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; | ^ Interface/DynamicsInterface.cpp:111:96: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 111 | static char *kwlist[] = {"atoms", "calc", "timestep", "sdpos", "sdmom", "c1", "c2", "fixcm", "seed", NULL}; | ^ Interface/DynamicsInterface.cpp:157:30: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 157 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; | ^ Interface/DynamicsInterface.cpp:157:39: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 157 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; | ^ Interface/DynamicsInterface.cpp:157:52: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 157 | static char *kwlist[] = {"steps", "observers", "dyn", NULL}; | ^ Interface/DynamicsInterface.cpp:185:30: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; | ^ Interface/DynamicsInterface.cpp:185:38: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; | ^ Interface/DynamicsInterface.cpp:185:44: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; | ^ Interface/DynamicsInterface.cpp:185:50: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; | ^ Interface/DynamicsInterface.cpp:185:59: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 185 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; | ^ Interface/DynamicsInterface.cpp:209:30: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; | ^ Interface/DynamicsInterface.cpp:209:38: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; | ^ Interface/DynamicsInterface.cpp:209:44: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; | ^ Interface/DynamicsInterface.cpp:209:50: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; | ^ Interface/DynamicsInterface.cpp:209:59: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 209 | static char *kwlist[] = {"act0", "c3", "c4", "pmcor", "cnst", NULL}; | ^ Interface/DynamicsInterface.cpp:246:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 246 | static char *kwlist[] = {"gaussian", NULL}; | ^ 31 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Interface/EMTParameterProviderInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/EMTParameterProviderInterface.o In file included from Interface/EMTParameterProviderInterface.cpp:32: Interface/PythonConversions.h:48:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/EMTParameterProviderInterface.cpp:32: Interface/PythonConversions.h:59:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/EMTParameterProviderInterface.cpp:32: Interface/PythonConversions.h:71:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/EMTParameterProviderInterface.cpp:32: Interface/PythonConversions.h:84:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/EMTParameterProviderInterface.cpp:32: Interface/PythonConversions.h:97:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 5 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Interface/ExceptionInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/ExceptionInterface.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Interface/NeighborLocatorInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/NeighborLocatorInterface.o In file included from Interface/NeighborLocatorInterface.cpp:30: Interface/PythonConversions.h:48:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/NeighborLocatorInterface.cpp:30: Interface/PythonConversions.h:59:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/NeighborLocatorInterface.cpp:30: Interface/PythonConversions.h:71:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/NeighborLocatorInterface.cpp:30: Interface/PythonConversions.h:84:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/NeighborLocatorInterface.cpp:30: Interface/PythonConversions.h:97:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Interface/NeighborLocatorInterface.cpp:160:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 160 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; | ^ Interface/NeighborLocatorInterface.cpp:160:36: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 160 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; | ^ Interface/NeighborLocatorInterface.cpp:160:45: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 160 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; | ^ Interface/NeighborLocatorInterface.cpp:160:60: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 160 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", "full", NULL}; | ^ Interface/NeighborLocatorInterface.cpp:211:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 211 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; | ^ Interface/NeighborLocatorInterface.cpp:211:36: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 211 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; | ^ Interface/NeighborLocatorInterface.cpp:211:45: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 211 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; | ^ Interface/NeighborLocatorInterface.cpp:390:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 390 | static char *kwlist[] = {"query_points", "rCut", NULL}; | ^ Interface/NeighborLocatorInterface.cpp:390:44: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 390 | static char *kwlist[] = {"query_points", "rCut", NULL}; | ^ Interface/NeighborLocatorInterface.cpp:481:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 481 | static char *kwlist[] = {"n", "rCut", NULL}; | ^ Interface/NeighborLocatorInterface.cpp:481:33: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 481 | static char *kwlist[] = {"n", "rCut", NULL}; | ^ 16 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Interface/OpenMPInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/OpenMPInterface.o Interface/OpenMPInterface.cpp:82:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; | ^ Interface/OpenMPInterface.cpp:82:33: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 82 | static char *kwlist[] = {"n", "noaffinity", NULL}; | ^ 2 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Interface/PTMInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/PTMInterface.o Interface/PTMInterface.cpp:95:30: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 95 | static char* argnames[] = {"atoms", "cutoff", "target_structures", | ^ Interface/PTMInterface.cpp:95:39: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 95 | static char* argnames[] = {"atoms", "cutoff", "target_structures", | ^ Interface/PTMInterface.cpp:95:49: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 95 | static char* argnames[] = {"atoms", "cutoff", "target_structures", | ^ Interface/PTMInterface.cpp:96:9: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 96 | "calculate_strains", "quick", | ^ Interface/PTMInterface.cpp:96:30: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 96 | "calculate_strains", "quick", | ^ Interface/PTMInterface.cpp:97:9: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 97 | "return_nblist", "return_mappings", NULL}; | ^ Interface/PTMInterface.cpp:97:26: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 97 | "return_nblist", "return_mappings", NULL}; | ^ Interface/PTMInterface.cpp:299:14: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 299 | assert(m < indices.size()); | ~ ^ ~~~~~~~~~~~~~~ /usr/include/assert.h:55:21: note: expanded from macro 'assert' 55 | #define assert(e) ((e) ? (void)0 : __assert(__func__, __FILE__, \ | ^ Interface/PTMInterface.cpp:301:28: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 301 | assert(idx >= 0 && idx < indices.size()); | ~~~ ^ ~~~~~~~~~~~~~~ /usr/include/assert.h:55:21: note: expanded from macro 'assert' 55 | #define assert(e) ((e) ? (void)0 : __assert(__func__, __FILE__, \ | ^ 9 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Interface/PotentialInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/PotentialInterface.o In file included from Interface/PotentialInterface.cpp:33: Interface/PythonConversions.h:48:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/PotentialInterface.cpp:33: Interface/PythonConversions.h:59:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/PotentialInterface.cpp:33: Interface/PythonConversions.h:71:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/PotentialInterface.cpp:33: Interface/PythonConversions.h:84:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/PotentialInterface.cpp:33: Interface/PythonConversions.h:97:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Interface/PotentialInterface.cpp:202:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 202 | static char *kwlist[] = {"prov", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:202:36: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 202 | static char *kwlist[] = {"prov", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:235:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 235 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:235:42: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 235 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:235:61: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 235 | static char *kwlist[] = {"parameters", "no_new_elements", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:271:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 271 | static char *kwlist[] = {"prov", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:271:36: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 271 | static char *kwlist[] = {"prov", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:292:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 292 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", | ^ Interface/PotentialInterface.cpp:292:40: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 292 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", | ^ Interface/PotentialInterface.cpp:292:45: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 292 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", | ^ Interface/PotentialInterface.cpp:292:50: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 292 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", | ^ Interface/PotentialInterface.cpp:292:55: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 292 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", | ^ Interface/PotentialInterface.cpp:292:63: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 292 | static char *kwlist[] = {"elements", "p", "q", "A", "qsi2", "r0", | ^ Interface/PotentialInterface.cpp:293:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 293 | "p3", "p4", "p5", "q3", "q4", "q5", | ^ Interface/PotentialInterface.cpp:293:34: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 