=>> Building biology/ncbi-toolkit build started at Wed May 7 00:01:19 BST 2025 port directory: /usr/ports/biology/ncbi-toolkit package name: ncbi-toolkit-2017.01.06_9 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2813 Dec 29 14:16 /usr/ports/biology/ncbi-toolkit/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: 1a35b19e6d Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 01 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for ncbi-toolkit-2017.01.06_9: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-toolkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- MOTIFLIB="-L/usr/local/lib -lXm" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-toolkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-DLIBICONV_PLUG" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -DLIBICONV_PLUG " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/ncbi-toolkit" EXAMPLESDIR="share/examples/ncbi-toolkit" DATADIR="share/ncbi-toolkit" WWWDIR="www/ncbi-toolkit" ETCDIR="etc/ncbi-toolkit" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-toolkit DOCSDIR=/usr/local/share/doc/ncbi-toolkit EXAMPLESDIR=/usr/local/share/examples/ncbi-toolkit WWWDIR=/usr/local/www/ncbi-toolkit ETCDIR=/usr/local/etc/ncbi-toolkit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-toolkit-2017.01.06_9 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ncbi-toolkit-2017.01.06_9 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ncbi-toolkit-2017.01.06_9 for building => SHA256 Checksum OK for ncbi-toolkit-2017.01.06/ncbi.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ncbi-toolkit-2017.01.06_9 for building ===> Extracting for ncbi-toolkit-2017.01.06_9 => SHA256 Checksum OK for ncbi-toolkit-2017.01.06/ncbi.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for ncbi-toolkit-2017.01.06_9 ===> Applying FreeBSD patches for ncbi-toolkit-2017.01.06_9 from /usr/ports/biology/ncbi-toolkit/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-toolkit-2017.01.06_9 depends on package: gettext-runtime>=0.22_1 - not found ===> Installing existing package /packages/All/gettext-runtime-0.23.1.pkg [pkg-builder.dan.net.uk] Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] Extracting gettext-runtime-0.23.1: .......... done ===> ncbi-toolkit-2017.01.06_9 depends on package: gettext-runtime>=0.22_1 - found ===> Returning to build of ncbi-toolkit-2017.01.06_9 ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found ===> Installing existing package /packages/All/libX11-1.8.12,1.pkg [pkg-builder.dan.net.uk] Installing libX11-1.8.12,1... [pkg-builder.dan.net.uk] `-- Installing libxcb-1.17.0... [pkg-builder.dan.net.uk] | `-- Installing libXau-1.0.11... [pkg-builder.dan.net.uk] | `-- Extracting libXau-1.0.11: .......... done [pkg-builder.dan.net.uk] | `-- Installing libXdmcp-1.1.5... [pkg-builder.dan.net.uk] | | `-- Installing xorgproto-2024.1... [pkg-builder.dan.net.uk] | | `-- Extracting xorgproto-2024.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libXdmcp-1.1.5: ...... done [pkg-builder.dan.net.uk] `-- Extracting libxcb-1.17.0: .......... done [pkg-builder.dan.net.uk] Extracting libX11-1.8.12,1: .......... done ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> Returning to build of ncbi-toolkit-2017.01.06_9 ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xau.pc - found ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xext.pc - not found ===> Installing existing package /packages/All/libXext-1.3.6,1.pkg [pkg-builder.dan.net.uk] Installing libXext-1.3.6,1... [pkg-builder.dan.net.uk] Extracting libXext-1.3.6,1: .......... done ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> Returning to build of ncbi-toolkit-2017.01.06_9 ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xft.pc - not found ===> Installing existing package /packages/All/libXft-2.3.8.pkg [pkg-builder.dan.net.uk] Installing libXft-2.3.8... [pkg-builder.dan.net.uk] `-- Installing fontconfig-2.15.0_3,1... [pkg-builder.dan.net.uk] | `-- Installing expat-2.7.1... [pkg-builder.dan.net.uk] | `-- Extracting expat-2.7.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing freetype2-2.13.3... [pkg-builder.dan.net.uk] | `-- Extracting freetype2-2.13.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting fontconfig-2.15.0_3,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXrender-0.9.12... [pkg-builder.dan.net.uk] `-- Extracting libXrender-0.9.12: ....... done [pkg-builder.dan.net.uk] Extracting libXft-2.3.8: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ===== Message from freetype2-2.13.3: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xft.pc - found ===> Returning to build of ncbi-toolkit-2017.01.06_9 ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - not found ===> Installing existing package /packages/All/libXmu-1.1.4,1.pkg [pkg-builder.dan.net.uk] Installing libXmu-1.1.4,1... [pkg-builder.dan.net.uk] `-- Installing libXt-1.3.0,1... [pkg-builder.dan.net.uk] | `-- Installing libICE-1.1.1,1... [pkg-builder.dan.net.uk] | `-- Extracting libICE-1.1.1,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libSM-1.2.6,1... [pkg-builder.dan.net.uk] | `-- Extracting libSM-1.2.6,1: ........ done [pkg-builder.dan.net.uk] `-- Extracting libXt-1.3.0,1: .......... done [pkg-builder.dan.net.uk] Extracting libXmu-1.1.4,1: .......... done ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found ===> Returning to build of ncbi-toolkit-2017.01.06_9 ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xrender.pc - found ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - not found ===> Installing existing package /packages/All/libXpm-3.5.17_1.pkg [pkg-builder.dan.net.uk] Installing libXpm-3.5.17_1... [pkg-builder.dan.net.uk] Extracting libXpm-3.5.17_1: .......... done ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - found ===> Returning to build of ncbi-toolkit-2017.01.06_9 ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/bin/ccache - found ===> Returning to build of ncbi-toolkit-2017.01.06_9 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libfontconfig.so - found (/usr/local/lib/libfontconfig.so) ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libgmp.so - not found ===> Installing existing package /packages/All/gmp-6.3.0.pkg [pkg-builder.dan.net.uk] Installing gmp-6.3.0... [pkg-builder.dan.net.uk] Extracting gmp-6.3.0: .......... done ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libgmp.so - found (/usr/local/lib/libgmp.so) ===> Returning to build of ncbi-toolkit-2017.01.06_9 ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libgnutls.so - not found ===> Installing existing package /packages/All/gnutls-3.8.9.pkg [pkg-builder.dan.net.uk] Installing gnutls-3.8.9... [pkg-builder.dan.net.uk] `-- Installing libidn2-2.3.8... [pkg-builder.dan.net.uk] | `-- Installing libunistring-1.3... [pkg-builder.dan.net.uk] | `-- Extracting libunistring-1.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting libidn2-2.3.8: .......... done [pkg-builder.dan.net.uk] `-- Installing libtasn1-4.20.0_1... [pkg-builder.dan.net.uk] `-- Extracting libtasn1-4.20.0_1: .......... done [pkg-builder.dan.net.uk] `-- Installing nettle-3.10.1... [pkg-builder.dan.net.uk] | `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] | `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting nettle-3.10.1: .......... done [pkg-builder.dan.net.uk] `-- Installing p11-kit-0.25.5... [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.8... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.8: .......... done [pkg-builder.dan.net.uk] `-- Extracting p11-kit-0.25.5: .......... done [pkg-builder.dan.net.uk] `-- Installing unbound-1.23.0... [pkg-builder.dan.net.uk] | `-- Installing libnghttp2-1.65.0... [pkg-builder.dan.net.uk] | `-- Extracting libnghttp2-1.65.0: ....... done ===> Creating groups Using existing group 'unbound' ===> Creating users Using existing user 'unbound' [pkg-builder.dan.net.uk] `-- Extracting unbound-1.23.0: .......... done [pkg-builder.dan.net.uk] Extracting gnutls-3.8.9: .......... done ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libgnutls.so - found (/usr/local/lib/libgnutls.so) ===> Returning to build of ncbi-toolkit-2017.01.06_9 ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libhogweed.so - found (/usr/local/lib/libhogweed.so) ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libidn2.so - found (/usr/local/lib/libidn2.so) ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libnettle.so - found (/usr/local/lib/libnettle.so) ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libp11-kit.so - found (/usr/local/lib/libp11-kit.so) ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libpng.so - not found ===> Installing existing package /packages/All/png-1.6.47.pkg [pkg-builder.dan.net.uk] Installing png-1.6.47... [pkg-builder.dan.net.uk] Extracting png-1.6.47: .......... done ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> Returning to build of ncbi-toolkit-2017.01.06_9 ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libtasn1.so - found (/usr/local/lib/libtasn1.so) ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libtspi.so - not found ===> Installing existing package /packages/All/trousers-0.3.14_5.pkg [pkg-builder.dan.net.uk] Installing trousers-0.3.14_5... [pkg-builder.dan.net.uk] `-- Installing tpm-emulator-0.7.4_3... ===> Creating groups Creating group '_tss' with gid '601' ===> Creating users Creating user '_tss' with uid '601' [pkg-builder.dan.net.uk] `-- Extracting tpm-emulator-0.7.4_3: ......... done ===> Creating groups Using existing group '_tss' ===> Creating users Using existing user '_tss' [pkg-builder.dan.net.uk] Extracting trousers-0.3.14_5: .......... done ===== Message from trousers-0.3.14_5: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libtspi.so - found (/usr/local/lib/libtspi.so) ===> Returning to build of ncbi-toolkit-2017.01.06_9 ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libunistring.so - found (/usr/local/lib/libunistring.so) ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libjpeg.so - not found ===> Installing existing package /packages/All/jpeg-turbo-3.1.0.pkg [pkg-builder.dan.net.uk] Installing jpeg-turbo-3.1.0... [pkg-builder.dan.net.uk] Extracting