=>> Building science/openbabel build started at Thu May 1 07:32:55 BST 2025 port directory: /usr/ports/science/openbabel package name: openbabel-3.1.1.178_3 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2009 Feb 16 09:27 /usr/ports/science/openbabel/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: fa53920e72 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 04 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/04/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for openbabel-3.1.1.178_3: CAIRO=on: PNG support via cairo library GUI=on: GUI (Graphical User Interface) support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/openbabel/work/.cache HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/openbabel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/openbabel/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh WX_CONFIG=/usr/local/bin/wxgtk3u-3.0-config --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/openbabel/work/.cache HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/openbabel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/openbabel/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/openbabel/work/stage WX_CONFIG=/usr/local/bin/wxgtk3u-3.0-config PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 " CXXSTD=c++11 BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- VERSION=3.1.1 CAIRO="" NO_CAIRO="@comment " GUI="" NO_GUI="@comment " CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/openbabel" EXAMPLESDIR="share/examples/openbabel" DATADIR="share/openbabel" WWWDIR="www/openbabel" ETCDIR="etc/openbabel" --End PLIST_SUB-- --SUB_LIST-- CAIRO="" NO_CAIRO="@comment " GUI="" NO_GUI="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openbabel DOCSDIR=/usr/local/share/doc/openbabel EXAMPLESDIR=/usr/local/share/examples/openbabel WWWDIR=/usr/local/www/openbabel ETCDIR=/usr/local/etc/openbabel --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> openbabel-3.1.1.178_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> openbabel-3.1.1.178_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of openbabel-3.1.1.178_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by openbabel-3.1.1.178_3 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by openbabel-3.1.1.178_3 for building => SHA256 Checksum OK for openbabel-openbabel-3-1-1-178-g2b211d6ac_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by openbabel-3.1.1.178_3 for building ===> Extracting for openbabel-3.1.1.178_3 => SHA256 Checksum OK for openbabel-openbabel-3-1-1-178-g2b211d6ac_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for openbabel-3.1.1.178_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> openbabel-3.1.1.178_3 depends on package: rapidjson>0 - not found ===> Installing existing package /packages/All/rapidjson-1.1.0.709.pkg [pkg-builder.dan.net.uk] Installing rapidjson-1.1.0.709... [pkg-builder.dan.net.uk] Extracting rapidjson-1.1.0.709: .......... done ===> openbabel-3.1.1.178_3 depends on package: rapidjson>0 - found ===> Returning to build of openbabel-3.1.1.178_3 ===> openbabel-3.1.1.178_3 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.6.pkg [pkg-builder.dan.net.uk] Installing cmake-core-3.31.6... [pkg-builder.dan.net.uk] `-- Installing expat-2.7.1... [pkg-builder.dan.net.uk] `-- Extracting expat-2.7.1: .......... done [pkg-builder.dan.net.uk] `-- Installing jsoncpp-1.9.6_1... [pkg-builder.dan.net.uk] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg-builder.dan.net.uk] `-- Installing libidn2-2.3.8... [pkg-builder.dan.net.uk] | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] | `-- Installing libunistring-1.3... [pkg-builder.dan.net.uk] | `-- Extracting libunistring-1.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting libidn2-2.3.8: .......... done [pkg-builder.dan.net.uk] `-- Installing libuv-1.51.0... [pkg-builder.dan.net.uk] `-- Extracting libuv-1.51.0: .......... done [pkg-builder.dan.net.uk] `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] `-- Installing rhash-1.4.4_1... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg-builder.dan.net.uk] `-- Extracting rhash-1.4.4_1: .......... done [pkg-builder.dan.net.uk] Extracting cmake-core-3.31.6: .......... done ===> openbabel-3.1.1.178_3 depends on file: /usr/local/bin/cmake - found ===> Returning to build of openbabel-3.1.1.178_3 ===> openbabel-3.1.1.178_3 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,4.pkg [pkg-builder.dan.net.uk] Installing ninja-1.11.1,4... [pkg-builder.dan.net.uk] `-- Installing python311-3.11.12... [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.8... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.8: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-4.0.0... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-4.0.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.13_2... [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.13_2: .......... done [pkg-builder.dan.net.uk] `-- Extracting python311-3.11.12: .......... done [pkg-builder.dan.net.uk] Extracting ninja-1.11.1,4: ..... done ===== Message from python311-3.11.12: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> openbabel-3.1.1.178_3 depends on executable: ninja - found ===> Returning to build of openbabel-3.1.1.178_3 ===> openbabel-3.1.1.178_3 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.4.0_4.pkg [pkg-builder.dan.net.uk] Installing eigen-3.4.0_4... [pkg-builder.dan.net.uk] `-- Installing blas-3.12.1... [pkg-builder.dan.net.uk] | `-- Installing gcc13-13.3.0_2... [pkg-builder.dan.net.uk] | | `-- Installing binutils-2.44,1... [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.7... [pkg-builder.dan.net.uk] | | | `-- Installing liblz4-1.10.0,1... [pkg-builder.dan.net.uk] | | | `-- Extracting liblz4-1.10.0,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.7: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting binutils-2.44,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | `-- Installing mpfr-4.2.2,1... [pkg-builder.dan.net.uk] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] | `-- Extracting gcc13-13.3.0_2: .......... done [pkg-builder.dan.net.uk] `-- Extracting blas-3.12.1: ..... done [pkg-builder.dan.net.uk] `-- Installing lapack-3.12.1... [pkg-builder.dan.net.uk] `-- Extracting lapack-3.12.1: .......... done [pkg-builder.dan.net.uk] Extracting eigen-3.4.0_4: .......... done ===== Message from gcc13-13.3.0_2: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> openbabel-3.1.1.178_3 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of openbabel-3.1.1.178_3 ===> openbabel-3.1.1.178_3 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-2.3.0_1,1.pkg [pkg-builder.dan.net.uk] Installing pkgconf-2.3.0_1,1... [pkg-builder.dan.net.uk] Extracting pkgconf-2.3.0_1,1: .......... done ===> openbabel-3.1.1.178_3 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of openbabel-3.1.1.178_3 ===> openbabel-3.1.1.178_3 depends on package: perl5>=5.36<5.37 - not found ===> Installing existing package /packages/All/perl5-5.36.3_3.pkg [pkg-builder.dan.net.uk] Installing perl5-5.36.3_3... [pkg-builder.dan.net.uk] Extracting perl5-5.36.3_3: .......... done ===> openbabel-3.1.1.178_3 depends on package: perl5>=5.36<5.37 - found ===> Returning to build of openbabel-3.1.1.178_3 ===> openbabel-3.1.1.178_3 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> openbabel-3.1.1.178_3 depends on file: /usr/local/bin/ccache - found ===> Returning to build of openbabel-3.1.1.178_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> openbabel-3.1.1.178_3 depends on shared library: libmaeparser.so - not found ===> Installing existing package /packages/All/maeparser-1.3.2.pkg [pkg-builder.dan.net.uk] Installing maeparser-1.3.2... [pkg-builder.dan.net.uk] `-- Installing boost-libs-1.87.0_1... [pkg-builder.dan.net.uk] | `-- Installing icu-76.1,1... [pkg-builder.dan.net.uk] | `-- Extracting icu-76.1,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting boost-libs-1.87.0_1: .......... done [pkg-builder.dan.net.uk] Extracting maeparser-1.3.2: .......... done ===== Message from boost-libs-1.87.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> openbabel-3.1.1.178_3 depends on shared library: libmaeparser.so - found (/usr/local/lib/libmaeparser.so) ===> Returning to build of openbabel-3.1.1.178_3 ===> openbabel-3.1.1.178_3 depends on shared library: libcoordgen.so - not found ===> Installing existing package /packages/All/coordgenlibs-3.0.2.pkg [pkg-builder.dan.net.uk] Installing coordgenlibs-3.0.2... [pkg-builder.dan.net.uk] Extracting coordgenlibs-3.0.2: .......... done ===> openbabel-3.1.1.178_3 depends on shared library: libcoordgen.so - found (/usr/local/lib/libcoordgen.so) ===> Returning to build of openbabel-3.1.1.178_3 ===> openbabel-3.1.1.178_3 depends on shared library: libboost_thread.so - found (/usr/local/lib/libboost_thread.so) ===> openbabel-3.1.1.178_3 depends on shared library: libcairo.so - not found ===> Installing existing package /packages/All/cairo-1.18.2,3.pkg [pkg-builder.dan.net.uk] Installing cairo-1.18.2,3... [pkg-builder.dan.net.uk] `-- Installing fontconfig-2.15.0_3,1... [pkg-builder.dan.net.uk] | `-- Installing freetype2-2.13.3... [pkg-builder.dan.net.uk] | `-- Extracting freetype2-2.13.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting fontconfig-2.15.0_3,1: .......... done [pkg-builder.dan.net.uk] `-- Installing glib-2.84.1_2,2... [pkg-builder.dan.net.uk] | `-- Installing libiconv-1.17_1... [pkg-builder.dan.net.uk] | `-- Extracting libiconv-1.17_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libinotify-20240724_1... [pkg-builder.dan.net.uk] | `-- Extracting libinotify-20240724_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing pcre2-10.45_1... [pkg-builder.dan.net.uk] | `-- Extracting pcre2-10.45_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py311-packaging-24.2... [pkg-builder.dan.net.uk] | `-- Extracting py311-packaging-24.2: .......... done [pkg-builder.dan.net.uk] `-- Extracting glib-2.84.1_2,2: .......... done [pkg-builder.dan.net.uk] `-- Installing libX11-1.8.12,1... [pkg-builder.dan.net.uk] | `-- Installing libxcb-1.17.0... [pkg-builder.dan.net.uk] | | `-- Installing libXau-1.0.11... [pkg-builder.dan.net.uk] | | `-- Extracting libXau-1.0.11: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXdmcp-1.1.5... [pkg-builder.dan.net.uk] | | `-- Installing xorgproto-2024.1... [pkg-builder.dan.net.uk] | | `-- Extracting xorgproto-2024.1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg-builder.dan.net.uk] | `-- Extracting libxcb-1.17.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting libX11-1.8.12,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXext-1.3.6,1... [pkg-builder.dan.net.uk] `-- Extracting libXext-1.3.6,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXrender-0.9.12... [pkg-builder.dan.net.uk] `-- Extracting libXrender-0.9.12: ....... done [pkg-builder.dan.net.uk] `-- Installing lzo2-2.10_1... [pkg-builder.dan.net.uk] `-- Extracting lzo2-2.10_1: .......... done [pkg-builder.dan.net.uk] `-- Installing pixman-0.44.2... [pkg-builder.dan.net.uk] `-- Extracting pixman-0.44.2: ...... done [pkg-builder.dan.net.uk] `-- Installing png-1.6.47... [pkg-builder.dan.net.uk] `-- Extracting png-1.6.47: .......... done [pkg-builder.dan.net.uk] Extracting cairo-1.18.2,3: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from freetype2-2.13.3: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from libinotify-20240724_1: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===> openbabel-3.1.1.178_3 depends on shared library: libcairo.so - found (/usr/local/lib/libcairo.so) ===> Returning to build of openbabel-3.1.1.178_3 ===> openbabel-3.1.1.178_3 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.11.9.pkg [pkg-builder.dan.net.uk] Installing libxml2-2.11.9... [pkg-builder.dan.net.uk] Extracting libxml2-2.11.9: .......... done ===> openbabel-3.1.1.178_3 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of openbabel-3.1.1.178_3 ===> openbabel-3.1.1.178_3 depends on shared library: libwx_baseu-3.0.so - not found ===> Installing existing package /packages/All/wx30-gtk3-3.0.5.1_6.pkg [pkg-builder.dan.net.uk] Installing wx30-gtk3-3.0.5.1_6... [pkg-builder.dan.net.uk] `-- Installing at-spi2-core-2.54.1_1... [pkg-builder.dan.net.uk] | `-- Installing dbus-1.16.2_2,1... [pkg-builder.dan.net.uk] | | `-- Installing libICE-1.1.1,1... [pkg-builder.dan.net.uk] | | `-- Extracting libICE-1.1.1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libSM-1.2.6,1... [pkg-builder.dan.net.uk] | | `-- Extracting libSM-1.2.6,1: ........ done ===> Creating groups Creating group 'messagebus' with gid '556' ===> Creating users Creating user 'messagebus' with uid '556' [pkg-builder.dan.net.uk] | `-- Extracting dbus-1.16.2_2,1: ......... done [pkg-builder.dan.net.uk] | `-- Installing libXi-1.8.1,1... [pkg-builder.dan.net.uk] | | `-- Installing libXfixes-6.0.1... [pkg-builder.dan.net.uk] | | `-- Extracting libXfixes-6.0.1: ....... done [pkg-builder.dan.net.uk] | `-- Extracting libXi-1.8.1,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libXtst-1.2.4... [pkg-builder.dan.net.uk] | `-- Extracting libXtst-1.2.4: .......... done [pkg-builder.dan.net.uk] `-- Extracting at-spi2-core-2.54.1_1: .......... done [pkg-builder.dan.net.uk] `-- Installing gdk-pixbuf2-2.42.12_1... [pkg-builder.dan.net.uk] | `-- Installing jpeg-turbo-3.1.0... [pkg-builder.dan.net.uk] | `-- Extracting jpeg-turbo-3.1.