293 | "p3", "p4", "p5", "q3", "q4", "q5", | ^ Interface/PotentialInterface.cpp:293:40: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 293 | "p3", "p4", "p5", "q3", "q4", "q5", | ^ Interface/PotentialInterface.cpp:293:46: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 293 | "p3", "p4", "p5", "q3", "q4", "q5", | ^ Interface/PotentialInterface.cpp:293:52: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 293 | "p3", "p4", "p5", "q3", "q4", "q5", | ^ Interface/PotentialInterface.cpp:293:58: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 293 | "p3", "p4", "p5", "q3", "q4", "q5", | ^ Interface/PotentialInterface.cpp:294:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 294 | "rcs", "rce", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:294:35: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 294 | "rcs", "rce", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:294:42: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 294 | "rcs", "rce", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:356:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 356 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", | ^ Interface/PotentialInterface.cpp:356:43: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 356 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", | ^ Interface/PotentialInterface.cpp:356:55: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 356 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", | ^ Interface/PotentialInterface.cpp:356:66: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 356 | static char *kwlist[] = {"numElements", "elements", "epsilon", "sigma", | ^ Interface/PotentialInterface.cpp:357:7: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 357 | "masses", "rCut", "modified", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:357:17: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 357 | "masses", "rCut", "modified", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:357:25: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 357 | "masses", "rCut", "modified", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:357:37: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 357 | "masses", "rCut", "modified", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:395:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 395 | static char *kwlist[] = {"numElements", | ^ Interface/PotentialInterface.cpp:396:7: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 396 | "D0", "R0", "y", "a1", "b1", "c1", | ^ Interface/PotentialInterface.cpp:396:13: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 396 | "D0", "R0", "y", "a1", "b1", "c1", | ^ Interface/PotentialInterface.cpp:396:19: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 396 | "D0", "R0", "y", "a1", "b1", "c1", | ^ Interface/PotentialInterface.cpp:396:24: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 396 | "D0", "R0", "y", "a1", "b1", "c1", | ^ Interface/PotentialInterface.cpp:396:30: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 396 | "D0", "R0", "y", "a1", "b1", "c1", | ^ Interface/PotentialInterface.cpp:396:36: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 396 | "D0", "R0", "y", "a1", "b1", "c1", | ^ Interface/PotentialInterface.cpp:397:7: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 397 | "a2", "b2", "c2", "a3", "b3", "c3", | ^ Interface/PotentialInterface.cpp:397:13: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 397 | "a2", "b2", "c2", "a3", "b3", "c3", | ^ Interface/PotentialInterface.cpp:397:19: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 397 | "a2", "b2", "c2", "a3", "b3", "c3", | ^ Interface/PotentialInterface.cpp:397:25: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 397 | "a2", "b2", "c2", "a3", "b3", "c3", | ^ Interface/PotentialInterface.cpp:397:31: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 397 | "a2", "b2", "c2", "a3", "b3", "c3", | ^ Interface/PotentialInterface.cpp:397:37: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 397 | "a2", "b2", "c2", "a3", "b3", "c3", | ^ Interface/PotentialInterface.cpp:398:7: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 398 | "elements", "masses", "rCut", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:398:19: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 398 | "elements", "masses", "rCut", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:398:29: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 398 | "elements", "masses", "rCut", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:398:37: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 398 | "elements", "masses", "rCut", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:501:4: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 501 | "P", "Q", "A", "xi", "r0", "RGL_cut", | ^ Interface/PotentialInterface.cpp:501:9: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 501 | "P", "Q", "A", "xi", "r0", "RGL_cut", | ^ Interface/PotentialInterface.cpp:501:14: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 501 | "P", "Q", "A", "xi", "r0", "RGL_cut", | ^ Interface/PotentialInterface.cpp:501:19: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 501 | "P", "Q", "A", "xi", "r0", "RGL_cut", | ^ Interface/PotentialInterface.cpp:501:25: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 501 | "P", "Q", "A", "xi", "r0", "RGL_cut", | ^ Interface/PotentialInterface.cpp:501:31: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 501 | "P", "Q", "A", "xi", "r0", "RGL_cut", | ^ Interface/PotentialInterface.cpp:502:4: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 502 | "q", "kappa", | ^ Interface/PotentialInterface.cpp:502:9: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 502 | "q", "kappa", | ^ Interface/PotentialInterface.cpp:503:4: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 503 | "D", "alpha", "R0", | ^ Interface/PotentialInterface.cpp:503:9: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 503 | "D", "alpha", "R0", | ^ Interface/PotentialInterface.cpp:503:18: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 503 | "D", "alpha", "R0", | ^ Interface/PotentialInterface.cpp:504:4: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 504 | "a", "b", "f0", "oxide_cut", | ^ Interface/PotentialInterface.cpp:504:9: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 504 | "a", "b", "f0", "oxide_cut", | ^ Interface/PotentialInterface.cpp:504:14: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 504 | "a", "b", "f0", "oxide_cut", | ^ Interface/PotentialInterface.cpp:504:20: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 504 | "a", "b", "f0", "oxide_cut", | ^ Interface/PotentialInterface.cpp:505:4: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 505 | "beta", "gamma", "interface_cut", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:505:12: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 505 | "beta", "gamma", "interface_cut", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:505:21: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 505 | "beta", "gamma", "interface_cut", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:505:38: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 505 | "beta", "gamma", "interface_cut", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:566:4: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 566 | "P", "Q", "A", "xi", "r0", "RGL_cut", | ^ Interface/PotentialInterface.cpp:566:9: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 566 | "P", "Q", "A", "xi", "r0", "RGL_cut", | ^ Interface/PotentialInterface.cpp:566:14: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 566 | "P", "Q", "A", "xi", "r0", "RGL_cut", | ^ Interface/PotentialInterface.cpp:566:19: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 566 | "P", "Q", "A", "xi", "r0", "RGL_cut", | ^ Interface/PotentialInterface.cpp:566:25: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 566 | "P", "Q", "A", "xi", "r0", "RGL_cut", | ^ Interface/PotentialInterface.cpp:566:31: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 566 | "P", "Q", "A", "xi", "r0", "RGL_cut", | ^ Interface/PotentialInterface.cpp:567:4: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 567 | "q", "kappa", | ^ Interface/PotentialInterface.cpp:567:9: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 567 | "q", "kappa", | ^ Interface/PotentialInterface.cpp:568:4: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 568 | "D", "alpha", "R0", | ^ Interface/PotentialInterface.cpp:568:9: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 568 | "D", "alpha", "R0", | ^ Interface/PotentialInterface.cpp:568:18: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 568 | "D", "alpha", "R0", | ^ Interface/PotentialInterface.cpp:569:4: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 569 | "a", "b", "f0", "oxide_cut", | ^ Interface/PotentialInterface.cpp:569:9: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 569 | "a", "b", "f0", "oxide_cut", | ^ Interface/PotentialInterface.cpp:569:14: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 569 | "a", "b", "f0", "oxide_cut", | ^ Interface/PotentialInterface.cpp:569:20: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 569 | "a", "b", "f0", "oxide_cut", | ^ Interface/PotentialInterface.cpp:570:4: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 570 | "E", "rho0", "l0", | ^ Interface/PotentialInterface.cpp:570:9: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 570 | "E", "rho0", "l0", | ^ Interface/PotentialInterface.cpp:570:17: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 570 | "E", "rho0", "l0", | ^ Interface/PotentialInterface.cpp:571:4: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 571 | "B", "C", | ^ Interface/PotentialInterface.cpp:571:9: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 571 | "B", "C", | ^ Interface/PotentialInterface.cpp:572:4: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 572 | "interface_cut", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:572:21: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 572 | "interface_cut", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:648:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 648 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", | ^ Interface/PotentialInterface.cpp:648:40: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 648 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", | ^ Interface/PotentialInterface.cpp:648:51: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 648 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", | ^ Interface/PotentialInterface.cpp:648:60: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 648 | static char *kwlist[] = {"elements", "epsilon", "alpha", "rmin", | ^ Interface/PotentialInterface.cpp:649:7: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 649 | "rCut", "modified", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:649:15: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 649 | "rCut", "modified", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:649:27: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 649 | "rCut", "modified", "verbose", NULL}; | ^ Interface/PotentialInterface.cpp:711:30: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; | ^ Interface/PotentialInterface.cpp:711:39: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 711 | static char* argnames[] = {"atoms", "force_consistent", NULL}; | ^ Interface/PotentialInterface.cpp:863:25: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 863 | for (int i = 0; i < s1.size(); i++) | ~ ^ ~~~~~~~~~ Interface/PotentialInterface.cpp:955:30: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 955 | static char* argnames[] = {"atoms", NULL}; | ^ 104 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Interface/PythonConversions.