jpeg-turbo-3.1.0: .......... done ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so) ===> Returning to build of ncbi-toolkit-2017.01.06_9 ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libXm.so.4 - not found ===> Installing existing package /packages/All/open-motif-2.3.8_8.pkg [pkg-builder.dan.net.uk] Installing open-motif-2.3.8_8... [pkg-builder.dan.net.uk] `-- Installing libXaw-1.0.16,2... [pkg-builder.dan.net.uk] `-- Extracting libXaw-1.0.16,2: .......... done [pkg-builder.dan.net.uk] `-- Installing xbitmaps-1.1.2... [pkg-builder.dan.net.uk] `-- Extracting xbitmaps-1.1.2: .......... done [pkg-builder.dan.net.uk] Extracting open-motif-2.3.8_8: .......... done ===> ncbi-toolkit-2017.01.06_9 depends on shared library: libXm.so.4 - found (/usr/local/lib/libXm.so.4) ===> Returning to build of ncbi-toolkit-2017.01.06_9 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for ncbi-toolkit-2017.01.06_9 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for ncbi-toolkit-2017.01.06_9 Motif found at /usr/local/include/Xm platform is freebsd FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 pkg-config: Command not found. libgnutls-config: Command not found. Disabling assert(). make GNUTLS_INCLUDE="" GNUTLS_LIBS="" CFLAGS1="-DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c " LDFLAGS1="-O" OTHERLIBS="-lm" SHELL="/bin/sh" LCL="fbd" RAN="ranlib" AR="ar" CC="cc" LIB30=libncbicn3d.a LIB28=libvibgif.a LIB4=libvibrant.a LIB20=libncbidesk.a LIB45=libddvlib.a VIBFLAG="-I/usr/local/include -L/usr/local/lib -DWIN_MOTIF" VIBLIBS="-L/usr/local/lib -lXm -lXpm -lXft -lfontconfig -lXrender -ljpeg -lpng -lz -lXmu -lXau -lXt -lX11 -lXext" all chmod -R ug+rw,o+r . ../include ./ln-if-absent ../corelib/tsprintf.h ../include ./ln-if-absent ../corelib/gifgen.h ../include ./ln-if-absent ../corelib/ncbi*.h ../include ./ln-if-absent ../corelib/tree*.h ../include ./ln-if-absent ../corelib/regex.h ../include ./ln-if-absent ../corelib/matrix.h ../include ./ln-if-absent ../corelib/binary.h ../include ./ln-if-absent ../corelib/morefile/*.h ../include ./ln-if-absent ../corelib/morefile/*.c . ./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include ./ln-if-absent ../corelib/ncbilcl.fbd ../include/ncbilcl.h ./ln-if-absent ../corelib/*.c . ./ln-if-absent ../corelib/core*.h . ./ln-if-absent ../asnlib/*.h . rm -f ../include/asn.h mv asn.h ../include ./ln-if-absent ../asnlib/*.c . ./ln-if-absent ../connect/*.c . ./ln-if-absent ../connect/ncbi_ansi_ext.h . ./ln-if-absent ../connect/ncbi_assert.h . ./ln-if-absent ../connect/ncbi_priv.h . ./ln-if-absent ../connect/ncbi_comm.h . ./ln-if-absent ../connect/ncbi_config.h . ./ln-if-absent ../connect/ncbi_connssl.h . ./ln-if-absent ../connect/ncbi_lbos.h . ./ln-if-absent ../connect/ncbi_lbosp.h . ./ln-if-absent ../connect/parson.h . ./ln-if-absent ../connect/ncbi_lbsm.h . *** Error code 1 (ignored) ./ln-if-absent ../connect/ncbi_lbsm_ipc.h . *** Error code 1 (ignored) ./ln-if-absent ../connect/ncbi_host_infop.h . ./ln-if-absent ../connect/ncbi_server_infop.h . ./ln-if-absent ../connect/ncbi_servicep.h . ./ln-if-absent ../connect/ncbi_socketp.h . ./ln-if-absent ../connect/ncbi_dispd.h . ./ln-if-absent ../connect/ncbi_lbsmd.h . ./ln-if-absent ../connect/ncbi_local.h . ./ln-if-absent ../connect/ncbi_lb.h . ./ln-if-absent ../connect/ncbi_version.h . ./ln-if-absent ../connect/ncbi_base64.h . ./ln-if-absent ../connect/urlquery.h ../include mkdir ../include/connect chmod ug+rw,o+r ../include/connect cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect ./ln-if-absent ../util/tables/*.c . mkdir -p ../include/util/tables cp -fp ../util/tables/*.h ../include/util/tables ./ln-if-absent ../util/creaders/*.c . mkdir -p ../include/util/creaders cp -fp ../util/creaders/*.h ../include/util/creaders ./ln-if-absent ../ctools/*.c . ./ln-if-absent ../ctools/*.h . mkdir ../include/ctools chmod ug+rw,o+r ../include/ctools cp -fp ../ctools/*.h ../include/ctools ./ln-if-absent ../object/*.c . ./ln-if-absent ../object/*.h ../include ./ln-if-absent ../access/*.c . ./ln-if-absent ../access/*.h ../include ./ln-if-absent ../asnstat/*.h ../include ./ln-if-absent ../api/*.h ../include ./ln-if-absent ../api/*.c . ./ln-if-absent ../api/*.inc . ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../cdromlib/*.c . ./ln-if-absent ../vibrant/*.h ../include ./ln-if-absent ../vibrant/*.c . ./ln-if-absent ../desktop/*.h ../include ./ln-if-absent ../desktop/*.c . ./ln-if-absent ../biostruc/*.h ../include ./ln-if-absent ../biostruc/*.c . ./ln-if-absent ../biostruc/cdd/*.h ../include ./ln-if-absent ../biostruc/cdd/*.c . ./ln-if-absent ../biostruc/cn3d/*.h ../include ./ln-if-absent ../biostruc/cn3d/*.c . ./ln-if-absent ../tools/*.h ../include ./ln-if-absent ../tools/*.c . ./ln-if-absent ../cn3d/*.h ../include ./ln-if-absent ../cn3d/*.c . ./ln-if-absent ../gif/*.c . ./ln-if-absent ../gif/*.h ../include ./ln-if-absent ../ddv/*.h ../include ./ln-if-absent ../ddv/*.c . ./ln-if-absent ../regexp/*.c . ./ln-if-absent ../regexp/*.h ../include ./ln-if-absent ../internal/compr/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/compr/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/libindx/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/libindx/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/libpars/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/libpars/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ideogram/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ideogram/*.dat . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ideogram/ideochr*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ideogram/ideoorgs.h . *** Error code 1 (ignored) ./ln-if-absent ../internal/ccap/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ccap/*.dat . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ccap/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ncbidraw.c ncbidrwg.c ./ln-if-absent ncbithr.c ncbithrs.c ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id2arch/*.h ../include mkdir -p ../include/algo/blast/core ./ln-if-absent ../algo/blast/core/*.c . ./ln-if-absent ../algo/blast/core/*.h . ./ln-if-absent ../algo/blast/core/*.inl . cp -fp ../algo/blast/core/*.h ../include/algo/blast/core mkdir -p ../include/algo/blast/composition_adjustment ./ln-if-absent ../algo/blast/composition_adjustment/*.c . ./ln-if-absent ../algo/blast/composition_adjustment/*.h ../include cp -fp ../algo/blast/composition_adjustment/*.h ../include/algo/blast/composition_adjustment mkdir -p ../include/algo/blast/api ./ln-if-absent ../algo/blast/api/*.c . cp -fp ../algo/blast/api/*.h ../include/algo/blast/api chmod -R ug+rw,o+r . cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbithr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cp -p ncbithr.o ../lib cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbimain.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] ncbimain.c:81:1: warning: type specifier missing, defaults to 'int'; ISO C99 and later do not support implicit int [-Wimplicit-int] 81 | main(int argc, char *argv[]) | ^ | int 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbibs.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF wwwutils.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbierr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] ncbierr.c:955:31: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] 955 | strncat(path,file,sizeof(path)); | ^~~~~~~~~~~~ ncbierr.c:955:31: note: change the argument to be the free space in the destination buffer minus the terminating null byte 955 | strncat(path,file,sizeof(path)); | ^~~~~~~~~~~~ | sizeof(path) - strlen(path) - 1 ncbierr.c:1380:13: warning: comparison of array 'info->logfile' not equal to a null pointer is always true [-Wtautological-pointer-compare] 1380 | if (info->logfile != NULL && *info->logfile == '\0') | ~~~~~~^~~~~~~ ~~~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbienv.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbifile.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbiprop.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbimath.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbimem.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbimisc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] ncbimisc.c:2250:27: warning: 'memset' call operates on objects of type 'struct md5context_' while the size is based on a different type 'Nlm_MD5ContextPtr' (aka 'struct md5context_ *') [-Wsizeof-pointer-memaccess] 2250 | memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */ | ~~~ ^~~ ncbimisc.c:2250:27: note: did you mean to dereference the argument to 'sizeof' (and multiply it by the number of elements)? 2250 | memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */ | ^~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbimsg.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbistr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbisgml.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbitime.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbilang.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnbufo.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asndebin.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnenbin.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asngen.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnio.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnlex.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnlext.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnout.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asnprint.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] asnprint.c:102:7: warning: expression result unused [-Wunused-value] 102 | for (currmod; currmod != NULL; currmod = currmod->next) | ^~~~~~~ asnprint.c:2575:8: warning: cast to smaller integer type 'Nlm_Uint4' (aka 'unsigned int') from 'AsnTypePtr' (aka 'struct asntype *') [-Wpointer-to-int-cast] 2575 | ptr = (Uint4)(atp); | ^~~~~~~~~~~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asntypes.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asngenob.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gifgen.