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing shared-mime-info-2.4_1... [pkg-builder.dan.net.uk] | `-- Extracting shared-mime-info-2.4_1: ......... done [pkg-builder.dan.net.uk] | `-- Installing tiff-4.7.0... [pkg-builder.dan.net.uk] | | `-- Installing jbigkit-2.1_3... [pkg-builder.dan.net.uk] | | `-- Extracting jbigkit-2.1_3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing lerc-4.0.0... [pkg-builder.dan.net.uk] | | `-- Extracting lerc-4.0.0: ..... done [pkg-builder.dan.net.uk] | | `-- Installing libdeflate-1.22... [pkg-builder.dan.net.uk] | | `-- Extracting libdeflate-1.22: .......... done [pkg-builder.dan.net.uk] | `-- Extracting tiff-4.7.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting gdk-pixbuf2-2.42.12_1: .......... done [pkg-builder.dan.net.uk] `-- Installing gstreamer1-1.26.0_1... [pkg-builder.dan.net.uk] | `-- Installing libunwind-20240221_2... [pkg-builder.dan.net.uk] | `-- Extracting libunwind-20240221_2: .......... done [pkg-builder.dan.net.uk] `-- Extracting gstreamer1-1.26.0_1: .......... done [pkg-builder.dan.net.uk] `-- Installing gstreamer1-plugins-1.26.0... [pkg-builder.dan.net.uk] | `-- Installing iso-codes-4.15.0... [pkg-builder.dan.net.uk] | `-- Extracting iso-codes-4.15.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing libdrm-2.4.123,1... [pkg-builder.dan.net.uk] | | `-- Installing libpciaccess-0.18.1_1... [pkg-builder.dan.net.uk] | | `-- Installing hwdata-0.394,1... [pkg-builder.dan.net.uk] | | `-- Extracting hwdata-0.394,1: ...... done [pkg-builder.dan.net.uk] | | `-- Extracting libpciaccess-0.18.1_1: ..... done [pkg-builder.dan.net.uk] | `-- Extracting libdrm-2.4.123,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing orc-0.4.41... [pkg-builder.dan.net.uk] | `-- Extracting orc-0.4.41: .......... done [pkg-builder.dan.net.uk] `-- Extracting gstreamer1-plugins-1.26.0: .......... done [pkg-builder.dan.net.uk] `-- Installing gtk3-3.24.48... [pkg-builder.dan.net.uk] | `-- Installing adwaita-icon-theme-42.0... [pkg-builder.dan.net.uk] | | `-- Installing gtk-update-icon-cache-3.24.42... [pkg-builder.dan.net.uk] | | `-- Extracting gtk-update-icon-cache-3.24.42: .......... done [pkg-builder.dan.net.uk] | `-- Extracting adwaita-icon-theme-42.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing colord-1.4.7_3... [pkg-builder.dan.net.uk] | | `-- Installing lcms2-2.17... [pkg-builder.dan.net.uk] | | `-- Extracting lcms2-2.17: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libgudev-237... [pkg-builder.dan.net.uk] | | `-- Installing libudev-devd-0.6.0... [pkg-builder.dan.net.uk] | | `-- Extracting libudev-devd-0.6.0: ..... done [pkg-builder.dan.net.uk] | | `-- Extracting libgudev-237: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libgusb-0.4.9_1... [pkg-builder.dan.net.uk] | | `-- Installing json-glib-1.10.6... [pkg-builder.dan.net.uk] | | | `-- Installing gobject-introspection-1.84.0,1... [pkg-builder.dan.net.uk] | | | `-- Extracting gobject-introspection-1.84.0,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting json-glib-1.10.6: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libgusb-0.4.9_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing polkit-125_1... [pkg-builder.dan.net.uk] | | `-- Installing duktape-lib-2.7.0... [pkg-builder.dan.net.uk] | | `-- Extracting duktape-lib-2.7.0: ...... done ===> Creating groups Creating group 'polkitd' with gid '565' ===> Creating users Creating user 'polkitd' with uid '565' [pkg-builder.dan.net.uk] | | `-- Extracting polkit-125_1: ......... done [pkg-builder.dan.net.uk] | | `-- Installing sqlite3-3.46.1_1,1... [pkg-builder.dan.net.uk] | | `-- Installing libedit-3.1.20250104,1... [pkg-builder.dan.net.uk] | | `-- Extracting libedit-3.1.20250104,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting sqlite3-3.46.1_1,1: ......... done ===> Creating groups Creating group 'colord' with gid '970' ===> Creating users Creating user 'colord' with uid '970' [pkg-builder.dan.net.uk] | `-- Extracting colord-1.4.7_3: .......... done [pkg-builder.dan.net.uk] | `-- Installing cups-2.4.11_1... [pkg-builder.dan.net.uk] | | `-- Installing avahi-app-0.8_6... [pkg-builder.dan.net.uk] | | `-- Installing dbus-glib-0.114... [pkg-builder.dan.net.uk] | | `-- Extracting dbus-glib-0.114: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gdbm-1.25... [pkg-builder.dan.net.uk] | | `-- Extracting gdbm-1.25: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gnome_subr-1.0... [pkg-builder.dan.net.uk] | | `-- Extracting gnome_subr-1.0: . done [pkg-builder.dan.net.uk] | | `-- Installing libdaemon-0.14_1... [pkg-builder.dan.net.uk] | | `-- Extracting libdaemon-0.14_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libevent-2.1.12... [pkg-builder.dan.net.uk] | | `-- Extracting libevent-2.1.12: .......... done ===> Creating groups Creating group 'avahi' with gid '558' ===> Creating users Creating user 'avahi' with uid '558' [pkg-builder.dan.net.uk] | | `-- Extracting avahi-app-0.8_6: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gnutls-3.8.9... [pkg-builder.dan.net.uk] | | `-- Installing libtasn1-4.20.0_1... [pkg-builder.dan.net.uk] | | `-- Extracting libtasn1-4.20.0_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing nettle-3.10.1... [pkg-builder.dan.net.uk] | | `-- Extracting nettle-3.10.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing p11-kit-0.25.5... [pkg-builder.dan.net.uk] | | `-- Extracting p11-kit-0.25.5: .......... done [pkg-builder.dan.net.uk] | | `-- Installing unbound-1.23.0... [pkg-builder.dan.net.uk] | | | `-- Installing libnghttp2-1.65.0... [pkg-builder.dan.net.uk] | | | `-- Extracting libnghttp2-1.65.0: ....... done ===> Creating groups Using existing group 'unbound' ===> Creating users Using existing user 'unbound' [pkg-builder.dan.net.uk] | | `-- Extracting unbound-1.23.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting gnutls-3.8.9: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libpaper-1.1.28_1... [pkg-builder.dan.net.uk] | | `-- Extracting libpaper-1.1.28_1: .......... done ===> Creating groups Creating group 'cups' with gid '193' ===> Creating users Creating user 'cups' with uid '193' [pkg-builder.dan.net.uk] | `-- Extracting cups-2.4.11_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing fribidi-1.0.16... [pkg-builder.dan.net.uk] | `-- Extracting fribidi-1.0.16: .......... done [pkg-builder.dan.net.uk] | `-- Installing gsettings-desktop-schemas-47.1_1... [pkg-builder.dan.net.uk] | `-- Extracting gsettings-desktop-schemas-47.1_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing harfbuzz-10.3.0... [pkg-builder.dan.net.uk] | | `-- Installing graphite2-1.3.14... [pkg-builder.dan.net.uk] | | `-- Extracting graphite2-1.3.14: .......... done [pkg-builder.dan.net.uk] | `-- Extracting harfbuzz-10.3.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing hicolor-icon-theme-0.18... [pkg-builder.dan.net.uk] | `-- Extracting hicolor-icon-theme-0.18: . done [pkg-builder.dan.net.uk] | `-- Installing libXcomposite-0.4.6_1,1... [pkg-builder.dan.net.uk] | `-- Extracting libXcomposite-0.4.6_1,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libXcursor-1.2.2... [pkg-builder.dan.net.uk] | `-- Extracting libXcursor-1.2.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing libXdamage-1.1.6... [pkg-builder.dan.net.uk] | `-- Extracting libXdamage-1.1.6: ...... done [pkg-builder.dan.net.uk] | `-- Installing libXinerama-1.1.5,1... [pkg-builder.dan.net.uk] | `-- Extracting libXinerama-1.1.5,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libXrandr-1.5.4... [pkg-builder.dan.net.uk] | `-- Extracting libXrandr-1.5.4: .......... done [pkg-builder.dan.net.uk] | `-- Installing libepoxy-1.5.10... [pkg-builder.dan.net.uk] | | `-- Installing libglvnd-1.7.0... [pkg-builder.dan.net.uk] | | `-- Extracting libglvnd-1.7.0: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libepoxy-1.5.10: .......... done [pkg-builder.dan.net.uk] | `-- Installing librsvg2-rust-2.60.0_1... [pkg-builder.dan.net.uk] | | `-- Installing dav1d-1.5.1... [pkg-builder.dan.net.uk] | | `-- Extracting dav1d-1.5.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing pango-1.56.1... [pkg-builder.dan.net.uk] | | `-- Installing libXft-2.3.8... [pkg-builder.dan.net.uk] | | `-- Extracting libXft-2.3.8: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libthai-0.1.29_1... [pkg-builder.dan.net.uk] | | | `-- Installing libdatrie-0.2.13_2... [pkg-builder.dan.net.uk] | | | `-- Extracting libdatrie-0.2.13_2: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libthai-0.1.29_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting pango-1.56.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting librsvg2-rust-2.60.0_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libxkbcommon-1.8.1_2... [pkg-builder.dan.net.uk] | | `-- Installing wayland-1.23.1... [pkg-builder.dan.net.uk] | | `-- Installing libepoll-shim-0.0.20240608... [pkg-builder.dan.net.uk] | | `-- Extracting libepoll-shim-0.0.20240608: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting wayland-1.23.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing xkeyboard-config-2.41_4... [pkg-builder.dan.net.uk] | | `-- Extracting xkeyboard-config-2.41_4: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libxkbcommon-1.8.1_2: .......... done [pkg-builder.dan.net.uk] `-- Extracting gtk3-3.24.48: .......... done [pkg-builder.dan.net.uk] `-- Installing libGLU-9.0.3... [pkg-builder.dan.net.uk] `-- Extracting libGLU-9.0.3: ..... done [pkg-builder.dan.net.uk] `-- Installing libXxf86vm-1.1.5... [pkg-builder.dan.net.uk] `-- Extracting libXxf86vm-1.1.5: .......... done [pkg-builder.dan.net.uk] `-- Installing libmspack-0.11alpha... [pkg-builder.dan.net.uk] `-- Extracting libmspack-0.11alpha: ...... done [pkg-builder.dan.net.uk] `-- Installing libsoup-2.74.3... [pkg-builder.dan.net.uk] | `-- Installing glib-networking-2.80.1_1... [pkg-builder.dan.net.uk] | | `-- Installing libproxy-0.5.9_1... [pkg-builder.dan.net.uk] | | `-- Installing curl-8.13.0_1... [pkg-builder.dan.net.uk] | | | `-- Installing brotli-1.1.0,1... [pkg-builder.dan.net.uk] | | | `-- Extracting brotli-1.1.0,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libssh2-1.11.1,3... [pkg-builder.dan.net.uk] | | | `-- Extracting libssh2-1.11.1,3: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting curl-8.13.0_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libproxy-0.5.9_1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting glib-networking-2.80.1_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libgcrypt-1.11.0... [pkg-builder.dan.net.uk] | | `-- Installing libgpg-error-1.55... [pkg-builder.dan.net.uk] | | `-- Extracting libgpg-error-1.55: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libgcrypt-1.11.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing libpsl-0.21.5_2... [pkg-builder.dan.net.uk] | `-- Extracting libpsl-0.21.5_2: ........ done [pkg-builder.dan.net.uk] `-- Extracting libsoup-2.74.3: .......... done [pkg-builder.dan.net.uk] `-- Installing webkit2-gtk_40-2.46.6... [pkg-builder.dan.net.uk] | `-- Installing enchant2-2.2.15_6... [pkg-builder.dan.net.uk] | | `-- Installing hunspell-1.7.2_1... [pkg-builder.dan.net.uk] | | `-- Extracting hunspell-1.7.2_1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting enchant2-2.2.15_6: .......... done [pkg-builder.dan.net.uk] | `-- Installing geoclue-2.7.2... [pkg-builder.dan.net.uk] | | `-- Installing libsoup3-3.6.5_2... [pkg-builder.dan.net.uk] | | `-- Extracting libsoup3-3.6.5_2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting geoclue-2.7.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing graphene-1.10.8_1... [pkg-builder.dan.net.uk] | | `-- Installing py311-pygobject-3.50.0... [pkg-builder.dan.net.uk] | | `-- Installing py311-cairo-1.28.0,1... [pkg-builder.dan.net.uk] | | `-- Extracting py311-cairo-1.28.0,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing pygobject-common-3.50.0... [pkg-builder.dan.net.uk] | | `-- Extracting pygobject-common-3.50.0: .. done [pkg-builder.dan.net.uk] | | `-- Extracting py311-pygobject-3.50.0: .......... done [pkg-builder.dan.net.uk] | `-- Extracting graphene-1.10.8_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing gstreamer1-plugins-bad-1.26.0... [pkg-builder.dan.net.uk] | `-- Extracting gstreamer1-plugins-bad-1.26.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing gstreamer1-plugins-gl-1.26.0... [pkg-builder.dan.net.uk] | `-- Extracting gstreamer1-plugins-gl-1.26.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing harfbuzz-icu-10.3.0... [pkg-builder.dan.net.uk] | `-- Extracting harfbuzz-icu-10.3.0: ..... done [pkg-builder.dan.net.uk] | `-- Installing hyphen-2.8.8... [pkg-builder.dan.net.uk] | `-- Extracting hyphen-2.8.8: .......... done [pkg-builder.dan.net.uk] | `-- Installing libavif-1.2.1... [pkg-builder.dan.net.uk] | | `-- Installing libyuv-0.0.1789_2... [pkg-builder.dan.net.uk] | | `-- Extracting libyuv-0.0.1789_2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing svt-av1-3.0.2... [pkg-builder.dan.net.uk] | | `-- Extracting svt-av1-3.0.