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/PythonConversions.o In file included from Interface/PythonConversions.cpp:24: Interface/PythonConversions.h:48:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/PythonConversions.cpp:24: Interface/PythonConversions.h:59:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/PythonConversions.cpp:24: Interface/PythonConversions.h:71:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/PythonConversions.cpp:24: Interface/PythonConversions.h:84:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/PythonConversions.cpp:24: Interface/PythonConversions.h:97:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 5 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Interface/RDFInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/RDFInterface.o In file included from Interface/RDFInterface.cpp:30: Interface/PythonConversions.h:48:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/RDFInterface.cpp:30: Interface/PythonConversions.h:59:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/RDFInterface.cpp:30: Interface/PythonConversions.h:71:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/RDFInterface.cpp:30: Interface/PythonConversions.h:84:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/RDFInterface.cpp:30: Interface/PythonConversions.h:97:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 5 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Interface/ToolsInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/ToolsInterface.o In file included from Interface/ToolsInterface.cpp:31: Interface/PythonConversions.h:48:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/ToolsInterface.cpp:31: Interface/PythonConversions.h:59:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/ToolsInterface.cpp:31: Interface/PythonConversions.h:71:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/ToolsInterface.cpp:31: Interface/PythonConversions.h:84:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from Interface/ToolsInterface.cpp:31: Interface/PythonConversions.h:97:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Interface/ToolsInterface.cpp:92:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; | ^ Interface/ToolsInterface.cpp:92:37: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 92 | static char *kwlist[] = {"atoms", "cutoff", NULL}; | ^ 7 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c PTM/alloy_types.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/alloy_types.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c PTM/canonical.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/canonical.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c PTM/convex_hull_incremental.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/convex_hull_incremental.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c PTM/deformation_gradient.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/deformation_gradient.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c PTM/graph_data.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/graph_data.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c PTM/index_ptm.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/index_ptm.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c PTM/initialize_data.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/initialize_data.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c PTM/neighbour_ordering.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/neighbour_ordering.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c PTM/normalize_vertices.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/normalize_vertices.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c PTM/qcprot/polar.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/qcprot/polar.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c PTM/qcprot/quat.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/qcprot/quat.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c PTM/voronoi/cell.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/voronoi/cell.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Parallel/AsapMPI.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Parallel/AsapMPI.o Parallel/AsapMPI.cpp:313:25: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 313 | ASSERT(sendbuf.size() == size * nProcessors); | ~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Parallel/AsapMPI.cpp:329:25: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 329 | ASSERT(sendbuf.size() == size); | ~~~~~~~~~~~~~~ ^ ~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 2 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Parallel/ParallelAtoms.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Parallel/ParallelAtoms.o Parallel/ParallelAtoms.cpp:266:28: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 266 | (sendlist->size() < nProcessors)); | ~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Parallel/ParallelAtoms.cpp:343:22: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 343 | for (int j = 0; j < arrays.size(); j++) | ~ ^ ~~~~~~~~~~~~~ Parallel/ParallelAtoms.cpp:363:25: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 363 | for (int j = 0; j < new_arrays.size(); j++) | ~ ^ ~~~~~~~~~~~~~~~~~ Parallel/ParallelAtoms.cpp:370:17: warning: comparison of integers of different signs: 'long' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 370 | ASSERT(b - b0 == receiveBuffer.size()); | ~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Parallel/ParallelAtoms.cpp:634:21: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 634 | for (int i = 0; i < array_names.size(); i++) | ~ ^ ~~~~~~~~~~~~~~~~~~ Parallel/ParallelAtoms.cpp:655:23: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 655 | for (int dp = 0; dp < sendlist->size(); dp++) | ~~ ^ ~~~~~~~~~~~~~~~~ Parallel/ParallelAtoms.cpp:662:29: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 662 | for (int arr = 0; arr < array_names.size(); arr++) | ~~~ ^ ~~~~~~~~~~~~~~~~~~ Parallel/ParallelAtoms.cpp:674:33: warning: comparison of integers of different signs: 'long' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 674 | ASSERT(b - &sendBuffer[0] == sendBuffer.size()); | ~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Parallel/ParallelAtoms.cpp:684:29: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 684 | for (int arr = 0; arr < array_names.size(); arr++) | ~~~ ^ ~~~~~~~~~~~~~~~~~~ Parallel/ParallelAtoms.cpp:748:23: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 748 | for (int dp = 0; dp < sendlist->size(); dp++) | ~~ ^ ~~~~~~~~~~~~~~~~ Parallel/ParallelAtoms.cpp:1139:22: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1139 | ASSERT(data.size() == nAtoms + nGhosts); | ~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Parallel/ParallelAtoms.cpp:1145:23: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 1145 | for (int dp = 0; dp < recvlist->size(); dp++) | ~~ ^ ~~~~~~~~~~~~~~~~ Parallel/ParallelAtoms.cpp:1172:22: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1172 | ASSERT(data.size() == nAtoms + nGhosts); | ~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Parallel/ParallelAtoms.cpp:1178:23: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 1178 | for (int dp = 0; dp < recvlist->size(); dp++) | ~~ ^ ~~~~~~~~~~~~~~~~ 14 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Parallel/ParallelPotential.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Parallel/ParallelPotential.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Parallel/RegularGridDecomposition.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Parallel/RegularGridDecomposition.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c ParallelInterface/AsapParallel.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/ParallelInterface/AsapParallel.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c ParallelInterface/ParallelAtomsInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/ParallelInterface/ParallelAtomsInterface.o ParallelInterface/ParallelAtomsInterface.cpp:39:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 39 | static char *kwlist[] = {"atoms", "verbose", NULL}; | ^ ParallelInterface/ParallelAtomsInterface.cpp:39:37: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 39 | static char *kwlist[] = {"atoms", "verbose", NULL}; | ^ 2 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c ParallelInterface/ParallelNeighborListInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/ParallelInterface/ParallelNeighborListInterface.o In file included from ParallelInterface/ParallelNeighborListInterface.cpp:6: Interface/PythonConversions.h:48:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 48 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from ParallelInterface/ParallelNeighborListInterface.cpp:6: Interface/PythonConversions.h:59:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 59 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(int)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from ParallelInterface/ParallelNeighborListInterface.cpp:6: Interface/PythonConversions.h:71:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 71 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size*sizeof(char)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from ParallelInterface/ParallelNeighborListInterface.cpp:6: Interface/PythonConversions.h:84:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 84 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(Vec)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ In file included from ParallelInterface/ParallelNeighborListInterface.cpp:6: Interface/PythonConversions.h:97:48: warning: comparison of integers of different signs: 'npy_intp' (aka 'long') and 'unsigned long' [-Wsign-compare] 97 | ASSERT(PyArray_NBYTES((PyArrayObject *) res) == size[0]*sizeof(SymTensor)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ ParallelInterface/ParallelNeighborListInterface.cpp:18:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; | ^ ParallelInterface/ParallelNeighborListInterface.cpp:18:36: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; | ^ ParallelInterface/ParallelNeighborListInterface.cpp:18:45: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 18 | static char *kwlist[] = {"rCut", "atoms", "driftfactor", NULL}; | ^ 8 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c ParallelInterface/ParallelPotentialInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/ParallelInterface/ParallelPotentialInterface.o ParallelInterface/ParallelPotentialInterface.cpp:48:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 48 | static char *kwlist[] = {"potential", "verbose", NULL}; | ^ ParallelInterface/ParallelPotentialInterface.cpp:48:41: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 48 | static char *kwlist[] = {"potential", "verbose", NULL}; | ^ 2 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c ParallelInterface/mpimodule.