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF togif.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNCBI_NOTHREADS_AVAIL -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbithrs.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] regex.c:3762:31: warning: cast to smaller integer type 'int' from 'const char *' [-Wpointer-to-int-cast] 3762 | if ((int) old_regend[r] >= (int) regstart[r]) | ^~~~~~~~~~~~~~~~~~~ regex.c:3762:54: warning: cast to smaller integer type 'int' from 'const char *' [-Wpointer-to-int-cast] 3762 | if ((int) old_regend[r] >= (int) regstart[r]) | ^~~~~~~~~~~~~~~~~ regex.c:3768:19: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast] 3768 | PUSH_FAILURE_POINT (p1 + mcnt, d, -2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2421:5: note: expanded from macro 'PUSH_FAILURE_POINT' 2421 | PUSH_FAILURE_ITEM (lowest_active_reg); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2342:42: note: expanded from macro 'PUSH_FAILURE_ITEM' 2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^~~~~~~~~~~~~~~~~~~~~~~ regex.c:3768:19: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast] 3768 | PUSH_FAILURE_POINT (p1 + mcnt, d, -2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2424:5: note: expanded from macro 'PUSH_FAILURE_POINT' 2424 | PUSH_FAILURE_ITEM (highest_active_reg); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2342:42: note: expanded from macro 'PUSH_FAILURE_ITEM' 2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^~~~~~~~~~~~~~~~~~~~~~~ regex.c:3915:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast] 3915 | PUSH_FAILURE_POINT (p + mcnt, NULL, -2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2421:5: note: expanded from macro 'PUSH_FAILURE_POINT' 2421 | PUSH_FAILURE_ITEM (lowest_active_reg); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2342:42: note: expanded from macro 'PUSH_FAILURE_ITEM' 2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^~~~~~~~~~~~~~~~~~~~~~~ regex.c:3915:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast] 3915 | PUSH_FAILURE_POINT (p + mcnt, NULL, -2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2424:5: note: expanded from macro 'PUSH_FAILURE_POINT' 2424 | PUSH_FAILURE_ITEM (highest_active_reg); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2342:42: note: expanded from macro 'PUSH_FAILURE_ITEM' 2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^~~~~~~~~~~~~~~~~~~~~~~ regex.c:3968:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast] 3968 | PUSH_FAILURE_POINT (p + mcnt, d, -2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2421:5: note: expanded from macro 'PUSH_FAILURE_POINT' 2421 | PUSH_FAILURE_ITEM (lowest_active_reg); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2342:42: note: expanded from macro 'PUSH_FAILURE_ITEM' 2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^~~~~~~~~~~~~~~~~~~~~~~ regex.c:3968:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast] 3968 | PUSH_FAILURE_POINT (p + mcnt, d, -2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2424:5: note: expanded from macro 'PUSH_FAILURE_POINT' 2424 | PUSH_FAILURE_ITEM (highest_active_reg); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2342:42: note: expanded from macro 'PUSH_FAILURE_ITEM' 2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^~~~~~~~~~~~~~~~~~~~~~~ regex.c:4074:13: warning: cast to smaller integer type 'unsigned int' from 'fail_stack_elt_t' (aka 'const unsigned char *') [-Wpointer-to-int-cast] 4074 | POP_FAILURE_POINT (sdummy, pdummy, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4075 | dummy_low_reg, dummy_high_reg, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4076 | reg_dummy, reg_dummy, reg_info_dummy); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2509:14: note: expanded from macro 'POP_FAILURE_POINT' 2509 | high_reg = (unsigned) POP_FAILURE_ITEM (); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:4074:13: warning: cast to smaller integer type 'unsigned int' from 'fail_stack_elt_t' (aka 'const unsigned char *') [-Wpointer-to-int-cast] 4074 | POP_FAILURE_POINT (sdummy, pdummy, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4075 | dummy_low_reg, dummy_high_reg, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4076 | reg_dummy, reg_dummy, reg_info_dummy); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2512:13: note: expanded from macro 'POP_FAILURE_POINT' 2512 | low_reg = (unsigned) POP_FAILURE_ITEM (); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:4107:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast] 4107 | PUSH_FAILURE_POINT (0, 0, -2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2421:5: note: expanded from macro 'PUSH_FAILURE_POINT' 2421 | PUSH_FAILURE_ITEM (lowest_active_reg); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2342:42: note: expanded from macro 'PUSH_FAILURE_ITEM' 2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^~~~~~~~~~~~~~~~~~~~~~~ regex.c:4107:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast] 4107 | PUSH_FAILURE_POINT (0, 0, -2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2424:5: note: expanded from macro 'PUSH_FAILURE_POINT' 2424 | PUSH_FAILURE_ITEM (highest_active_reg); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2342:42: note: expanded from macro 'PUSH_FAILURE_ITEM' 2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^~~~~~~~~~~~~~~~~~~~~~~ regex.c:4120:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast] 4120 | PUSH_FAILURE_POINT (0, 0, -2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2421:5: note: expanded from macro 'PUSH_FAILURE_POINT' 2421 | PUSH_FAILURE_ITEM (lowest_active_reg); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2342:42: note: expanded from macro 'PUSH_FAILURE_ITEM' 2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^~~~~~~~~~~~~~~~~~~~~~~ regex.c:4120:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast] 4120 | PUSH_FAILURE_POINT (0, 0, -2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2424:5: note: expanded from macro 'PUSH_FAILURE_POINT' 2424 | PUSH_FAILURE_ITEM (highest_active_reg); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2342:42: note: expanded from macro 'PUSH_FAILURE_ITEM' 2342 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item | ^~~~~~~~~~~~~~~~~~~~~~~ regex.c:4288:11: warning: cast to smaller integer type 'unsigned int' from 'fail_stack_elt_t' (aka 'const unsigned char *') [-Wpointer-to-int-cast] 4288 | POP_FAILURE_POINT (d, p, | ^~~~~~~~~~~~~~~~~~~~~~~~ 4289 | lowest_active_reg, highest_active_reg, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4290 | regstart, regend, reg_info); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2509:14: note: expanded from macro 'POP_FAILURE_POINT' 2509 | high_reg = (unsigned) POP_FAILURE_ITEM (); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:4288:11: warning: cast to smaller integer type 'unsigned int' from 'fail_stack_elt_t' (aka 'const unsigned char *') [-Wpointer-to-int-cast] 4288 | POP_FAILURE_POINT (d, p, | ^~~~~~~~~~~~~~~~~~~~~~~~ 4289 | lowest_active_reg, highest_active_reg, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4290 | regstart, regend, reg_info); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ regex.c:2512:13: note: expanded from macro 'POP_FAILURE_POINT' 2512 | low_reg = (unsigned) POP_FAILURE_ITEM (); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tsprintf.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbiargs.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tree.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF matrix.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_socket.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] ncbi_socket.c:440:50: warning: passing 'TSOCK_socklen_t *' (aka 'int *') to parameter of type 'socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] 440 | if (getsockname(fd, (struct sockaddr*) &sin, &sinlen) == 0 | ^~~~~~~ /usr/include/sys/socket.h:704:74: note: passing argument to parameter here 704 | int getsockname(int, struct sockaddr * __restrict, socklen_t * __restrict); | ^ ncbi_socket.c:2572:73: warning: passing 'TSOCK_socklen_t *' (aka 'int *') to parameter of type 'socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] 2572 | if (getsockopt(sock->sock, SOL_SOCKET, SO_ERROR, (void*) error, &len) | ^~~~ /usr/include/sys/socket.h:705:72: note: passing argument to parameter here 705 | int getsockopt(int, int, int, void * __restrict, socklen_t * __restrict); | ^ ncbi_socket.c:4435:35: warning: passing 'TSOCK_socklen_t *' (aka 'int *') to parameter of type 'socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] 4435 | if (getpeername(fd, &peer.sa, &peerlen) != 0) { | ^~~~~~~~ /usr/include/sys/socket.h:703:74: note: passing argument to parameter here 703 | int getpeername(int, struct sockaddr * __restrict, socklen_t * __restrict); | ^ ncbi_socket.c:4471:43: warning: passing 'TSOCK_socklen_t *' (aka 'int *') to parameter of type 'socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] 4471 | if (getsockname(fd, &peer.sa, &peerlen) != 0) | ^~~~~~~~ /usr/include/sys/socket.h:704:74: note: passing argument to parameter here 704 | int getsockname(int, struct sockaddr * __restrict, socklen_t * __restrict); | ^ ncbi_socket.c:4865:48: warning: passing 'TSOCK_socklen_t *' (aka 'int *') to parameter of type 'socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] 4865 | error = getsockname(x_lsock, &addr.sa, &addrlen) != 0 | ^~~~~~~~ /usr/include/sys/socket.h:704:74: note: passing argument to parameter here 704 | int getsockname(int, struct sockaddr * __restrict, socklen_t * __restrict); | ^ ncbi_socket.c:5105:49: warning: passing 'TSOCK_socklen_t *' (aka 'int *') to parameter of type 'socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] 5105 | if ((x_sock = accept(lsock->sock, &addr.sa, &addrlen)) == SOCK_INVALID) { | ^~~~~~~~ /usr/include/sys/socket.h:695:69: note: passing argument to parameter here 695 | int accept(int, struct sockaddr * __restrict, socklen_t * __restrict); | ^ ncbi_socket.c:5409:52: warning: passing 'TSOCK_socklen_t *' (aka 'int *') to parameter of type 'socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] 5409 | (struct sockaddr*) &sin, &sinlen); | ^~~~~~~ /usr/include/sys/socket.h:708:96: note: passing argument to parameter here 708 | ssize_t recvfrom(int, void *, size_t, int, struct sockaddr * __restrict, socklen_t * __restrict); | ^ ncbi_socket.c:7390:51: warning: passing 'TSOCK_socklen_t *' (aka 'int *') to parameter of type 'socklen_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] 7390 | error = getsockname(sock->sock, &addr.sa, &addrlen) != 0 | ^~~~~~~~ /usr/include/sys/socket.h:704:74: note: passing argument to parameter here 704 | int getsockname(int, struct sockaddr * __restrict, socklen_t * __restrict); | ^ 8 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_buffer.