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libavif-1.2.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libjxl-0.11.1_1... [pkg-builder.dan.net.uk] | | `-- Installing giflib-5.2.2... [pkg-builder.dan.net.uk] | | `-- Extracting giflib-5.2.2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing highway-1.2.0... [pkg-builder.dan.net.uk] | | `-- Extracting highway-1.2.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing openexr-3.3.3... [pkg-builder.dan.net.uk] | | `-- Installing Imath-3.1.12... [pkg-builder.dan.net.uk] | | `-- Extracting Imath-3.1.12: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting openexr-3.3.3: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libjxl-0.11.1_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libsecret-0.20.5_3... [pkg-builder.dan.net.uk] | `-- Extracting libsecret-0.20.5_3: .......... done [pkg-builder.dan.net.uk] | `-- Installing libsysinfo-0.0.3_3... [pkg-builder.dan.net.uk] | `-- Extracting libsysinfo-0.0.3_3: ...... done [pkg-builder.dan.net.uk] | `-- Installing libxslt-1.1.42... [pkg-builder.dan.net.uk] | `-- Extracting libxslt-1.1.42: .......... done [pkg-builder.dan.net.uk] | `-- Installing mesa-libs-24.1.7_1... [pkg-builder.dan.net.uk] | | `-- Installing libxshmfence-1.3.2... [pkg-builder.dan.net.uk] | | `-- Extracting libxshmfence-1.3.2: ...... done [pkg-builder.dan.net.uk] | `-- Extracting mesa-libs-24.1.7_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing webp-1.5.0... [pkg-builder.dan.net.uk] | | `-- Installing freeglut-3.2.1... [pkg-builder.dan.net.uk] | | `-- Extracting freeglut-3.2.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting webp-1.5.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing woff2-1.0.2_5... [pkg-builder.dan.net.uk] | `-- Extracting woff2-1.0.2_5: .......... done [pkg-builder.dan.net.uk] `-- Extracting webkit2-gtk_40-2.46.6: .......... done [pkg-builder.dan.net.uk] Extracting wx30-gtk3-3.0.5.1_6: .......... done ==> Running trigger: gdk-pixbuf-query-loaders.ucl Generating gdk-pixbuf modules cache ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: gtk-update-icon-cache.ucl Generating GTK icon cache for /usr/local/share/icons/hicolor Generating GTK icon cache for /usr/local/share/icons/Adwaita ==> Running trigger: glib-schemas.ucl Compiling glib schemas Warning: Schema ?org.gnome.system.locale? has path ?/system/locale/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy? has path ?/system/proxy/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.http? has path ?/system/proxy/http/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.https? has path ?/system/proxy/https/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.ftp? has path ?/system/proxy/ftp/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.socks? has path ?/system/proxy/socks/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. ==> Running trigger: shared-mime-info.ucl Building the Shared MIME-Info database cache ===== Message from duktape-lib-2.7.0: -- ===> NOTICE: The duktape-lib port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from wayland-1.23.1: -- Wayland requires XDG_RUNTIME_DIR to be defined to a path that will contain "wayland-%d" unix(4) sockets. This is usually handled by consolekit2 (via ck-launch-session) or pam_xdg (via login). ===== Message from libxkbcommon-1.8.1_2: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg ===== Message from libsoup-2.74.3: -- libsoup can use NTLM authentication if it is compiled with the SMB option. To use it, you must install a port that provides NTLM, like net/samba412 or net/samba413. ===== Message from libjxl-0.11.1_1: -- Additional packages recommended for new users: - imlib2-jxl (e.g., feh, scrot) - kf5-kimageformats (e.g., nomacs, flameshot, skanlite) - gimp-jxl-plugin ===== Message from freeglut-3.2.1: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. ===> openbabel-3.1.1.178_3 depends on shared library: libwx_baseu-3.0.so - found (/usr/local/lib/libwx_baseu-3.0.so) ===> Returning to build of openbabel-3.1.1.178_3 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for openbabel-3.1.1.178_3 /usr/bin/sed -i.bak -e '/pkgconfig/s,${LIB_INSTALL_DIR},libdata,' /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/CMakeLists.txt ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/openbabel/work/.build CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is Clang 18.1.6 -- The CXX compiler identification is Clang 18.1.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. -- Found LibXml2: /usr/local/lib/libxml2.so (found version "2.11.9") -- Found ZLIB: /usr/lib/libz.so (found version "1.3.1") -- Found wxWidgets: -L/usr/local/lib;-pthread;;;-lwx_baseu-3.0;-lwx_gtk3u_core-3.0;-lwx_gtk3u_adv-3.0 (found version "3.0.5") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed CMake Warning (dev) at CMakeLists.txt:318 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/local/include (found version "1.87.0") found components: program_options iostreams regex -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") CMake Warning (dev) at CMakeLists.txt:434 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/local/include (found version "1.87.0") found components: filesystem iostreams unit_test_framework regex -- maeparser include dir set as '/usr/local/include' -- maeparser libraries set as '/usr/local/lib/libmaeparser.so' -- Maestro formats will be supported. Using MaeParser libraries at /usr/local/lib/libmaeparser.so. -- coordgen include dir set as /usr/local/include -- coordgen libraries set as '/usr/local/lib/libcoordgen.so' -- Coordinate generation with Coordgen will be supported. Using Coordgen libraries at /usr/local/lib/libcoordgen.so. -- Found PkgConfig: /usr/local/bin/pkgconf (found version "2.3.0") -- Found RapidJSON: /usr/local/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/local/include -- Checking for module 'cairo' -- Found cairo, version 1.18.2 -- Found Cairo: /usr/local/lib/libcairo.so -- Cairo found. PNG output will be supported. -- Found Perl: /usr/local/bin/perl (found version "5.36.3") CMake Warning (dev) at src/CMakeLists.txt:6 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/local/include (found suitable version "1.87.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Found Threads: TRUE CMake Warning (dev) at tools/CMakeLists.txt:6 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/local/include (found version "1.87.0") found components: program_options iostreams regex -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (4.6s) -- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /wrkdirs/usr/ports/science/openbabel/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for openbabel-3.1.1.178_3 [ 0% 1/476] cd /wrkdirs/usr/ports/science/openbabel/work/.build/data && /usr/local/bin/perl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/bin2hex.pl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/atomization-energies.txt AtomicHeatOfFormationData AtomicHeatOfFormationData > atomizationenergies.h [ 0% 2/476] cd /wrkdirs/usr/ports/science/openbabel/work/.build/data && /usr/local/bin/perl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/bin2hex.pl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/atomtyp.txt AtomTypeData AtomTypeData > atomtyp.h [ 0% 3/476] cd /wrkdirs/usr/ports/science/openbabel/work/.build/data && /usr/local/bin/perl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/bin2hex.pl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/bondtyp.txt BondTypeData BondTypeData > bondtyp.h [ 0% 4/476] cd /wrkdirs/usr/ports/science/openbabel/work/.build/data && /usr/local/bin/perl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/bin2hex.pl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/phmodel.txt PhModelData PhModelData > phmodeldata.h [ 1% 5/476] cd /wrkdirs/usr/ports/science/openbabel/work/.build/data && /usr/local/bin/perl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/bin2hex.pl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/resdata.txt ResidueData ResidueData > resdata.h [ 1% 6/476] cd /wrkdirs/usr/ports/science/openbabel/work/.build/data && /usr/local/bin/perl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/bin2hex.pl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/ringtyp.txt RingTypeData RingTypeData > ringtyp.h [ 1% 7/476] cd /wrkdirs/usr/ports/science/openbabel/work/.build/data && /usr/local/bin/perl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/bin2hex.pl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/space-groups.txt SpaceGroupsData SpaceGroupsData > spacegroups.h [ 1% 8/476] cd /wrkdirs/usr/ports/science/openbabel/work/.build/data && /usr/local/bin/perl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/bin2hex.pl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/torlib.txt TorsionDefaults TorsionDefaults > torlib.h [ 1% 9/476] cd /wrkdirs/usr/ports/science/openbabel/work/.build/data && /usr/local/bin/perl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/bin2hex.pl /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data/types.txt TypesData TypesData > types.h [ 2% 10/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF src/CMakeFiles/openbabel.dir/alias.cpp.o.d -o src/CMakeFiles/openbabel.dir/alias.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/alias.cpp [ 2% 11/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/atom.cpp.o -MF src/CMakeFiles/openbabel.dir/atom.cpp.o.d -o src/CMakeFiles/openbabel.dir/atom.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/atom.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/atom.cpp:826:62: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] 826 | if ((*i)->IsInRing(GetIdx()) && static_cast((*i)->PathSize()) == size) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here 65 | OB_DEPRECATED_MSG("Use Size() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/atom.cpp:1143:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 1143 | if (IsNearZero(v1.length(), 1.0e-3) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/atom.cpp:1144:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 1144 | || IsNearZero(v2.length(), 1.0e-3)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ 3 warnings generated. [ 2% 12/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/base.cpp.o -MF src/CMakeFiles/openbabel.dir/base.cpp.o.d -o src/CMakeFiles/openbabel.dir/base.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/base.cpp [ 2% 13/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/bitvec.cpp.o -MF src/CMakeFiles/openbabel.dir/bitvec.cpp.o.d -o src/CMakeFiles/openbabel.dir/bitvec.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/bitvec.cpp [ 2% 14/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/bond.cpp.o -MF src/CMakeFiles/openbabel.dir/bond.cpp.o.d -o src/CMakeFiles/openbabel.dir/bond.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/bond.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/bond.cpp:124:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 124 | if (IsNearZero(v3.length_2())) { // too small to normalize, move the atoms apart | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ 1 warning generated. [ 3% 15/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF src/CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/bondtyper.cpp [ 3% 16/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF src/CMakeFiles/openbabel.dir/builder.cpp.o.d -o src/CMakeFiles/openbabel.dir/builder.