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/ParallelInterface/mpimodule.o ParallelInterface/mpimodule.cpp:194:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 194 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; | ^ ParallelInterface/mpimodule.cpp:194:33: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 194 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; | ^ ParallelInterface/mpimodule.cpp:194:40: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 194 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; | ^ ParallelInterface/mpimodule.cpp:194:47: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 194 | static char *kwlist[] = {"a", "src", "tag", "block", NULL}; | ^ ParallelInterface/mpimodule.cpp:242:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 242 | static char *kwlist[] = {"src", "tag", "block", NULL}; | ^ ParallelInterface/mpimodule.cpp:242:35: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 242 | static char *kwlist[] = {"src", "tag", "block", NULL}; | ^ ParallelInterface/mpimodule.cpp:242:42: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 242 | static char *kwlist[] = {"src", "tag", "block", NULL}; | ^ ParallelInterface/mpimodule.cpp:290:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 290 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; | ^ ParallelInterface/mpimodule.cpp:290:33: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 290 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; | ^ ParallelInterface/mpimodule.cpp:290:41: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 290 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; | ^ ParallelInterface/mpimodule.cpp:290:48: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 290 | static char *kwlist[] = {"a", "dest", "tag", "block", NULL}; | ^ ParallelInterface/mpimodule.cpp:332:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 332 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", | ^ ParallelInterface/mpimodule.cpp:332:33: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 332 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", | ^ ParallelInterface/mpimodule.cpp:332:41: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 332 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", | ^ ParallelInterface/mpimodule.cpp:332:46: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 332 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", | ^ ParallelInterface/mpimodule.cpp:332:53: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 332 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", | ^ ParallelInterface/mpimodule.cpp:332:64: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 332 | static char *kwlist[] = {"a", "dest", "b", "src", "sendtag", "recvtag", | ^ ParallelInterface/mpimodule.cpp:568:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 568 | static char *kwlist[] = {"a", "root", NULL}; | ^ ParallelInterface/mpimodule.cpp:568:33: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] 568 | static char *kwlist[] = {"a", "root", NULL}; | ^ 19 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/EMT.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/EMT.o Potentials/EMT.cpp:193:25: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 193 | for (int i = 0; i < parameters.size(); i++) | ~ ^ ~~~~~~~~~~~~~~~~~ Potentials/EMT.cpp:242:39: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 242 | if (nSize != force.size() || nAtoms != Eas.size()) | ~~~~~~ ^ ~~~~~~~~~~ Potentials/EMT.cpp:242:13: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 242 | if (nSize != force.size() || nAtoms != Eas.size()) | ~~~~~ ^ ~~~~~~~~~~~~ Potentials/EMT.cpp:251:32: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 251 | if (force.capacity() < nSize) | ~~~~~~~~~~~~~~~~ ^ ~~~~~ Potentials/EMT.cpp:262:30: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 262 | if (Eas.capacity() < nAtoms) | ~~~~~~~~~~~~~~ ^ ~~~~~~ Potentials/EMT.cpp:302:41: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 302 | if (ghostatoms && (virials.capacity() < nSize)) | ~~~~~~~~~~~~~~~~~~ ^ ~~~~~ Potentials/EMT.cpp:324:20: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 324 | ASSERT(nelements == elements_set.size()); | ~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/EMT.cpp:538:22: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 538 | ASSERT(Epot.size() == nAtoms); | ~~~~~~~~~~~ ^ ~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/EMT.cpp:1272:20: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 1272 | nSize == dEds.size()); | ~~~~~ ^ ~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/EMT.cpp:1271:48: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 1271 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && | ~~~~~~ ^ ~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/EMT.cpp:1271:21: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 1271 | ASSERT(nAtoms == radius.size() && nAtoms == Ec.size() && | ~~~~~~ ^ ~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/EMT.cpp:1437:29: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1437 | ASSERT(virials.size() == nSize); | ~~~~~~~~~~~~~~ ^ ~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/EMT.cpp:1556:29: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1556 | ASSERT(this->force.size() >= nSize); | ~~~~~~~~~~~~~~~~~~ ^ ~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/EMT.cpp:1559:29: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 1559 | ASSERT(virials.size() == nSize); | ~~~~~~~~~~~~~~ ^ ~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 14 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/EMT2013.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/EMT2013.o Potentials/EMT2013.cpp:105:20: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 105 | ASSERT(nelements == elements_set.size()); | ~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/EMT2013.cpp:569:20: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 569 | nSize == this->dEds.size()); | ~~~~~ ^ ~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/EMT2013.cpp:568:54: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && | ~~~~~~ ^ ~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/EMT2013.cpp:568:21: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 568 | ASSERT(nAtoms == this->radius.size() && nAtoms == this->Ec.size() && | ~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 4 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/EMTDefaultParameterProvider.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/EMTDefaultParameterProvider.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/EMTPythonParameterProvider.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/EMTPythonParameterProvider.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/EMTRasmussenParameterProvider.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/EMTRasmussenParameterProvider.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/LennardJones.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/LennardJones.o Potentials/LennardJones.cpp:389:14: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 389 | if (nAtoms != virials.size()) | ~~~~~~ ^ ~~~~~~~~~~~~~~ Potentials/LennardJones.cpp:499:24: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 499 | ASSERT(forces.size() == nSize); | ~~~~~~~~~~~~~ ^ ~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/LennardJones.cpp:595:32: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 595 | ASSERT(atomicEnergies.size() == nAtoms); | ~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 3 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/MetalOxideInterface.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/MetalOxideInterface.o Potentials/MetalOxideInterface.cpp:328:26: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 328 | ASSERT(forces.size() == nSize); | ~~~~~~~~~~~~~ ^ ~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/MetalOxideInterface.cpp:583:34: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 583 | ASSERT(atomicEnergies.size() == nAtoms); | ~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 2 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/MetalOxideInterface2.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/MetalOxideInterface2.o Potentials/MetalOxideInterface2.cpp:343:26: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 343 | ASSERT(forces.size() == nSize); | ~~~~~~~~~~~~~ ^ ~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/MetalOxideInterface2.cpp:565:34: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 565 | ASSERT(atomicEnergies.size() == nAtoms); | ~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 2 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/MonteCarloEMT.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/MonteCarloEMT.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/Morse.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/Morse.o Potentials/Morse.cpp:484:32: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 484 | ASSERT(atomicEnergies.size() == nAtoms); | ~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 1 warning generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/Potential.