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_types.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_core.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_core_c.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_util.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_priv.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_ansi_ext.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_connection.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_connector.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_connutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_file_connector.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_heapmgr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_http_connector.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_memory_connector.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_lbsmd_stub.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_host_info.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_server_info.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_service.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_version.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_service_connector.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_ftp_connector.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_dispd.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_lb.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_local.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_socket_connector.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urlquery.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF binary.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_sendmail.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_base64.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn_connection.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_lbos.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF parson.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_ipv6.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF raw_scoremat.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF drwnflpt.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF drwnfspc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF drwnmfls.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libncbi.a ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o ncbi_lbos.o parson.o ncbi_ipv6.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o cp -p libncbi.a ../lib ranlib ../lib/libncbi.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_gnutls.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libconnssl.a ar cru libconnssl.a ncbi_gnutls.o cp -p libconnssl.a ../lib ranlib ../lib/libconnssl.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objacces.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objalign.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objall.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objbibli.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objfeat.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] objfeat.c:5957:28: warning: self-comparison always evaluates to false [-Wtautological-compare] 5957 | || onp2->mgcode != onp2->mgcode | ^ objfeat.c:11393:1: warning: '/*' within block comment [-Wcomment] 11393 | /************************************************** | ^ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objgen.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objloc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmedli.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objpub.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objres.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objscoremat.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objseq.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] objseq.c:1473:20: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqDataPtr' (aka 'struct SeqData *') [-Wnon-literal-null-conversion] 1473 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ objseq.c:1477:16: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqDataPtr' (aka 'struct SeqData *') [-Wnon-literal-null-conversion] 1477 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objblock.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objcode.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] objcode.c:48:51: warning: '/*' within block comment [-Wcomment] 48 | * environment variables to allow reading from data/*.val, replaced tabs in source code with spaces | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objsset.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objsub.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objprt.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objfdef.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objalignloc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objtable.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objpubme.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmdrs.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objproj.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objgbseq.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objtseq.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objinsdseq.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmacro.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objent2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ent2api.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pmfapi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] pmfapi.c:612:33: warning: adding 'int' to a string does not append to the string [-Wstring-plus-int] 612 | sprintf (tmp, "%s%lld", "," + !i, (long long) uids [i]); | ~~~~^~~~ pmfapi.c:612:33: note: use array indexing to silence this warning 612 | sprintf (tmp, "%s%lld", "," + !i, (long long) uids [i]); | ^ | & [ ] pmfapi.c:662:33: warning: adding 'int' to a string does not append to the string [-Wstring-plus-int] 662 | sprintf (tmp, "%s%lld", "," + !i, (long long) uids [i]); | ~~~~^~~~ pmfapi.c:662:33: note: use array indexing to silence this warning 662 | sprintf (tmp, "%s%lld", "," + !i, (long long) uids [i]); | ^ | & [ ] 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objtax3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tax3api.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objegkludge.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objentgene.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmla2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mla2api.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF qblastapi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vecscnapi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmim.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objvalid.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mimapi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cddapi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqport.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] seqport.c:5054:37: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_ByteStorePtr' (aka 'struct bytestore *') [-Wnon-literal-null-conversion] 5054 | ByteStorePtr bysp1, bysp2 = '\0'; | ^~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sequtil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prtutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] prtutil.c:1270:36: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 1270 | for (wrd = str, space = 0; (*wrd == ' '); wrd++) | ~~~~~^~~~~~ prtutil.c:1270:36: note: remove extraneous parentheses around the comparison to silence this warning 1270 | for (wrd = str, space = 0; (*wrd == ' '); wrd++) | ~ ^ ~ prtutil.c:1270:36: note: use '=' to turn this equality comparison into an assignment 1270 | for (wrd = str, space = 0; (*wrd == ' '); wrd++) | ^~ | = 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF simple.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] In file included from simple.c:69: ../include/all.h:7293:9: warning: 'RNA_QUAL' macro redefined [-Wmacro-redefined] 7293 | #define RNA_QUAL &at[2254] | ^ ../include/all.h:5823:9: note: previous definition is here 5823 | #define RNA_QUAL &at[1025] | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tofasta.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tofile.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tomedlin.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF valid.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] valid.c:2212:25: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 2212 | sprintf (buf, "%d", ufp->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~ | %ld valid.c:8596:78: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] 8596 | if (!(vsp->bsp_partial_val & SLP_START) || (vsp->bsp_partial_val && SLP_STOP)) | ^ ~~~~~~~~ valid.c:8596:78: note: use '&' for a bitwise operation 8596 | if (!(vsp->bsp_partial_val & SLP_START) || (vsp->bsp_partial_val && SLP_STOP)) | ^~ | & valid.c:8596:78: note: remove constant to silence this warning 8596 | if (!