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:310:19: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 310 | if (bond2 == VZero || v1 == VZero) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:310:34: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 310 | if (bond2 == VZero || v1 == VZero) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:359:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 359 | if (bond1 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:361:26: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 361 | else if (bond2 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:430:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 430 | if (bond1 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:432:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 432 | else if (bond2 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:434:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 434 | else if (bond3 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:450:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 450 | if (bond1 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:452:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 452 | else if (bond2 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:454:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 454 | else if (bond3 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:469:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 469 | if (bond1 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:471:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 471 | else if (bond2 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:473:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 473 | else if (bond3 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:494:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 494 | if (bond1 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:496:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 496 | else if (bond2 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:498:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 498 | else if (bond3 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:514:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 514 | if (bond1 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:516:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 516 | else if (bond2 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:518:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 518 | else if (bond3 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:520:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 520 | else if (bond4 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:533:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 533 | if (bond1 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:535:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 535 | else if (bond2 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:537:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 537 | else if (bond3 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:539:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 539 | else if (bond4 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:564:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 564 | if (bond1 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:566:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 566 | else if (bond2 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:568:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 568 | else if (bond3 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:570:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 570 | else if (bond4 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:572:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 572 | else if (bond5 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:660:21: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 660 | if (bond1 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:718:23: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 718 | if (bond1 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:720:28: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 720 | else if (bond2 == VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:1089:9: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] 1089 | mol.GetFirstAtom()->GetHyb(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/mol.h:279:5: note: 'GetFirstAtom' has been explicitly marked deprecated here 279 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/builder.cpp:1427:17: warning: 'operator==' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 1427 | if (bond1 == VZero) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:273:5: note: 'operator==' has been explicitly marked deprecated here 273 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 34 warnings generated. 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/usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF src/CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/fingerprint.cpp [ 5% 25/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF src/CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o src/CMakeFiles/openbabel.dir/forcefield.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp In file included from /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:34: /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ In file included from /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:34: /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:482:31: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] 482 | rab = OBForceField::VectorLengthDerivative(da, db); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here 1523 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:499:33: warning: 'VectorAngleDerivative' is deprecated [-Wdeprecated-declarations] 499 | theta = OBForceField::VectorAngleDerivative(da, db, dc); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:1539:5: note: 'VectorAngleDerivative' has been explicitly marked deprecated here 1539 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:518:33: warning: 'VectorTorsionDerivative' is deprecated [-Wdeprecated-declarations] 518 | theta = OBForceField::VectorTorsionDerivative(da, db, dc, dd); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:1572:5: note: 'VectorTorsionDerivative' has been explicitly marked deprecated here 1572 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1180:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1180 | rl.SetFixAtoms(fixed); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1193:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 1193 | combinations *= rotor->GetResolution().size(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1213:33: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 1213 | rotorKeys.AddRotor(rotor->GetResolution().size()); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1301:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1301 | rl.SetFixAtoms(fixed); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1372:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 1372 | for (j = 0; j < rotor->GetResolution().size(); j++) { // For each rotor position | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1444:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1444 | rl.SetFixAtoms(fixed); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1457:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 1457 | combinations *= rotor->GetResolution().size(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1482:52: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 1482 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1622:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 1622 | rl.SetFixAtoms(fixed); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1635:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 1635 | combinations *= rotor->GetResolution().size(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1685:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 1685 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1712:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 1712 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1719:43: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 1719 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1720:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] 1720 | if (IsNear(worstE, bestE, 1.0e-3)) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1721:31: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 1721 | weight = 1 / rotor->GetResolution().size(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:1761:45: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 1761 | for (unsigned int j = 0; j < rotor->GetResolution().size(); j++) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:2420:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 2420 | if (IsNearZero(scale)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:2539:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] 2539 | if (IsNear(e_n2, e_n1, 1.0e-3)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:2657:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] 2657 | if (IsNear(e_n2, e_n1, 1.0e-7)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:2725:13: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] 2725 | if (IsNear(e_n2, e_n1, 1.0e-7)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:2838:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] 2838 | if (IsNear(e_n2, _e_n1, _econv) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:3039:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] 3039 | if (IsNear(e_n2, _e_n1, _econv) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:3719:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:3719:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 3719 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:3735:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 3735 | if (IsNearZero(length)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:3789:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:3789:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 3789 | if (IsNearZero(l_ij) || IsNearZero(l_jk)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:3802:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 3802 | if (IsNearZero(length)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:3949:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 3949 | if (IsNearZero(length_ji)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:3962:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 3962 | if (IsNearZero(length_jk)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:3973:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 3973 | if (IsNearZero(length_jl)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:3991:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:3991:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 3991 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4006:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4006:27: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4006 | if (IsNearZero(dl) || IsNearZero(fabs(dl - M_PI))) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4067:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4067 | if (IsNearZero(length_ji)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4076:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4076 | if (IsNearZero(length_jk)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4083:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4083 | if (IsNearZero(length_jl)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4097:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4097:30: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4097 | if (IsNearZero(theta) || IsNearZero(fabs(theta - M_PI))) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4195:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4195:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4195:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4195 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4285:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4285:29: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefield.cpp:4285:49: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 4285 | if (IsNearZero(l_ij) || IsNearZero(l_jk) || IsNearZero(l_kl) ) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ 51 warnings generated. [ 5% 26/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/format.cpp.o -MF src/CMakeFiles/openbabel.dir/format.cpp.o.d -o src/CMakeFiles/openbabel.dir/format.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/format.cpp [ 5% 27/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF src/CMakeFiles/openbabel.dir/generic.cpp.o.d -o src/CMakeFiles/openbabel.dir/generic.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/generic.cpp [ 5% 28/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF src/CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o src/CMakeFiles/openbabel.dir/graphsym.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/graphsym.cpp [ 6% 29/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/grid.cpp.o -MF src/CMakeFiles/openbabel.dir/grid.cpp.o.d -o src/CMakeFiles/openbabel.dir/grid.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/grid.cpp In file included from /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/grid.cpp:24: /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ In file included from /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/grid.cpp:24: /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/grid.cpp:82:5: warning: '_ival' is deprecated [-Wdeprecated-declarations] 82 | _ival=nullptr; | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ 3 warnings generated. [ 6% 30/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF src/CMakeFiles/openbabel.dir/griddata.cpp.o.d -o src/CMakeFiles/openbabel.dir/griddata.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/griddata.cpp In file included from /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/griddata.cpp:27: /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:118:11: warning: '_ival' is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ In file included from /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/griddata.cpp:27: /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:118:28: warning: '_ival' is deprecated [-Wdeprecated-declarations] 118 | if (_ival) delete [] _ival; | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/grid.h:105:5: note: '_ival' has been explicitly marked deprecated here 105 | OB_DEPRECATED int *_ival; //!