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/Potential.o Potentials/Potential.cpp:52:21: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 52 | for (int i = 0; i < virials.size(); i++) | ~ ^ ~~~~~~~~~~~~~~ 1 warning generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/RGL.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/RGL.o Potentials/RGL.cpp:127:40: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 127 | if (nSize != forces.size() || nAtoms != epot.size()) { | ~~~~~~ ^ ~~~~~~~~~~~ Potentials/RGL.cpp:127:13: warning: comparison of integers of different signs: 'int' and 'size_type' (aka 'unsigned long') [-Wsign-compare] 127 | if (nSize != forces.size() || nAtoms != epot.size()) { | ~~~~~ ^ ~~~~~~~~~~~~~ 2 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Potentials/RahmanStillingerLemberg.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/RahmanStillingerLemberg.o Potentials/RahmanStillingerLemberg.cpp:368:26: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 368 | ASSERT(forces.size() == nSize); | ~~~~~~~~~~~~~ ^ ~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Potentials/RahmanStillingerLemberg.cpp:465:34: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 465 | ASSERT(atomicEnergies.size() == nAtoms); | ~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 2 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Tools/CNA.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools/CNA.o Tools/CNA.cpp:60:32: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] 60 | for (unsigned int a2 = 0; a2 < nTotal; a2++) | ~~ ^ ~~~~~~ Tools/CNA.cpp:70:11: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] 70 | if (a1 < a2) | ~~ ^ ~~ Tools/CNA.cpp:90:38: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] 90 | for (unsigned int j1 = 0; j1 < j2; j1++) | ~~ ^ ~~ 3 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Tools/CoordinationNumbers.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools/CoordinationNumbers.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Tools/FullCNA.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools/FullCNA.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Tools/GetNeighborList.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools/GetNeighborList.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Tools/RawRadialDistribution.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools/RawRadialDistribution.o Tools/RawRadialDistribution.cpp:55:24: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 55 | ASSERT(result.size() == nGroups); | ~~~~~~~~~~~~~ ^ ~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ Tools/RawRadialDistribution.cpp:56:24: warning: comparison of integers of different signs: 'size_type' (aka 'unsigned long') and 'int' [-Wsign-compare] 56 | ASSERT(counts.size() == nGroups); | ~~~~~~~~~~~~~ ^ ~~~~~~~ Basics/Exception.h:157:26: note: expanded from macro 'ASSERT' 157 | #define ASSERT(EX) if (!(EX)) \ | ^~ 2 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c Tools/SecondaryNeighborLocator.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools/SecondaryNeighborLocator.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -UNDEBUG -IBasics -IPotentials -IInterface -IBrenner -ITools -IPTM -IPTM/qcprot -IPTM/voronoi -I/usr/local/lib/python3.11/site-packages/numpy/core/include -IParallel -IParallelInterface -I/usr/local/include/python3.11 -c VersionInfo_autogen/version_pkg-builder.dan.net.uk_p.cpp -o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/VersionInfo_autogen/version_pkg-builder.dan.net.uk_p.o c++ -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/AsapObject.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/Debug.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/DynamicAtoms.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/Exception.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/ImageAtoms.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/ImagePotential.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/Langevin.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/Matrix3x3.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/MolecularDynamics.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/MonteCarloAtoms.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/NeighborCellLocator.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/NeighborList.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/NeighborList2013.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/NormalAtoms.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/RandomNumbers.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/Timing.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/Vec.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Basics/VelocityVerlet.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/BrennerPotential.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/bcuint.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/caguts.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/expand.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/inter2d_iv.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/mtable.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/pibond.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/radic.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/radicdata.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/sili_germ.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Brenner/spgch.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/DynamicsInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/EMTParameterProviderInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/ExceptionInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/NeighborLocatorInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/OpenMPInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/PTMInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/PotentialInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/PythonConversions.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/RDFInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Interface/ToolsInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/alloy_types.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/canonical.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/convex_hull_incremental.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/deformation_gradient.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/graph_data.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/index_ptm.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/initialize_data.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/neighbour_ordering.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/normalize_vertices.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/qcprot/polar.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/qcprot/quat.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/PTM/voronoi/cell.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Parallel/AsapMPI.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Parallel/ParallelAtoms.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Parallel/ParallelPotential.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Parallel/RegularGridDecomposition.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/ParallelInterface/AsapParallel.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/ParallelInterface/ParallelAtomsInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/ParallelInterface/ParallelNeighborListInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/ParallelInterface/ParallelPotentialInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/ParallelInterface/mpimodule.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/EMT.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/EMT2013.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/EMTDefaultParameterProvider.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/EMTPythonParameterProvider.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/EMTRasmussenParameterProvider.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/LennardJones.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/MetalOxideInterface.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/MetalOxideInterface2.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/MonteCarloEMT.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/Morse.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/Potential.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/RGL.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Potentials/RahmanStillingerLemberg.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools/CNA.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools/CoordinationNumbers.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools/FullCNA.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools/GetNeighborList.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools/RawRadialDistribution.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/Tools/SecondaryNeighborLocator.o build/temp.freebsd-14.2-RELEASE-amd64-cpython-311/VersionInfo_autogen/version_pkg-builder.dan.net.uk_p.o -L/usr/local/lib -lm -o build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/_asap.cpython-311.so running build_scripts creating build/scripts-3.11 copying and adjusting scripts/asap-qsub -> build/scripts-3.11 copying and adjusting scripts/asap-sbatch -> build/scripts-3.11 changing mode of build/scripts-3.11/asap-qsub from 644 to 755 changing mode of build/scripts-3.11/asap-sbatch from 644 to 755 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-asap3-3.12.8_3 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> py311-asap3-3.12.8_3 depends on package: py311-ase>0 - not found ===> Installing existing package /packages/All/py311-ase-3.23.0_1.pkg [pkg-builder.dan.net.uk] Installing py311-ase-3.23.0_1... [pkg-builder.dan.net.uk] `-- Installing nwchem-7.2.3_2... [pkg-builder.dan.net.uk] | `-- Installing blas-3.12.1... [pkg-builder.dan.net.uk] | `-- Extracting blas-3.12.1: ..... done [pkg-builder.dan.net.uk] | `-- Installing ga-5.8.2_5... [pkg-builder.dan.net.uk] | | `-- Installing lapack-3.12.1... [pkg-builder.dan.net.uk] | | `-- Extracting lapack-3.12.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing scalapack-2.2.2... [pkg-builder.dan.net.uk] | | `-- Extracting scalapack-2.2.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting ga-5.8.2_5: .......... done [pkg-builder.dan.net.uk] | `-- Installing nwchem-data-7.2.3... [pkg-builder.dan.net.uk] | `-- Extracting nwchem-data-7.2.