(vsp->bsp_partial_val & SLP_START) || (vsp->bsp_partial_val && SLP_STOP)) | ^~~~~~~~~~~ valid.c:32156:26: warning: self-comparison always evaluates to false [-Wtautological-compare] 32156 | } else if (gip2->right < gip2->right) { | ^ 3 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF valapi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] valapi.c:292:25: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 292 | sprintf (buf, "%d", ufp->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~ | %ld 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF alignmgr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] alignmgr.c:1607:19: warning: cast to 'Nlm_VoidPtr' (aka 'void *') from smaller integer type 'Nlm_Boolean' (aka 'unsigned char') [-Wint-to-void-pointer-cast] 1607 | sap->saip = (Pointer)AMAlignIndexFree(amaip); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr.c:2288:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqAlignPtr' (aka 'struct seqalign *') [-Wnon-literal-null-conversion] 2288 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ alignmgr.c:2291:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqAlignPtr' (aka 'struct seqalign *') [-Wnon-literal-null-conversion] 2291 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ alignmgr.c:2294:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqAlignPtr' (aka 'struct seqalign *') [-Wnon-literal-null-conversion] 2294 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ alignmgr.c:6308:17: warning: expression which evaluates to zero treated as a null pointer constant of type 'AMmsmsPtr' (aka 'struct am_msms *') [-Wnon-literal-null-conversion] 6308 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 5 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF aliparse.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] aliparse.c:2533:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'AlignFileDataPtr' (aka 'AlignFileData *') [-Wnon-literal-null-conversion] 2533 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ aliparse.c:3161:15: warning: expression result unused [-Wunused-value] 3161 | for (d; dright < gip2->right) { | ^ 7 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sqnutil3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] sqnutil3.c:13713:28: warning: self-comparison always evaluates to false [-Wtautological-compare] 13713 | || onp2->mgcode != onp2->mgcode | ^ sqnutil3.c:26956:26: warning: comparison of address of 'vnp2' not equal to a null pointer is always true [-Wtautological-pointer-compare] 26956 | if (vnp1 != NULL &&& vnp2 != NULL) { | ^~~~ ~~~~ sqnutil3.c:33201:35: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 33201 | sprintf (cip->description, fmt); | ^~~ sqnutil3.c:33201:35: note: treat the string as an argument to avoid this 33201 | sprintf (cip->description, fmt); | ^ | "%s", sqnutil3.c:34051:38: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 34051 | if (StringHasNoText (name)) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 4 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sqnutil4.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] sqnutil4.c:7308:53: warning: expression which evaluates to zero treated as a null pointer constant of type 'DeflineFeatureRequestListPtr' (aka 'struct deflinefeaturerequestlist *') [-Wnon-literal-null-conversion] 7308 | expected_product_name = GetProductName (cds, bsp, FALSE); | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sqnutil4.c:10750:37: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 10750 | if (new_fcp == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sqnutil4.c:10752:33: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 10752 | if (vnp == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sqnutil4.c:27751:27: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 27751 | if (sdp == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sqnutil4.c:27753:27: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 27753 | if (pdp == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sqnutil4.c:28869:17: warning: result of comparison of constant 256 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare] 28869 | while (*val <= 256 && *val >= -1 && isspace (*val)) { | ~~~~ ^ ~~~ sqnutil4.c:28931:34: warning: result of comparison of constant 256 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare] 28931 | while (last > val && *last <= 256 && *last >= -1 && isspace (*last)) { | ~~~~~ ^ ~~~ 7 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF subutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] subutil.c:774:41: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion] 774 | if (delta_seq_entry == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ subutil.c:775:48: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion] 775 | if (IS_Bioseq_set(delta_seq_entry)) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ subutil.c:776:56: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion] 776 | if (delta_seq_entry->data.ptrvalue == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ subutil.c:782:16: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion] 782 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ subutil.c:3639:32: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 3639 | if (AA_for_tRNA != '\0') | ^~~~ | (void *)0 subutil.c:4050:16: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqGraphPtr' (aka 'struct seqgraph *') [-Wnon-literal-null-conversion] 4050 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 6 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF edutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] edutil.c:2062:48: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion] 2062 | if ((oldbsp == NULL) || (from < 0)) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ edutil.c:2203:50: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion] 2203 | if ((sourceid == NULL) || (from < 0)) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff1.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] asn2ff2.c:1358:8: warning: type specifier missing, defaults to 'int'; ISO C99 and later do not support implicit int [-Wimplicit-int] 1358 | static ChoicePID(SeqIdPtr sid) | ~~~~~~ ^ | int 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] asn2ff3.c:2717:28: warning: format specifies type 'char *' but the argument has type 'Nlm_VoidPtr' (aka 'void *') [-Wformat] 2717 | sprintf(val, "GeneID:%s", vnp->data.ptrvalue); | ~~ ^~~~~~~~~~~~~~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff4.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] asn2ff4.c:1126:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] 1126 | }else{ | ^ asn2ff4.c:1347:8: warning: type specifier missing, defaults to 'int'; ISO C99 and later do not support implicit int [-Wimplicit-int] 1347 | static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2) | ~~~~~~ ^ | int asn2ff4.c:2069:26: warning: comparison of array 'gbp->accession' equal to a null pointer is always false [-Wtautological-pointer-compare] 2069 | if (gbp == NULL || gbp->accession == NULL) | ~~~~~^~~~~~~~~ ~~~~ asn2ff4.c:2660:12: warning: address of array 'gbp->locus' will always evaluate to 'true' [-Wpointer-bool-conversion] 2660 | if (gbp->locus) { | ~~ ~~~~~^~~~~ asn2ff4.c:2664:12: warning: address of array 'gbp->accession' will always evaluate to 'true' [-Wpointer-bool-conversion] 2664 | if (gbp->accession) { | ~~ ~~~~~^~~~~~~~~ 5 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff5.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] asn2ff5.c:1683:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] 1683 | else | ^ asn2ff5.c:2128:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion] 2128 | temp = '\0'; | ^~~~ asn2ff5.c:2124:12: warning: expression result unused [-Wunused-value] 2124 | temp++; *ptr_in++; | ^~~~~~~~~ 3 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2ff6.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb1.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] asn2gnb2.c:1742:18: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 1742 | while (accp != '\0' && prevp != '\0') { | ^~~~ | (void *)0 asn2gnb2.c:1742:37: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 1742 | while (accp != '\0' && prevp != '\0') { | ^~~~ | (void *)0 asn2gnb2.c:1767:41: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 1767 | for (ptr = acc, letters = 0; ptr != '\0' && IS_ALPHA(*ptr); ++ptr, ++letters) continue; | ^~~~ | (void *)0 asn2gnb2.c:3409:14: warning: call to undeclared function 'PrintDate'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration] 3409 | string = PrintDate (spb->created); | ^ asn2gnb2.c:3409:12: warning: incompatible integer to pointer conversion assigning to 'Nlm_CharPtr' (aka 'char *') from 'int' [-Wint-conversion] 3409 | string = PrintDate (spb->created); | ^ ~~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:3417:14: warning: call to undeclared function 'PrintDate'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration] 3417 | string = PrintDate (spb->sequpd); | ^ asn2gnb2.c:3417:12: warning: incompatible integer to pointer conversion assigning to 'Nlm_CharPtr' (aka 'char *') from 'int' [-Wint-conversion] 3417 | string = PrintDate (spb->sequpd); | ^ ~~~~~~~~~~~~~~~~~~~~~~~ asn2gnb2.c:3424:14: warning: call to undeclared function 'PrintDate'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration] 3424 | string = PrintDate (spb->annotupd); | ^ asn2gnb2.c:3424:12: warning: incompatible integer to pointer conversion assigning to 'Nlm_CharPtr' (aka 'char *') from 'int' [-Wint-conversion] 3424 | string = PrintDate (spb->annotupd); | ^ ~~~~~~~~~~~~~~~~~~~~~~~~~ 9 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb4.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb5.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gnb6.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ftusrstr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gbfeat.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gbftglob.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gbparint.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] gbparint.c:2138:22: warning: add explicit braces to avoid dangling else [-Wdangling-else] 2138 | }else{ | ^ gbparint.c:2524:22: warning: add explicit braces to avoid dangling else [-Wdangling-else] 2524 | }else{ | ^ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF utilpars.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF utilpub.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ffprint.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF wprint.