< for integer values \deprecated | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ 2 warnings generated. [ 6% 31/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -MF src/CMakeFiles/openbabel.dir/isomorphism.cpp.o.d -o src/CMakeFiles/openbabel.dir/isomorphism.cpp.o -c 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src/CMakeFiles/openbabel.dir/kekulize.cpp.o.d -o src/CMakeFiles/openbabel.dir/kekulize.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/kekulize.cpp [ 6% 33/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/locale.cpp.o -MF src/CMakeFiles/openbabel.dir/locale.cpp.o.d -o src/CMakeFiles/openbabel.dir/locale.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/locale.cpp [ 7% 34/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/matrix.cpp.o -MF src/CMakeFiles/openbabel.dir/matrix.cpp.o.d -o src/CMakeFiles/openbabel.dir/matrix.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/matrix.cpp [ 7% 35/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/mcdlutil.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/mcdlutil.cpp:5032:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] 5032 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ 1 warning generated. [ 7% 36/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/molchrg.cpp.o -MF src/CMakeFiles/openbabel.dir/molchrg.cpp.o.d -o src/CMakeFiles/openbabel.dir/molchrg.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/molchrg.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/molchrg.cpp:297:10: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 297 | if (!IsNearZero(val[2])) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ 1 warning generated. [ 7% 37/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF src/CMakeFiles/openbabel.dir/mol.cpp.o.d -o src/CMakeFiles/openbabel.dir/mol.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/mol.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/mol.cpp:2786:29: warning: 'operator!=' is deprecated: Use vector3::IsApprox() instead. [-Wdeprecated-declarations] 2786 | if (atom->GetVector() != VZero) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/vector3.h:278:5: note: 'operator!=' has been explicitly marked deprecated here 278 | OB_DEPRECATED_MSG("Use vector3::IsApprox() instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/mol.cpp:2801:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 2801 | if (!hasX && !IsNearZero(atom->x())) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/mol.cpp:2803:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 2803 | if (!hasY && !IsNearZero(atom->y())) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/mol.cpp:2824:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 2824 | if (!hasX && !IsNearZero(atom->x())) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/mol.cpp:2826:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 2826 | if (!hasY && !IsNearZero(atom->y())) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/mol.cpp:2828:23: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 2828 | if (!hasZ && !IsNearZero(atom->z())) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/mol.cpp:3250:24: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] 3250 | if ((*ringit)->PathSize() == 5) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here 65 | OB_DEPRECATED_MSG("Use Size() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/mol.cpp:3272:29: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] 3272 | else if ((*ringit)->PathSize() == 6) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here 65 | OB_DEPRECATED_MSG("Use Size() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/mol.cpp:3341:31: warning: 'PathSize' is deprecated: Use Size() instead [-Wdeprecated-declarations] 3341 | loopSize = (*ringit)->PathSize(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/ring.h:65:5: note: 'PathSize' has been explicitly marked deprecated here 65 | OB_DEPRECATED_MSG("Use Size() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 9 warnings generated. [ 7% 38/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF src/CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o src/CMakeFiles/openbabel.dir/obconversion.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/obconversion.cpp In file included from /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/obconversion.cpp:53: In file included from /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/zipstream.h:333: /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/zipstreamimpl.h:179:9: warning: reference cannot be bound to dereferenced null pointer in well-defined C++ code; pointer may be assumed to always convert to true [-Wundefined-bool-conversion] 179 | if(&_ostream) | ~~ ^~~~~~~~ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/zipstreamimpl.h:86:5: note: in instantiation of member function 'zlib_stream::basic_zip_streambuf::flush' requested here 86 | flush(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/zipstreamimpl.h:620:35: note: in instantiation of member function 'zlib_stream::basic_zip_streambuf::~basic_zip_streambuf' requested here 620 | basic_zip_ostream::basic_zip_ostream(ostream_reference ostream, | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/obconversion.cpp:395:46: note: in instantiation of member function 'zlib_stream::basic_zip_ostream::basic_zip_ostream' requested here 395 | zlib_stream::zip_ostream *zOut = new zlib_stream::zip_ostream(*pOutput, true); | ^ 1 warning generated. 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-DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/ring.cpp.o -MF src/CMakeFiles/openbabel.dir/ring.cpp.o.d -o src/CMakeFiles/openbabel.dir/ring.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/ring.cpp [ 11% 54/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF src/CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o src/CMakeFiles/openbabel.dir/rotamer.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/rotamer.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/rotamer.cpp:232:32: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 232 | _vres.push_back(rotor->GetResolution()); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 1 warning generated. [ 11% 55/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/rotor.cpp.o -MF src/CMakeFiles/openbabel.dir/rotor.cpp.o.d -o src/CMakeFiles/openbabel.dir/rotor.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/rotor.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/rotor.cpp:114:14: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] 114 | if ((HasFixedAtoms() || HasFixedBonds()) && IsFixedBond(bond)) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/rotor.cpp:138:14: warning: 'SetNumCoords' is deprecated [-Wdeprecated-declarations] 138 | rotor->SetNumCoords(mol.NumAtoms()*3); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:452:5: note: 'SetNumCoords' has been explicitly marked deprecated here 452 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/rotor.cpp:318:65: warning: 'HasFixedAtoms' is deprecated: See HasFixedBonds() [-Wdeprecated-declarations] 318 | if (!((OBBond*)*k)->IsRotor(_ringRotors)||((HasFixedAtoms()||HasFixedBonds())&&IsFixedBond((OBBond*)*k))) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:643:5: note: 'HasFixedAtoms' has been explicitly marked deprecated here 643 | OB_DEPRECATED_MSG("See HasFixedBonds()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/rotor.cpp:336:16: warning: 'SetEvalAtoms' is deprecated [-Wdeprecated-declarations] 336 | rotor->SetEvalAtoms(eval); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:443:5: note: 'SetEvalAtoms' has been explicitly marked deprecated here 443 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/rotor.cpp:355:14: warning: 'SetDelta' is deprecated: Has no effect. [-Wdeprecated-declarations] 355 | rotor->SetDelta(delta); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:428:5: note: 'SetDelta' has been explicitly marked deprecated here 428 | OB_DEPRECATED_MSG("Has no effect.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 5 warnings generated. 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-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF src/CMakeFiles/openbabel.dir/typer.cpp.o.d -o src/CMakeFiles/openbabel.dir/typer.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/typer.cpp [ 12% 61/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/obmolecformat.cpp [ 13% 62/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF src/CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/conformersearch.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/conformersearch.cpp:411:54: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 411 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/conformersearch.cpp:477:58: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 477 | rotorKey[i] = generator.NextInt() % rotor->GetResolution().size(); // permutate gene | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/conformersearch.cpp:643:11: warning: 'IsNear' is deprecated: Use IsApprox() instead [-Wdeprecated-declarations] 643 | if (IsNear(last_score, score)) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:189:3: note: 'IsNear' has been explicitly marked deprecated here 189 | OB_DEPRECATED_MSG("Use IsApprox() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/conformersearch.cpp:795:54: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 795 | new_val = ((OBRandom*)d)->NextInt() % rotor->GetResolution().size(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/conformersearch.cpp:797:56: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 797 | new_val = ((OBRandom*)d)->NextInt() % rotor->GetResolution().size(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/conformersearch.cpp:904:56: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 904 | key1[i] = ((OBRandom*)d)->NextInt() % rotor->GetResolution().size(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/conformersearch.cpp:906:56: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 906 | key2[i] = ((OBRandom*)d)->NextInt() % rotor->GetResolution().size(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 7 warnings generated. [ 13% 63/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF src/CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o src/CMakeFiles/openbabel.dir/confsearch.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/confsearch.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/confsearch.cpp:134:59: warning: 'bind2nd, double>' is deprecated [-Wdeprecated-declarations] 134 | vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less(), (cutoff + 0.1) )), vec.end()); | ^ /usr/include/c++/v1/__functional/binder2nd.h:45:1: note: 'bind2nd, double>' has been explicitly marked deprecated here 45 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI binder2nd<_Operation> | ^ /usr/include/c++/v1/__config:992:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 992 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:977:49: note: expanded from macro '_LIBCPP_DEPRECATED' 977 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/confsearch.cpp:361:8: warning: 'SetFixAtoms' is deprecated: See SetFixedBonds() [-Wdeprecated-declarations] 361 | rl.SetFixAtoms(fixed); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:633:5: note: 'SetFixAtoms' has been explicitly marked deprecated here 633 | OB_DEPRECATED_MSG("See SetFixedBonds()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/confsearch.cpp:382:28: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 382 | size_t size = rotor->GetResolution().size(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/confsearch.cpp:446:70: warning: 'bind2nd, double>' is deprecated [-Wdeprecated-declarations] 446 | transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus(), energy_offset)); | ^ /usr/include/c++/v1/__functional/binder2nd.h:45:1: note: 'bind2nd, double>' has been explicitly marked deprecated here 45 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI binder2nd<_Operation> | ^ /usr/include/c++/v1/__config:992:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 992 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:977:49: note: expanded from macro '_LIBCPP_DEPRECATED' 977 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 4 warnings generated. [ 13% 64/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF src/CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o src/CMakeFiles/openbabel.dir/distgeom.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/distgeom.cpp [ 13% 65/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/dlhandler_unix.cpp [ 13% 66/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF src/CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/depict/depict.