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting nwchem-7.2.3_2: .. done [pkg-builder.dan.net.uk] `-- Installing py311-matplotlib-3.8.0_1... [pkg-builder.dan.net.uk] | `-- Installing fontconfig-2.15.0_3,1... [pkg-builder.dan.net.uk] | | `-- Installing expat-2.7.1... [pkg-builder.dan.net.uk] | | `-- Extracting expat-2.7.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing freetype2-2.13.3... [pkg-builder.dan.net.uk] | | `-- Extracting freetype2-2.13.3: .......... done [pkg-builder.dan.net.uk] | `-- Extracting fontconfig-2.15.0_3,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing png-1.6.47... [pkg-builder.dan.net.uk] | `-- Extracting png-1.6.47: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-certifi-2025.1.31... [pkg-builder.dan.net.uk] | `-- Extracting py311-certifi-2025.1.31: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-contourpy-1.3.2... [pkg-builder.dan.net.uk] | `-- Extracting py311-contourpy-1.3.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-cycler-0.12.1... [pkg-builder.dan.net.uk] | `-- Extracting py311-cycler-0.12.1: ......... done [pkg-builder.dan.net.uk] | `-- Installing py311-fonttools-4.57.0... [pkg-builder.dan.net.uk] | | `-- Installing py311-fs2-2.4.16_1... [pkg-builder.dan.net.uk] | | `-- Installing py311-appdirs-1.4.4_1... [pkg-builder.dan.net.uk] | | `-- Extracting py311-appdirs-1.4.4_1: ........ done [pkg-builder.dan.net.uk] | | `-- Installing py311-pytz-2024.2_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting py311-pytz-2024.2_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-six-1.17.0... [pkg-builder.dan.net.uk] | | `-- Extracting py311-six-1.17.0: ........ done [pkg-builder.dan.net.uk] | | `-- Extracting py311-fs2-2.4.16_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-lxml-4.9.3_1... [pkg-builder.dan.net.uk] | | `-- Installing libxslt-1.1.42... [pkg-builder.dan.net.uk] | | | `-- Installing libgcrypt-1.11.0... [pkg-builder.dan.net.uk] | | | `-- Installing libgpg-error-1.55... [pkg-builder.dan.net.uk] | | | `-- Extracting libgpg-error-1.55: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting libgcrypt-1.11.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libxslt-1.1.42: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py311-lxml-4.9.3_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-unicodedata2-16.0.0... [pkg-builder.dan.net.uk] | | `-- Extracting py311-unicodedata2-16.0.0: ...... done [pkg-builder.dan.net.uk] | `-- Extracting py311-fonttools-4.57.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-importlib-resources-6.5.2... [pkg-builder.dan.net.uk] | `-- Extracting py311-importlib-resources-6.5.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-kiwisolver-1.4.8,1... [pkg-builder.dan.net.uk] | `-- Extracting py311-kiwisolver-1.4.8,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-packaging-24.2... [pkg-builder.dan.net.uk] | `-- Extracting py311-packaging-24.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-pillow-11.0.0... [pkg-builder.dan.net.uk] | | `-- Installing jpeg-turbo-3.1.0... [pkg-builder.dan.net.uk] | | `-- Extracting jpeg-turbo-3.1.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing lcms2-2.17... [pkg-builder.dan.net.uk] | | `-- Installing tiff-4.7.0... [pkg-builder.dan.net.uk] | | | `-- Installing jbigkit-2.1_3... [pkg-builder.dan.net.uk] | | | `-- Extracting jbigkit-2.1_3: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing lerc-4.0.0... [pkg-builder.dan.net.uk] | | | `-- Extracting lerc-4.0.0: ..... done [pkg-builder.dan.net.uk] | | | `-- Installing libdeflate-1.22... [pkg-builder.dan.net.uk] | | | `-- Extracting libdeflate-1.22: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting tiff-4.7.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting lcms2-2.17: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libimagequant-4.3.4_2... [pkg-builder.dan.net.uk] | | `-- Extracting libimagequant-4.3.4_2: ...... done [pkg-builder.dan.net.uk] | | `-- Installing libraqm-0.10.2... [pkg-builder.dan.net.uk] | | `-- Installing fribidi-1.0.16... [pkg-builder.dan.net.uk] | | `-- Extracting fribidi-1.0.16: .......... done [pkg-builder.dan.net.uk] | | `-- Installing harfbuzz-10.3.0... [pkg-builder.dan.net.uk] | | | `-- Installing glib-2.84.1_2,2... [pkg-builder.dan.net.uk] | | | `-- Installing libiconv-1.17_1... [pkg-builder.dan.net.uk] | | | `-- Extracting libiconv-1.17_1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libinotify-20240724_1... [pkg-builder.dan.net.uk] | | | `-- Extracting libinotify-20240724_1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing pcre2-10.45_1... [pkg-builder.dan.net.uk] | | | `-- Extracting pcre2-10.45_1: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting glib-2.84.1_2,2: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing graphite2-1.3.14... [pkg-builder.dan.net.uk] | | | `-- Extracting graphite2-1.3.14: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting harfbuzz-10.3.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libraqm-0.10.2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libxcb-1.17.0... [pkg-builder.dan.net.uk] | | `-- Installing libXau-1.0.11... [pkg-builder.dan.net.uk] | | `-- Extracting libXau-1.0.11: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXdmcp-1.1.5... [pkg-builder.dan.net.uk] | | | `-- Installing xorgproto-2024.1... [pkg-builder.dan.net.uk] | | | `-- Extracting xorgproto-2024.1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg-builder.dan.net.uk] | | `-- Extracting libxcb-1.17.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing openjpeg-2.5.3... [pkg-builder.dan.net.uk] | | `-- Extracting openjpeg-2.5.3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-olefile-0.46_1... [pkg-builder.dan.net.uk] | | `-- Extracting py311-olefile-0.46_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-tkinter-3.11.12_10... [pkg-builder.dan.net.uk] | | `-- Installing tcl86-8.6.16_2... [pkg-builder.dan.net.uk] | | `-- Extracting tcl86-8.6.16_2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing tk86-8.6.16... [pkg-builder.dan.net.uk] | | | `-- Installing libX11-1.8.12,1... [pkg-builder.dan.net.uk] | | | `-- Extracting libX11-1.8.12,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libXScrnSaver-1.2.4_1... [pkg-builder.dan.net.uk] | | | `-- Installing libXext-1.3.6,1... [pkg-builder.dan.net.uk] | | | `-- Extracting libXext-1.3.6,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting libXScrnSaver-1.2.4_1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libXft-2.3.8... [pkg-builder.dan.net.uk] | | | `-- Installing libXrender-0.9.12... [pkg-builder.dan.net.uk] | | | `-- Extracting libXrender-0.9.12: ....... done [pkg-builder.dan.net.uk] | | | `-- Extracting libXft-2.3.8: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting tk86-8.6.16: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py311-tkinter-3.11.12_10: ...... done [pkg-builder.dan.net.uk] | | `-- Installing webp-1.5.0... [pkg-builder.dan.net.uk] | | `-- Installing freeglut-3.2.1... [pkg-builder.dan.net.uk] | | | `-- Installing libGLU-9.0.3... [pkg-builder.dan.net.uk] | | | `-- Installing libglvnd-1.7.0... [pkg-builder.dan.net.uk] | | | `-- Extracting libglvnd-1.7.0: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting libGLU-9.0.3: ..... done [pkg-builder.dan.net.uk] | | | `-- Installing libICE-1.1.1,1... [pkg-builder.dan.net.uk] | | | `-- Extracting libICE-1.1.1,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libXi-1.8.1,1... [pkg-builder.dan.net.uk] | | | `-- Installing libXfixes-6.0.1... [pkg-builder.dan.net.uk] | | | `-- Extracting libXfixes-6.0.1: ....... done [pkg-builder.dan.net.uk] | | | `-- Extracting libXi-1.8.1,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libXrandr-1.5.4... [pkg-builder.dan.net.uk] | | | `-- Extracting libXrandr-1.5.4: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libXxf86vm-1.1.5... [pkg-builder.dan.net.uk] | | | `-- Extracting libXxf86vm-1.1.5: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting freeglut-3.2.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing giflib-5.2.2... [pkg-builder.dan.net.uk] | | `-- Extracting giflib-5.2.2: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting webp-1.5.0: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py311-pillow-11.0.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-pluggy-1.5.0... [pkg-builder.dan.net.uk] | `-- Extracting py311-pluggy-1.5.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-pyparsing-3.2.3... [pkg-builder.dan.net.uk] | `-- Extracting py311-pyparsing-3.2.3: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-python-dateutil-2.9.0... [pkg-builder.dan.net.uk] | `-- Extracting py311-python-dateutil-2.9.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-tornado-6.4... [pkg-builder.dan.net.uk] | `-- Extracting py311-tornado-6.4: .......... done [pkg-builder.dan.net.uk] | `-- Installing qhull-8.0.2_3,1... [pkg-builder.dan.net.uk] | `-- Extracting qhull-8.0.2_3,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py311-matplotlib-3.8.0_1: .......... done [pkg-builder.dan.net.uk] `-- Installing py311-scipy-1.11.1_4,1... [pkg-builder.dan.net.uk] `-- Extracting py311-scipy-1.11.1_4,1: .......... done [pkg-builder.dan.net.uk] Extracting py311-ase-3.23.0_1: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from scalapack-2.2.2: -- Please test your scalapack installation Example programs are located at /usr/local/share/examples/SCALAPACK Test programs are located at /usr/local/share/SCALAPACK/TESTING Example: % cd /usr/local/share/SCALAPACK/TESTING % /usr/local/bin/mpirun -np 4 ./xcbrd % /usr/local/bin/mpirun -np 4 ./xcdblu etc., etc. ... to perform all the tests, % cd /usr/local/share/SCALAPACK/TESTING % csh % foreach i (x*) ? /usr/local/bin/mpirun -np 4 ./$i >& ~/$i.log ? end % /usr/local/bin/mpdallexit If you're using OpenMPI, use this instead: % cd /usr/local/share/SCALAPACK/TESTING % LD_LIBRARY_PATH=/usr/local/mpi/openmpi/lib/ export LD_LIBRARY_PATH % PATH=$PATH:/usr/local/mpi/openmpi/bin/ export PATH % mpirun -np 4 ./xcbrd % mpirun -np 4 ./xcdblu etc., etc. ... You can change -np 4 to any number to meet your environment. See files at /usr/local/share/doc/scalapack for detail. ===== Message from freetype2-2.13.3: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from libimagequant-4.3.4_2: -- ===> NOTICE: The libimagequant port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from libinotify-20240724_1: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from freeglut-3.2.1: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. ===> py311-asap3-3.12.8_3 depends on package: py311-ase>0 - found ===> Returning to build of py311-asap3-3.12.8_3 ===> py311-asap3-3.12.8_3 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-asap3-3.12.8_3 ===> Generating temporary packing list /bin/sh: pkg-config: not found Asap version number: 3.12.8 customize-local.py not found - this is OK. customize-pkg-builder.dan.net.uk.py not found - this is OK. Reading customization from customize.py Setting CC=mpicxx -pthread Setting CXX=mpicxx -pthread Setting LDSHARED=mpicxx -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong Setting LDCXXSHARED=mpicxx -pthread -shared Identifying source files Identifying Python submodules running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext running build_scripts running install_lib creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/_asap.cpython-311.so -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/memory.