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF satutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqmgr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] seqmgr.c:373:29: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqEntryPtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 373 | if (smp == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ seqmgr.c:3752:28: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqEntryPtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 3752 | if (omdp == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ seqmgr.c:5594:90: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion] 5594 | slp = SeqLocCopyRegion (sip, loc, bsp, 0, bsp->length - 1, Seq_strand_minus, FALSE); | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 3 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmgr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] objmgr.c:938:19: warning: result of comparison of constant 4294967295 with expression of type 'Nlm_Uint2' (aka 'unsigned short') is always true [-Wtautological-constant-out-of-range-compare] 938 | if (omp->hold < OBJMGR_MAX) | ~~~~~~~~~ ^ ~~~~~~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gather.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF accmmdbs.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF acccn3ds.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF lsqfetch.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF findrepl.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] findrepl.c:1846:16: warning: taking the absolute value of unsigned type 'size_t' (aka 'unsigned long') has no effect [-Wabsolute-value] 1846 | new_len += abs (StringLen (GetSpecialCharacterReplacement ((unsigned char)*cp)) - 1); | ^ findrepl.c:1846:16: note: remove the call to 'abs' since unsigned values cannot be negative 1846 | new_len += abs (StringLen (GetSpecialCharacterReplacement ((unsigned char)*cp)) - 1); | ^~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF codon.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF jzcoll.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] jzcoll.c:1748:11: warning: comparison of array 'csop->features' equal to a null pointer is always false [-Wtautological-pointer-compare] 1748 | if(csop->features == NULL && afp->all_feature == FALSE) | ~~~~~~^~~~~~~~ ~~~~ jzcoll.c:2631:24: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 2631 | sprintf(buf, "%d", gilist->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~~~~ | %ld 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF jzmisc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF maputil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] maputil.c:868:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 868 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mconsist.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF macroapi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] macroapi.c:5936:51: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion] 5936 | if (str == NULL || text_portion == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ macroapi.c:6719:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion] 6719 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ macroapi.c:7726:41: warning: passing 'Nlm_Uint1[4]' (aka 'unsigned char[4]') to parameter of type 'Nlm_CharPtr' (aka 'char *') converts between pointers to integer types where one is of the unique plain 'char' type and the other is not [-Wpointer-sign] 7726 | wobble_list = ExpandWobbleCodon(codon); | ^~~~~ macroapi.c:7636:46: note: passing argument to parameter 'codon' here 7636 | static ValNodePtr ExpandWobbleCodon (CharPtr codon) | ^ macroapi.c:8681:27: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 8681 | sprintf (buf, "%d", vnp->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~ | %ld macroapi.c:12881:31: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 12881 | sprintf (buf, "%d", ufp->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~ | %ld macroapi.c:12916:31: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 12916 | sprintf (buf, "%d", ufp->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~ | %ld macroapi.c:12957:31: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 12957 | sprintf (buf, "%d", ufp->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~ | %ld macroapi.c:15043:29: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 15043 | sprintf (str, "%d", the_pub->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~~~~~ | %ld macroapi.c:16170:77: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 16170 | if (data == NULL || field == NULL || field->data.ptrvalue == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ macroapi.c:29871:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 29871 | while (sdp = SeqDescAsnRead (aip, NULL)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:29871:16: note: place parentheses around the assignment to silence this warning 29871 | while (sdp = SeqDescAsnRead (aip, NULL)) { | ^ | ( ) macroapi.c:29871:16: note: use '==' to turn this assignment into an equality comparison 29871 | while (sdp = SeqDescAsnRead (aip, NULL)) { | ^ | == macroapi.c:31907:61: warning: data argument not used by format string [-Wformat-extra-args] 31907 | fprintf (log_fp, "Instantiated protein titles\n", num); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ macroapi.c:32020:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 32020 | while (sdp = SeqDescAsnRead (aip, NULL)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ macroapi.c:32020:16: note: place parentheses around the assignment to silence this warning 32020 | while (sdp = SeqDescAsnRead (aip, NULL)) { | ^ | ( ) macroapi.c:32020:16: note: use '==' to turn this assignment into an equality comparison 32020 | while (sdp = SeqDescAsnRead (aip, NULL)) { | ^ | == macroapi.c:35192:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 35192 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ macroapi.c:35198:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 35198 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ macroapi.c:37987:25: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 37987 | sprintf (buf, "%d", vnp->data.intvalue + 1); | ~~ ^~~~~~~~~~~~~~~~~~~~~~ | %ld 15 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salpedit.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salpstat.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] salpstat.c:1945:17: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 1945 | if((bsp1->mol == Seq_mol_aa)) | ~~~~~~~~~~^~~~~~~~~~~~~ salpstat.c:1945:17: note: remove extraneous parentheses around the comparison to silence this warning 1945 | if((bsp1->mol == Seq_mol_aa)) | ~ ^ ~ salpstat.c:1945:17: note: use '=' to turn this equality comparison into an assignment 1945 | if((bsp1->mol == Seq_mol_aa)) | ^~ | = salpstat.c:1949:17: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 1949 | if((bsp2->mol == Seq_mol_aa)) | ~~~~~~~~~~^~~~~~~~~~~~~ salpstat.c:1949:17: note: remove extraneous parentheses around the comparison to silence this warning 1949 | if((bsp2->mol == Seq_mol_aa)) | ~ ^ ~ salpstat.c:1949:17: note: use '=' to turn this equality comparison into an assignment 1949 | if((bsp2->mol == Seq_mol_aa)) | ^~ | = 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salpacc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salprop.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] salprop.c:867:52: warning: address of array 'sesp->label' will always evaluate to 'true' [-Wpointer-bool-conversion] 867 | if (af.protName==NULL && sesp->label) | ~~ ~~~~~~^~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salsap.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salstruc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] salstruc.c:734:21: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 734 | if (strptmp == '\0') break; | ^~~~ | (void *)0 salstruc.c:1999:12: warning: comparison of array 'csop->features' equal to a null pointer is always false [-Wtautological-pointer-compare] 1999 | if(csop->features == NULL) | ~~~~~~^~~~~~~~ ~~~~ salstruc.c:2101:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 2101 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ salstruc.c:2103:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 2103 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 4 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] salutil.c:2513:12: warning: add explicit braces to avoid dangling else [-Wdangling-else] 2513 | else if (!with_prot && feat->data == NULL) | ^ salutil.c:3647:8: warning: call to undeclared function 'AlnMgr2IndexSingleChildSeqAlign'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration] 3647 | AlnMgr2IndexSingleChildSeqAlign(salp); /* make sure it's dense-seg */ | ^ salutil.c:3656:5: warning: call to undeclared function 'AlnMgr2IndexSingleChildSeqAlign'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration] 3656 | AlnMgr2IndexSingleChildSeqAlign(salp); | ^ 3 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF udvseq.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blocks.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] blocks.c:1375:32: warning: expression which evaluates to zero treated as a null pointer constant of type 'SegmentPtr' (aka 'struct _segment *') [-Wnon-literal-null-conversion] 1375 | minus_head1 = minus_head2 = FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pgppop.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF samutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] samutil.c:1556:13: warning: multiple unsequenced modifications to 'Index' [-Wunsequenced] 1556 | Index = ++Index % DDE_STACK_SIZE; | ~ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvcolor.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF viewmgr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvcreate.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] ddvcreate.c:493:22: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 493 | while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp)) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvcreate.c:493:22: note: place parentheses around the assignment to silence this warning 493 | while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp)) | ^ | ( ) ddvcreate.c:493:22: note: use '==' to turn this assignment into an equality comparison 493 | while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp)) | ^ | == ddvcreate.c:779:22: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 779 | while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp)) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddvcreate.c:779:22: note: place parentheses around the assignment to silence this warning 779 | while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp)) | ^ | ( ) ddvcreate.c:779:22: note: use '==' to turn this assignment into an equality comparison 779 | while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp)) | ^ | == 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF jsavlt.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF needleman.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF txalign.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] txalign.c:1254:183: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 1254 | snprintf(checkboxBuf, 200, "", sip->data.intvalue, query_number_glb); | ~~ ^~~~~~~~~~~~~~~~~~ | %ld txalign.c:2230:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 2230 | if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:2230:21: note: place parentheses around the assignment to silence this warning 2230 | if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) { | ^ | ( ) txalign.c:2230:21: note: use '==' to turn this assignment into an equality comparison 2230 | if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) { | ^ | == txalign.c:4498:37: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 4498 | if (bsp = BioseqLockById(bestid)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ txalign.c:4498:37: note: place parentheses around the assignment to silence this warning 4498 | if (bsp = BioseqLockById(bestid)) { | ^ | ( ) txalign.c:4498:37: note: use '==' to turn this assignment into an equality comparison 4498 | if (bsp = BioseqLockById(bestid)) { | ^ | == 3 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF fdlobj.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF alignmgr2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] alignmgr2.c:885:18: warning: expression result unused [-Wunused-value] 885 | for (j; jnumseg && next == -1; j++) | ^ alignmgr2.c:2984:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 2984 | if (ldelta = ABS(s->beg - beg)) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~ alignmgr2.c:2984:18: note: place parentheses around the assignment to silence this warning 2984 | if (ldelta = ABS(s->beg - beg)) { | ^ | ( ) alignmgr2.c:2984:18: note: use '==' to turn this assignment into an equality comparison 2984 | if (ldelta = ABS(s->beg - beg)) { | ^ | == alignmgr2.c:3221:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 3221 | while (a = AlnMgr2GetNextSeqPiece(a)) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:3221:12: note: place parentheses around the assignment to silence this warning 3221 | while (a = AlnMgr2GetNextSeqPiece(a)) { | ^ | ( ) alignmgr2.c:3221:12: note: use '==' to turn this assignment into an equality comparison 3221 | while (a = AlnMgr2GetNextSeqPiece(a)) { | ^ | == alignmgr2.c:3223:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 3223 | while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:3223:14: note: place parentheses around the assignment to silence this warning 3223 | while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) { | ^ | ( ) alignmgr2.c:3223:14: note: use '==' to turn this assignment into an equality comparison 3223 | while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) { | ^ | == alignmgr2.c:3233:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 3233 | while (A = AlnMgr2GetNextSeqPiece(A)) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:3233:12: note: place parentheses around the assignment to silence this warning 3233 | while (A = AlnMgr2GetNextSeqPiece(A)) { | ^ | ( ) alignmgr2.c:3233:12: note: use '==' to turn this assignment into an equality comparison 3233 | while (A = AlnMgr2GetNextSeqPiece(A)) { | ^ | == alignmgr2.c:3237:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 3237 | while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {}; | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:3237:16: note: place parentheses around the assignment to silence this warning 3237 | while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {}; | ^ | ( ) alignmgr2.c:3237:16: note: use '==' to turn this assignment into an equality comparison 3237 | while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {}; | ^ | == alignmgr2.c:5623:22: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 5623 | while (more = AlnMgr2GetNextAlnBit(sap, amp)) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignmgr2.c:5623:22: note: place parentheses around the assignment to silence this warning 5623 | while (more = AlnMgr2GetNextAlnBit(sap, amp)) | ^ | ( ) alignmgr2.c:5623:22: note: use '==' to turn this assignment into an equality comparison 5623 | while (more = AlnMgr2GetNextAlnBit(sap, amp)) | ^ | == alignmgr2.c:6174:17: warning: expression which evaluates to zero treated as a null pointer constant of type 'AMInterrInfoPtr' (aka 'struct am_interrinfo *') [-Wnon-literal-null-conversion] 6174 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ alignmgr2.c:6331:12: warning: expression result unused [-Wunused-value] 6331 | for (i; isegnum; i++) | ^ 9 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF alnread.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF acerdapi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF aceread.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libncbiobj.a ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o cp -p libncbiobj.a ../lib ranlib ../lib/libncbiobj.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cdentrez.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cdromlib.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cdnewlib.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cdnewlib.c:1342:12: warning: cast to 'AsnIo *' (aka 'struct asnio *') from smaller integer type 'int' [-Wint-to-pointer-cast] 1342 | return (AsnIo*) CatastrophicFailure(1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdnewlib.c:1937:10: warning: cast to 'long *' from smaller integer type 'int' [-Wint-to-pointer-cast] 1937 | return (long*)CatastrophicFailure(1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdnewlib.c:1945:10: warning: cast to 'long *' from smaller integer type 'int' [-Wint-to-pointer-cast] 1945 | return (long*)CatastrophicFailure(1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cdnewlib.c:2117:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_Byte *' (aka 'unsigned char *') [-Wnon-literal-null-conversion] 2117 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ cdnewlib.c:2679:48: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] 2679 | strncat(volname,cddev->volume->volume_name,sizeof volname); | ^~~~~~~~~~~~~~ cdnewlib.c:2679:48: note: change the argument to be the free space in the destination buffer minus the terminating null byte 2679 | strncat(volname,cddev->volume->volume_name,sizeof volname); | ^~~~~~~~~~~~~~ | sizeof(volname) - strlen(volname) - 1 cdnewlib.c:2751:33: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] 2751 | strncat(fpath,cddev->inf.root,sizeof fpath); | ^~~~~~~~~~~~ cdnewlib.c:2751:33: note: change the argument to be the free space in the destination buffer minus the terminating null byte 2751 | strncat(fpath,cddev->inf.root,sizeof fpath); | ^~~~~~~~~~~~ | sizeof(fpath) - strlen(fpath) - 1 cdnewlib.c:2769:36: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] 2769 | strncat(fpath,cddev->inf.root,sizeof fpath); | ^~~~~~~~~~~~ cdnewlib.c:2769:36: note: change the argument to be the free space in the destination buffer minus the terminating null byte 2769 | strncat(fpath,cddev->inf.root,sizeof fpath); | ^~~~~~~~~~~~ | sizeof(fpath) - strlen(fpath) - 1 7 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF casn.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cdconfig.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objentr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libncbicdr.a ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o cp -p libncbicdr.a ../lib ranlib ../lib/libncbicdr.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibbutns.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibextra.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibfiles.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibforms.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibgroup.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF viblists.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibmenus.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibprmpt.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibsbars.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibslate.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] vibslate.c:1515:47: warning: missing sentinel in function call [-Wsentinel] 1515 | XtVaGetValues (h, XmNbackground, &color, 0); | ^ | , NULL /usr/local/include/X11/Intrinsic.h:1626:13: note: function has been explicitly marked sentinel here 1626 | extern void XtVaGetValues( | ^ 1627 | Widget /* widget */, 1628 | ... 1629 | ) _X_SENTINEL(0); | ~~~~~~~~~~~~~~ vibslate.c:1517:47: warning: missing sentinel in function call [-Wsentinel] 1517 | XtVaGetValues (h, XmNforeground, &color, 0); | ^ | , NULL /usr/local/include/X11/Intrinsic.h:1626:13: note: function has been explicitly marked sentinel here 1626 | extern void XtVaGetValues( | ^ 1627 | Widget /* widget */, 1628 | ... 1629 | ) _X_SENTINEL(0); | ~~~~~~~~~~~~~~ vibslate.c:1544:45: warning: missing sentinel in function call [-Wsentinel] 1544 | XtVaGetValues (h, XmNbackground, &color, 0); | ^ | , NULL /usr/local/include/X11/Intrinsic.h:1626:13: note: function has been explicitly marked sentinel here 1626 | extern void XtVaGetValues( | ^ 1627 | Widget /* widget */, 1628 | ... 