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/depict/depict.cpp:1237:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ~~~~~~~~~~~ ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/depict/depict.cpp:1236:24: note: array 'dashpattern' declared here 1236 | static const float dashpattern[] = {5., 5.}; | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/depict/depict.cpp:1237:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning 1237 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ^ 1 warning generated. [ 14% 67/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/depict/svgpainter.cpp [ 14% 68/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -MF src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o.d -o src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/math/matrix3x3.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/math/matrix3x3.cpp:273:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here 171 | OB_DEPRECATED_MSG("use the constant operator() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/math/matrix3x3.cpp:273:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here 171 | OB_DEPRECATED_MSG("use the constant operator() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/math/matrix3x3.cpp:273:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] 273 | vv.SetX(x()*m.Get(0,0) + y()*m.Get(0,1) + z()*m.Get(0,2)); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here 171 | OB_DEPRECATED_MSG("use the constant operator() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/math/matrix3x3.cpp:274:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here 171 | OB_DEPRECATED_MSG("use the constant operator() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/math/matrix3x3.cpp:274:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here 171 | OB_DEPRECATED_MSG("use the constant operator() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/math/matrix3x3.cpp:274:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] 274 | vv.SetY(x()*m.Get(1,0) + y()*m.Get(1,1) + z()*m.Get(1,2)); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here 171 | OB_DEPRECATED_MSG("use the constant operator() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/math/matrix3x3.cpp:275:19: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here 171 | OB_DEPRECATED_MSG("use the constant operator() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/math/matrix3x3.cpp:275:36: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here 171 | OB_DEPRECATED_MSG("use the constant operator() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/math/matrix3x3.cpp:275:53: warning: 'Get' is deprecated: use the constant operator() instead [-Wdeprecated-declarations] 275 | vv.SetZ(x()*m.Get(2,0) + y()*m.Get(2,1) + z()*m.Get(2,2)); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/matrix3x3.h:171:7: note: 'Get' has been explicitly marked deprecated here 171 | OB_DEPRECATED_MSG("use the constant operator() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 9 warnings generated. 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/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/descriptors/inchidescriptor.cpp In file included from /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/descriptors/inchidescriptor.cpp:24: /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] 148 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] 153 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/inchiformat.h:153:50: note: put the semicolon on 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-I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/fingerprints/fingerecfp.cpp [ 19% 94/476] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=src/CMakeFiles/plugin_fingerprints.dir/link.d -shared -o lib/plugin_fingerprints.so 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/usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefields/forcefieldgaff.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefields/forcefieldgaff.cpp:441:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 441 | if (IsNearZero(rab, 1.0e-3)) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ 1 warning generated. [ 20% 96/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefields/forcefieldghemical.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefields/forcefieldghemical.cpp:344:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 344 | if (IsNearZero(rab, 1.0e-3)) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ 1 warning generated. [ 20% 97/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefields/forcefieldmmff94.cpp [ 20% 98/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefields/forcefielduff.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefields/forcefielduff.cpp:269:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 269 | if (IsNearZero(dotAbbcBccd) || !isfinite(tor)) { // stop any NaN or infinity | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefields/forcefielduff.cpp:515:27: warning: 'VectorLengthDerivative' is deprecated [-Wdeprecated-declarations] 515 | rab = OBForceField::VectorLengthDerivative(da, db); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:1523:5: note: 'VectorLengthDerivative' has been explicitly marked deprecated here 1523 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefields/forcefielduff.cpp:519:9: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 519 | if (IsNearZero(rab, 1.0e-3)) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/forcefields/forcefielduff.cpp:1325:11: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 1325 | if (IsNearZero(torsioncalc.V)) // don't bother calcuating this torsion | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ 4 warnings generated. 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-D_THREAD_SAFE -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/ops/forcefield.cpp [ 23% 111/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -Dplugin_ops_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/ops/gen3d.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/ops/gen3d.cpp:169:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] 169 | pFF->UpdateCoordinates(molCopy); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/ops/gen3d.cpp:187:10: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] 187 | pFF->UpdateCoordinates(molCopy); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 2 warnings generated. 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-I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/mol2format.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/mol2format.cpp:371:14: warning: 'IsNearZero' is deprecated [-Wdeprecated-declarations] 371 | if (!IsNearZero(pcharge)) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/obutil.h:197:3: note: 'IsNearZero' has been explicitly marked deprecated here 197 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ 1 warning generated. 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38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 1 warning generated. 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-isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/dmolformat.cpp [ 34% 166/476] /usr/local/libexec/ccache/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -Dfchkformat_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/fchkformat.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/fchkformat.cpp:668:36: warning: 'bind2nd, int>' is deprecated [-Wdeprecated-declarations] 668 | bind2nd(less_equal(), 0)) || | ^ /usr/include/c++/v1/__functional/binder2nd.h:45:1: note: 'bind2nd, int>' has been explicitly marked deprecated here 45 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI binder2nd<_Operation> | ^ /usr/include/c++/v1/__config:992:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 992 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:977:49: note: expanded from macro '_LIBCPP_DEPRECATED' 977 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/fchkformat.cpp:671:36: warning: 'bind2nd, int>' is deprecated [-Wdeprecated-declarations] 671 | bind2nd(greater(), MxBond)) || | ^ /usr/include/c++/v1/__functional/binder2nd.h:45:1: note: 'bind2nd, int>' has been explicitly marked deprecated here 45 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI binder2nd<_Operation> | ^ /usr/include/c++/v1/__config:992:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 992 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:977:49: note: expanded from macro '_LIBCPP_DEPRECATED' 977 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/fchkformat.cpp:674:36: warning: 'bind2nd, int>' is deprecated [-Wdeprecated-declarations] 674 | bind2nd(less(), 0)) || | ^ /usr/include/c++/v1/__functional/binder2nd.h:45:1: note: 'bind2nd, int>' has been explicitly marked deprecated here 45 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI binder2nd<_Operation> | ^ /usr/include/c++/v1/__config:992:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 992 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:977:49: note: expanded from macro '_LIBCPP_DEPRECATED' 977 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/fchkformat.cpp:677:36: warning: 'bind2nd, int>' is deprecated [-Wdeprecated-declarations] 677 | bind2nd(greater(), Natoms))) | ^ /usr/include/c++/v1/__functional/binder2nd.h:45:1: note: 'bind2nd, int>' has been explicitly marked deprecated here 45 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI binder2nd<_Operation> | ^ /usr/include/c++/v1/__config:992:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 992 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:977:49: note: expanded from macro '_LIBCPP_DEPRECATED' 977 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 4 warnings generated. 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-DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -MF src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o.d -o src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/gausscubeformat.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/gausscubeformat.cpp:589:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] 589 | gd->GetOriginVector(origin); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 1 warning generated. 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-D_THREAD_SAFE -D__WXGTK__ -Dnwchemformat_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -MF src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o.d -o src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/nwchemformat.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/nwchemformat.cpp:321:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] 321 | quadrupole.Set(i[0], i[1], value); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/nwchemformat.cpp:322:24: warning: 'Set' is deprecated: use the non-constant operator() instead [-Wdeprecated-declarations] 322 | quadrupole.Set(i[1], i[0], value); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/math/matrix3x3.h:188:7: note: 'Set' has been explicitly marked deprecated here 188 | OB_DEPRECATED_MSG("use the non-constant operator() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] 310 | else if (vs[0][0] == '2') | ^ 3 warnings generated. 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_LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:977:49: note: expanded from macro '_LIBCPP_DEPRECATED' 977 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/vaspformat.cpp:591:29: warning: 'bind2nd, double>' is deprecated [-Wdeprecated-declarations] 591 | std::bind2nd(std::divides(), max / 100.0)); | ^ /usr/include/c++/v1/__functional/binder2nd.h:45:1: note: 'bind2nd, double>' has been explicitly marked deprecated here 45 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI binder2nd<_Operation> | ^ /usr/include/c++/v1/__config:992:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 992 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:977:49: note: expanded from macro '_LIBCPP_DEPRECATED' 977 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 2 warnings generated. 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/usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -MF src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o.d -o src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/chemkinformat.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] 911 | switch(pRD->ReactionType) | ^~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] 990 | switch(pRD->ReactionType) | ^~~~~~~~~~~~~~~~~ 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src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o -MF src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o.d -o src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/opendxformat.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/opendxformat.cpp:275:9: warning: 'GetOriginVector' is deprecated: Use GetOriginVector() instead [-Wdeprecated-declarations] 275 | gd->GetOriginVector(origin); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/griddata.h:88:5: note: 'GetOriginVector' has been explicitly marked deprecated here 88 | OB_DEPRECATED_MSG("Use GetOriginVector() instead") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 1 warning generated. 