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis/particle.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis/cutcluster.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis/rdf.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis/clusterposition.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis/ptm.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis/findcluster.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis/localstructure.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/analysis/averagepositions.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/mpi.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/version.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md/md.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md/langevin.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md/nptberendsen.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md/verlet.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md/nvtberendsen.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md/npt.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/md/velocitydistribution.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/EMT2013Parameters.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/io/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/io/bundletrajectory.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/io/cpu_setup.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/io/ReadOldFiles.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/io/trajectory.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/io copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/timing.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/cluster.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/montecarlo copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/montecarlo/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/montecarlo copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/montecarlo/surface.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/montecarlo copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/montecarlo/atom.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/montecarlo copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/Logger.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/AdsCalc.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/mc_result.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/atommontecarlodata.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/langmuirExpression.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/resizecluster.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/data copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/data/symmetry.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/data copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/data/au.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/data copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/data/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/data copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/data/fcc.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/data copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/nanoparticle_mc/clusteratom.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ElasticConstants.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/EMT_two_atom_test.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/niflheim.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization/Quantities.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization/RGL.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization/Performance.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization/Optimization.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization/SearchParallel.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization/ScipyFmin.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization/EMT.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization/Sampling.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization/Search.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/ParameterOptimization/GetParameters.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/Timing.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/SurfaceEnergies.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/MaterialProperties.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/AsapFileToTrajectory.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/OptimizationDatabase.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Tools/AtomicEnergies.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Base.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Basin.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Metropolis.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves/Base.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves/Data copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves/Data/symmetry.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves/Data copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves/Data/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves/Data copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves/Data/fcc.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves/Data copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Moves/Surface.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/MonteCarlo/Start.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/VelocityDistribution.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/multidislocation.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline/plane_utils.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline/helpers.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline/energy.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline/nanocrystalline.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline/quat_utils.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline/nanocrystalline_orig.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline/grain_structures.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/nanocrystalline/dislocated.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/displacementfield.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/setup/dislocation.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/constraints.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/testtools.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/visualize copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/visualize/primiplotter.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/visualize copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/visualize/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/visualize copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/visualize/fieldplotter.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/visualize copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/visualize/colortable.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/visualize creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/optimize copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/optimize/fire.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/optimize copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/optimize/optimize.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/optimize copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/optimize/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/optimize copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/optimize/mdmin.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/optimize copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/EMT2011_py.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/fixepydoc.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/GuptaParameters.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/EMT2011Parameters.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3 creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/ParallelListOfAtoms.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/CheckArray.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/MonteCarloAtoms.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/ListOfElements.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/BuiltinPotentials.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/UtilityFunctions.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/EMTParameters.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/OpenKIMcalculator.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/checkversion.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/Subject.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal creating /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/Compatibility copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/Compatibility/__init__.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/Compatibility copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/Builtins.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/Threads.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal copying build/lib.freebsd-14.2-RELEASE-amd64-cpython-311/asap3/Internal/Collector.py -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/memory.py to memory.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis/particle.py to particle.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis/cutcluster.py to cutcluster.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis/rdf.py to rdf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis/clusterposition.py to clusterposition.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis/ptm.py to ptm.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis/findcluster.py to findcluster.