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-I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -I/usr/local/include/cairo -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/inchi -I/usr/local/include/libxml2 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -MF src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o.d -o src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/rinchiformat.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/formats/rinchiformat.cpp:147:40: warning: 'GetFirstAtom' is deprecated [-Wdeprecated-declarations] 147 | if (mol.NumAtoms() == 1 && mol.GetFirstAtom()->GetAtomicNum() == 0) { | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/mol.h:279:5: note: 'GetFirstAtom' has been explicitly marked deprecated here 279 | OB_DEPRECATED | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:37:29: note: expanded from macro 'OB_DEPRECATED' 37 | #define OB_DEPRECATED [[deprecated]] | ^ 1 warning generated. 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[-Wswitch] 158 | switch (chirality) { | ^~~~~~~~~ 1 warning generated. 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src/formats/CMakeFiles/chemicaljsonformat.dir/json/chemicaljsonformat.cpp.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so lib/libinchi.so.0.4.1 -lm lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so -lc -lm && : [ 91% 434/476] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=src/formats/CMakeFiles/pubchemjsonformat.dir/link.d -shared -o lib/pubchemjsonformat.so src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so lib/libinchi.so.0.4.1 -lm lib/libopenbabel.so.7.0.0 /usr/local/lib/libmaeparser.so /usr/local/lib/libcoordgen.so -lm -ldl -lz /usr/local/lib/libcairo.so -lc -lm && : [ 91% 435/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obabel.dir/obabel.cpp.o -MF tools/CMakeFiles/obabel.dir/obabel.cpp.o.d -o tools/CMakeFiles/obabel.dir/obabel.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obabel.cpp [ 91% 436/476] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/CMakeFiles/obabel.dir/link.d tools/CMakeFiles/obabel.dir/obabel.cpp.o -o bin/obabel -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: lib/libopenbabel.so.7.0.0 && : [ 91% 437/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obconformer.dir/obconformer.cpp.o -MF tools/CMakeFiles/obconformer.dir/obconformer.cpp.o.d -o tools/CMakeFiles/obconformer.dir/obconformer.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obconformer.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obconformer.cpp:90:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] 90 | pFF->UpdateCoordinates(mol); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obconformer.cpp:106:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] 106 | pFF->UpdateCoordinates(mol); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 2 warnings generated. [ 92% 438/476] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/CMakeFiles/obconformer.dir/link.d tools/CMakeFiles/obconformer.dir/obconformer.cpp.o -o bin/obconformer -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: lib/libopenbabel.so.7.0.0 && : [ 92% 439/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obenergy.dir/obenergy.cpp.o -MF tools/CMakeFiles/obenergy.dir/obenergy.cpp.o.d -o tools/CMakeFiles/obenergy.dir/obenergy.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obenergy.cpp [ 92% 440/476] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/CMakeFiles/obenergy.dir/link.d tools/CMakeFiles/obenergy.dir/obenergy.cpp.o -o bin/obenergy -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: 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/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obfit.cpp [ 92% 442/476] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/CMakeFiles/obfit.dir/link.d tools/CMakeFiles/obfit.dir/obfit.cpp.o -o bin/obfit -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: lib/libopenbabel.so.7.0.0 && : [ 93% 443/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obfitall.dir/obfitall.cpp.o -MF tools/CMakeFiles/obfitall.dir/obfitall.cpp.o.d -o tools/CMakeFiles/obfitall.dir/obfitall.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obfitall.cpp [ 93% 444/476] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/CMakeFiles/obfitall.dir/link.d tools/CMakeFiles/obfitall.dir/obfitall.cpp.o -o bin/obfitall -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: lib/libopenbabel.so.7.0.0 && : [ 93% 445/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obgen.dir/obgen.cpp.o -MF tools/CMakeFiles/obgen.dir/obgen.cpp.o.d -o tools/CMakeFiles/obgen.dir/obgen.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obgen.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obgen.cpp:138:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] 138 | pFF->UpdateCoordinates(mol); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 1 warning generated. [ 93% 446/476] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/CMakeFiles/obgen.dir/link.d tools/CMakeFiles/obgen.dir/obgen.cpp.o -o bin/obgen -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: lib/libopenbabel.so.7.0.0 && : [ 93% 447/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obminimize.dir/obminimize.cpp.o -MF tools/CMakeFiles/obminimize.dir/obminimize.cpp.o.d -o tools/CMakeFiles/obminimize.dir/obminimize.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obminimize.cpp [ 94% 448/476] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/CMakeFiles/obminimize.dir/link.d tools/CMakeFiles/obminimize.dir/obminimize.cpp.o -o bin/obminimize -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: lib/libopenbabel.so.7.0.0 && : [ 94% 449/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obmm.dir/obmm.cpp.o -MF tools/CMakeFiles/obmm.dir/obmm.cpp.o.d -o tools/CMakeFiles/obmm.dir/obmm.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obmm.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obmm.cpp:274:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] 274 | pFF->UpdateCoordinates(mol); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obmm.cpp:280:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] 280 | pFF->UpdateCoordinates(mol); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obmm.cpp:402:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] 402 | pFF->UpdateCoordinates(mol); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obmm.cpp:415:12: warning: 'UpdateCoordinates' is deprecated: Use GetCooordinates instead. [-Wdeprecated-declarations] 415 | pFF->UpdateCoordinates(mol); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/forcefield.h:713:5: note: 'UpdateCoordinates' has been explicitly marked deprecated here 713 | OB_DEPRECATED_MSG("Use GetCooordinates instead.") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 4 warnings generated. [ 94% 450/476] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/CMakeFiles/obmm.dir/link.d tools/CMakeFiles/obmm.dir/obmm.cpp.o -o bin/obmm -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: lib/libopenbabel.so.7.0.0 && : [ 94% 451/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obprobe.dir/obprobe.cpp.o -MF tools/CMakeFiles/obprobe.dir/obprobe.cpp.o.d -o tools/CMakeFiles/obprobe.dir/obprobe.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obprobe.cpp [ 94% 452/476] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/CMakeFiles/obprobe.dir/link.d tools/CMakeFiles/obprobe.dir/obprobe.cpp.o -o bin/obprobe -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: lib/libopenbabel.so.7.0.0 && : [ 95% 453/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obprop.dir/obprop.cpp.o -MF tools/CMakeFiles/obprop.dir/obprop.cpp.o.d -o tools/CMakeFiles/obprop.dir/obprop.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obprop.cpp [ 95% 454/476] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/CMakeFiles/obprop.dir/link.d tools/CMakeFiles/obprop.dir/obprop.cpp.o -o bin/obprop -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/openbabel/work/.build/lib: lib/libopenbabel.so.7.0.0 && : [ 95% 455/476] /usr/local/libexec/ccache/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RAPIDJSON -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_THREAD_SAFE -D__WXGTK__ -I/usr/local/include -I/wrkdirs/usr/ports/science/openbabel/work/.build/include -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/data -I/wrkdirs/usr/ports/science/openbabel/work/.build/data -I/wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include -I/usr/local/include/eigen3 -isystem /usr/local/lib/wx/include/gtk3-unicode-3.0 -isystem /usr/local/include/wx-3.0 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o -MF tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o.d -o tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obrotamer.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/tools/obrotamer.cpp:99:47: warning: 'GetResolution' is deprecated: See GetTorsionValues() [-Wdeprecated-declarations] 99 | rotorKey[i] = rand.NextInt() % rotor->GetResolution().size(); | ^ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/include/openbabel/rotor.h:449:5: note: 'GetResolution' has been explicitly marked deprecated here 449 | OB_DEPRECATED_MSG("See GetTorsionValues()") | ^ /wrkdirs/usr/ports/science/openbabel/work/.build/include/openbabel/babelconfig.h:38:38: note: expanded from macro 'OB_DEPRECATED_MSG' 38 | #define OB_DEPRECATED_MSG(msg) [[deprecated(msg)]] | ^ 1 warning generated. 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src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o -MF src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o.d -o src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o -c /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/GUI/optswx.cpp /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/GUI/optswx.cpp:223:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 223 | if(pdef=strcasestr(pCaption,"default")) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/GUI/optswx.cpp:223:16: note: place parentheses around the assignment to silence this warning 223 | if(pdef=strcasestr(pCaption,"default")) | ^ | ( ) /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/GUI/optswx.cpp:223:16: note: use '==' to turn this assignment into an equality comparison 223 | if(pdef=strcasestr(pCaption,"default")) | ^ | == /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/GUI/optswx.cpp:293:60: warning: expression result unused [-Wunused-value] 293 | strcasecmp(pdef,"no") && !strcasecmp(pdef,"not") && strcasecmp(pdef,"none"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/GUI/optswx.cpp:394:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] 394 | register unsigned char *h, *n, *hc, *nc; | ^~~~~~~~ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/GUI/optswx.cpp:394:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] 394 | register unsigned char *h, *n, *hc, *nc; | ^~~~~~~~ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/GUI/optswx.cpp:394:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] 394 | register unsigned char *h, *n, *hc, *nc; | ^~~~~~~~ /wrkdirs/usr/ports/science/openbabel/work/openbabel-3-1-1-178-g2b211d6ac/src/GUI/optswx.cpp:394:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] 394 | register unsigned char *h, *n, *hc, *nc; | ^~~~~~~~ 6 warnings generated. 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"/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/gulpformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/hinformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/hinformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/jaguarformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/jaguarformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/molproformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/molproformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/mopacformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/mopacformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/nwchemformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/nwchemformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pwscfformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pwscfformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/qchemformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/qchemformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/siestaformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/siestaformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/turbomoleformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/turbomoleformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/vaspformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/vaspformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/xsfformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/xsfformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/zindoformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/zindoformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/maeformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/maeformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/gamessukformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/gamessukformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/orcaformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/orcaformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/APIInterface.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/APIInterface.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/CSRformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/CSRformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/PQSformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/PQSformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/MCDLformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/MCDLformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/alchemyformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/alchemyformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/acrformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/acrformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/amberformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/amberformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/balstformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/balstformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/bgfformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/bgfformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/boxformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/boxformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cacaoformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cacaoformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cacheformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cacheformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/carformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/carformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cccformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cccformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chem3dformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chem3dformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chemdrawcdx.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chemdrawcdx.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chemdrawct.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chemdrawct.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chemkinformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chemkinformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chemtoolformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chemtoolformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cifformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cifformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cofformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cofformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/crkformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/crkformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cssrformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cssrformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/dlpolyformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/dlpolyformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/exyzformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/exyzformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/fastsearchformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/fastsearchformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/fastaformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/fastaformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/featformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/featformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/fhformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/fhformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/fingerprintformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/fingerprintformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/fpsformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/fpsformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/freefracformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/freefracformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/ghemicalformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/ghemicalformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/gromos96format.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/gromos96format.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/groformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/groformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/lmpdatformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/lmpdatformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/lpmdformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/lpmdformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/mdffformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/mdffformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/mmcifformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/mmcifformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/mmodformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/mmodformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/moldenformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/moldenformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/mpdformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/mpdformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/mpqcformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/mpqcformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/msiformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/msiformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/msmsformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/msmsformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/opendxformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/opendxformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/outformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/outformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pcmodelformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pcmodelformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pdbqtformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pdbqtformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pointcloudformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pointcloudformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/posformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/posformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pqrformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pqrformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/rinchiformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/rinchiformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/rsmiformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/rsmiformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/rxnformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/rxnformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/shelxformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/shelxformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/smileyformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/smileyformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/stlformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/stlformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/thermoformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/thermoformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/tinkerformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/tinkerformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/unichemformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/unichemformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/viewmolformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/viewmolformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/wlnformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/wlnformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/xedformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/xedformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/xyzformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/xyzformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/yasaraformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/yasaraformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/png2format.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/png2format.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cdxmlformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cdxmlformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cmlformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cmlformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cmlreactformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/cmlreactformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pubchem.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pubchem.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/xmlformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/xmlformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chemdoodlejsonformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chemdoodlejsonformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chemicaljsonformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/chemicaljsonformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pubchemjsonformat.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/openbabel/3.1.1/pubchemjsonformat.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/libinchi.so.0.4.1 -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/libinchi.so.0 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/libinchi.so.0.4.1" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/lib/libinchi.so -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obabel -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obabel" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obconformer -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obconformer" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obenergy -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obenergy" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obfit -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obfit" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obfitall -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obfitall" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obgen -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obgen" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obminimize -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obminimize" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obmm -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obmm" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obprobe -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obprobe" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obprop -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obprop" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obrotamer -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obrotamer" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obrotate -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obrotate" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obsym -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obsym" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obtautomer -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obtautomer" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obthermo -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obthermo" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obdistgen -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obdistgen" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obgrep -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obgrep" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obspectrophore -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obspectrophore" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obrms -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obrms" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obgui -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/openbabel/work/stage/usr/local/bin/obgui" to "/usr/local/lib" ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-01T06:32:55+0000' 'PKG_NOTE_ports_top_git_hash=5529c5919b' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=fa53920e72' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for openbabel-3.1.1.178_3 ===> Building openbabel-3.1.1.178_3 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for openbabel-3.1.1.178_3 build of science/openbabel | openbabel-3.1.1.178_3 ended at Thu May 1 07:48:56 BST 2025 build time: 00:16:02