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis/localstructure.py to localstructure.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/analysis/averagepositions.py to averagepositions.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/mpi.py to mpi.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/version.py to version.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md/md.py to md.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md/langevin.py to langevin.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md/nptberendsen.py to nptberendsen.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md/verlet.py to verlet.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md/nvtberendsen.py to nvtberendsen.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md/npt.py to npt.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/md/velocitydistribution.py to velocitydistribution.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/EMT2013Parameters.py to EMT2013Parameters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/io/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/io/bundletrajectory.py to bundletrajectory.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/io/cpu_setup.py to cpu_setup.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/io/ReadOldFiles.py to ReadOldFiles.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/io/trajectory.py to trajectory.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/timing.py to timing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/cluster.py to cluster.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/montecarlo/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/montecarlo/surface.py to surface.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/montecarlo/atom.py to atom.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/Logger.py to Logger.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/AdsCalc.py to AdsCalc.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/mc_result.py to mc_result.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/atommontecarlodata.py to atommontecarlodata.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/langmuirExpression.py to langmuirExpression.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/resizecluster.py to resizecluster.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/data/symmetry.py to symmetry.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/data/au.py to au.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/data/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/data/fcc.py to fcc.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/nanoparticle_mc/clusteratom.py to clusteratom.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ElasticConstants.py to ElasticConstants.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/EMT_two_atom_test.py to EMT_two_atom_test.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/niflheim.py to niflheim.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization/Quantities.py to Quantities.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization/RGL.py to RGL.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization/Performance.py to Performance.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization/Optimization.py to Optimization.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization/SearchParallel.py to SearchParallel.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization/ScipyFmin.py to ScipyFmin.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization/EMT.py to EMT.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization/Sampling.py to Sampling.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization/Search.py to Search.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/ParameterOptimization/GetParameters.py to GetParameters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/Timing.py to Timing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/SurfaceEnergies.py to SurfaceEnergies.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/MaterialProperties.py to MaterialProperties.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/AsapFileToTrajectory.py to AsapFileToTrajectory.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/OptimizationDatabase.py to OptimizationDatabase.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Tools/AtomicEnergies.py to AtomicEnergies.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Base.py to Base.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Basin.py to Basin.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Metropolis.py to Metropolis.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves/Base.py to Base.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves/Data/symmetry.py to symmetry.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves/Data/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves/Data/fcc.py to fcc.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Moves/Surface.py to Surface.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/MonteCarlo/Start.py to Start.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/VelocityDistribution.py to VelocityDistribution.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/multidislocation.py to multidislocation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline/plane_utils.py to plane_utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline/helpers.py to helpers.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline/energy.py to energy.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline/nanocrystalline.py to nanocrystalline.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline/quat_utils.py to quat_utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline/nanocrystalline_orig.py to nanocrystalline_orig.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline/grain_structures.py to grain_structures.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/nanocrystalline/dislocated.py to dislocated.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/displacementfield.py to displacementfield.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/setup/dislocation.py to dislocation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/constraints.py to constraints.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/testtools.py to testtools.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/visualize/primiplotter.py to primiplotter.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/visualize/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/visualize/fieldplotter.py to fieldplotter.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/visualize/colortable.py to colortable.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/optimize/fire.py to fire.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/optimize/optimize.py to optimize.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/optimize/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/optimize/mdmin.py to mdmin.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/EMT2011_py.py to EMT2011_py.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/fixepydoc.py to fixepydoc.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/GuptaParameters.py to GuptaParameters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/EMT2011Parameters.py to EMT2011Parameters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/ParallelListOfAtoms.py to ParallelListOfAtoms.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/CheckArray.py to CheckArray.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/MonteCarloAtoms.py to MonteCarloAtoms.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/ListOfElements.py to ListOfElements.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/BuiltinPotentials.py to BuiltinPotentials.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/UtilityFunctions.py to UtilityFunctions.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/EMTParameters.py to EMTParameters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/OpenKIMcalculator.py to OpenKIMcalculator.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/checkversion.py to checkversion.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/Subject.py to Subject.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/Compatibility/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/Builtins.py to Builtins.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/Threads.py to Threads.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3/Internal/Collector.py to Collector.cpython-311.pyc writing byte-compilation script '/tmp/tmpavllp_c_.py' /usr/local/bin/python3.11 /tmp/tmpavllp_c_.py removing /tmp/tmpavllp_c_.py running install_egg_info running egg_info creating asap3.egg-info writing asap3.egg-info/PKG-INFO writing dependency_links to asap3.egg-info/dependency_links.txt writing top-level names to asap3.egg-info/top_level.txt writing manifest file 'asap3.egg-info/SOURCES.txt' reading manifest file 'asap3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'Test/testVerlet.pickle' warning: no files found matching 'Test/TestParallel-openmpi.sh' adding license file 'LICENSE' adding license file 'LICENSE.LESSER' writing manifest file 'asap3.egg-info/SOURCES.txt' Copying asap3.egg-info to /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/lib/python3.11/site-packages/asap3-3.12.8-py3.11.egg-info running install_scripts copying build/scripts-3.11/asap-qsub -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/bin copying build/scripts-3.11/asap-sbatch -> /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/bin changing mode of /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/bin/asap-qsub to 755 changing mode of /wrkdirs/usr/ports/science/py-asap3/work-py311/stage/usr/local/bin/asap-sbatch to 755 writing list of installed files to '/wrkdirs/usr/ports/science/py-asap3/work-py311/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/asap-qsub --> bin/asap-qsub-3.11 Link: @bin/asap-qsub --> bin/asap-qsub-3.11 Move: bin/asap-sbatch --> bin/asap-sbatch-3.11 Link: @bin/asap-sbatch --> bin/asap-sbatch-3.11 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-06T14:16:12+0000' 'PKG_NOTE_ports_top_git_hash=5529c5919b' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=06a08e69f3' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-asap3-3.12.8_3 ===> Building py311-asap3-3.12.8_3 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-asap3-3.12.8_3 build of science/py-asap3@py311 | py311-asap3-3.12.8_3 ended at Tue May 6 15:20:43 BST 2025 build time: 00:04:32