1629 | ) _X_SENTINEL(0); | ~~~~~~~~~~~~~~ vibslate.c:1546:45: warning: missing sentinel in function call [-Wsentinel] 1546 | XtVaGetValues (h, XmNforeground, &color, 0); | ^ | , NULL /usr/local/include/X11/Intrinsic.h:1626:13: note: function has been explicitly marked sentinel here 1626 | extern void XtVaGetValues( | ^ 1627 | Widget /* widget */, 1628 | ... 1629 | ) _X_SENTINEL(0); | ~~~~~~~~~~~~~~ vibslate.c:2157:45: warning: missing sentinel in function call [-Wsentinel] 2157 | XtVaGetValues (w, XmNbackground, &color, 0); | ^ | , NULL /usr/local/include/X11/Intrinsic.h:1626:13: note: function has been explicitly marked sentinel here 1626 | extern void XtVaGetValues( | ^ 1627 | Widget /* widget */, 1628 | ... 1629 | ) _X_SENTINEL(0); | ~~~~~~~~~~~~~~ vibslate.c:2159:45: warning: missing sentinel in function call [-Wsentinel] 2159 | XtVaGetValues (w, XmNforeground, &color, 0); | ^ | , NULL /usr/local/include/X11/Intrinsic.h:1626:13: note: function has been explicitly marked sentinel here 1626 | extern void XtVaGetValues( | ^ 1627 | Widget /* widget */, 1628 | ... 1629 | ) _X_SENTINEL(0); | ~~~~~~~~~~~~~~ vibslate.c:2313:48: warning: missing sentinel in function call [-Wsentinel] 2313 | XtVaGetValues(w, XmNbackground, &color, 0); | ^ | , NULL /usr/local/include/X11/Intrinsic.h:1626:13: note: function has been explicitly marked sentinel here 1626 | extern void XtVaGetValues( | ^ 1627 | Widget /* widget */, 1628 | ... 1629 | ) _X_SENTINEL(0); | ~~~~~~~~~~~~~~ vibslate.c:2315:48: warning: missing sentinel in function call [-Wsentinel] 2315 | XtVaGetValues(w, XmNforeground, &color, 0); | ^ | , NULL /usr/local/include/X11/Intrinsic.h:1626:13: note: function has been explicitly marked sentinel here 1626 | extern void XtVaGetValues( | ^ 1627 | Widget /* widget */, 1628 | ... 1629 | ) _X_SENTINEL(0); | ~~~~~~~~~~~~~~ vibslate.c:2359:45: warning: missing sentinel in function call [-Wsentinel] 2359 | XtVaGetValues (w, XmNbackground, &color, 0); | ^ | , NULL /usr/local/include/X11/Intrinsic.h:1626:13: note: function has been explicitly marked sentinel here 1626 | extern void XtVaGetValues( | ^ 1627 | Widget /* widget */, 1628 | ... 1629 | ) _X_SENTINEL(0); | ~~~~~~~~~~~~~~ vibslate.c:2361:45: warning: missing sentinel in function call [-Wsentinel] 2361 | XtVaGetValues (w, XmNforeground, &color, 0); | ^ | , NULL /usr/local/include/X11/Intrinsic.h:1626:13: note: function has been explicitly marked sentinel here 1626 | extern void XtVaGetValues( | ^ 1627 | Widget /* widget */, 1628 | ... 1629 | ) _X_SENTINEL(0); | ~~~~~~~~~~~~~~ 10 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibtexts.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibutils.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] vibutils.c:776:13: warning: cast to smaller integer type 'Nlm_Int4' (aka 'int') from 'void *' [-Wvoid-pointer-to-int-cast] 776 | percent = (Nlm_Int4)Nlm_GetAppProperty( "VibrantMessageWidthMax" ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibwndws.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibmain.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] vibmain.c:106:1: warning: type specifier missing, defaults to 'int'; ISO C99 and later do not support implicit int [-Wimplicit-int] 106 | main (int argc, char *argv[]) | ^ | int 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbidraw.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF drawing.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mapping.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF picture.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF viewer.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF document.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF table.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF palette.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF diagnost.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF image.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] image.c:472:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_Image' (aka 'struct Nlm_image *') [-Wnon-literal-null-conversion] 472 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ image.c:840:26: warning: operator '>>' has lower precedence than '+'; '+' will be evaluated first [-Wshift-op-parentheses] 840 | if(!((mask >> hi + low) & (unsigned long)1)) break; | ~~ ~~~^~~~~ image.c:840:26: note: place parentheses around the '+' expression to silence this warning 840 | if(!((mask >> hi + low) & (unsigned long)1)) break; | ^ | ( ) 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pictur3d.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prim3d1.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prim3d2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prim3d3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prim3d4.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prim3d5.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] prim3d5.c:302:12: warning: use of unary operator that may be intended as compound assignment (-=) 302 | reg1 =- reg1; | ^~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF viewer3d.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vibmouse.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF netscape.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF imagelst.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF treeview.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] treeview.c:177:13: warning: cast to smaller integer type 'Nlm_Int4' (aka 'int') from 'Nlm_VoidPtr' (aka 'void *') [-Wvoid-pointer-to-int-cast] 177 | length= (Int4)tree_getNode(cursor, TREE_NODE_FMT_DISTANCE, &size); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treeview.c:187:8: warning: cast to smaller integer type 'Nlm_Int4' (aka 'int') from 'Nlm_VoidPtr' (aka 'void *') [-Wvoid-pointer-to-int-cast] 187 | a= (Int4) tree_getNode(cursor, TREE_NODE_FMT_ICON, &size); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF shim3d.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF odlbox.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libvibrant.a ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o cp -p libvibrant.a ../lib ranlib ../lib/libvibrant.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF accentr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF accutils.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libncbiacc.a ar cru libncbiacc.a accentr.o accutils.o cp -p libncbiacc.a ../lib ranlib ../lib/libncbiacc.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF drawseq.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dotmatrx.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF fea2seg.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF fstyle.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF smdlg1.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF smdlg2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF smdlg3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF smtools.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF styleman.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF stylemui.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF glbpic.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF layout.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF saldist.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] saldist.c:1289:12: warning: expression result unused [-Wunused-value] 1289 | *from++; | ^~~~~~~ saldist.c:1302:11: warning: expression result unused [-Wunused-value] 1302 | *from++; | ^~~~~~~ saldist.c:1493:14: warning: add explicit braces to avoid dangling else [-Wdangling-else] 1493 | else { | ^ saldist.c:1585:15: warning: add explicit braces to avoid dangling else [-Wdangling-else] 1585 | else { | ^ saldist.c:1688:18: warning: add explicit braces to avoid dangling else [-Wdangling-else] 1688 | else { | ^ 5 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF saled.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] saled.c:2363:25: warning: taking the absolute value of unsigned type 'unsigned int' has no effect [-Wabsolute-value] 2363 | line=abs(adp->alignline[adp->caret_line] -adp->alignline[j]); | ^ saled.c:2363:25: note: remove the call to 'abs' since unsigned values cannot be negative 2363 | line=abs(adp->alignline[adp->caret_line] -adp->alignline[j]); | ^~~ saled.c:2449:25: warning: taking the absolute value of unsigned type 'unsigned int' has no effect [-Wabsolute-value] 2449 | line=abs(adp->alignline[adp->caret_line] -adp->alignline[j]); | ^ saled.c:2449:25: note: remove the call to 'abs' since unsigned values cannot be negative 2449 | line=abs(adp->alignline[adp->caret_line] -adp->alignline[j]); | ^~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salfiles.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] salfiles.c:77:11: warning: result of comparison of constant 255 with expression of type 'Nlm_Char' (aka 'char') is always true [-Wtautological-constant-out-of-range-compare] 77 | while (c!=255 && c!=NULLB && c!=EOF && c!='\0' && c!='\n') | ~^ ~~~ salfiles.c:335:79: warning: result of comparison of constant 255 with expression of type 'Nlm_Char' (aka 'char') is always true [-Wtautological-constant-out-of-range-compare] 335 | while (nextsep != NULL || (lastchar != EOF && lastchar != NULLB && lastchar != 255)) { | ~~~~~~~~ ^ ~~~ salfiles.c:1123:13: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 1123 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ salfiles.c:1213:13: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqIdPtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 1213 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ salfiles.c:1444:27: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 1444 | while (tmp!='\0' && !isdigit (*tmp)) | ^~~~ | (void *)0 salfiles.c:1446:24: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 1446 | if (tmp!='\0') | ^~~~ | (void *)0 salfiles.c:1455:27: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 1455 | while (tmp!='\0' && !isdigit (*tmp)) | ^~~~ | (void *)0 salfiles.c:1457:24: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 1457 | if (tmp!='\0') | ^~~~ | (void *)0 salfiles.c:1536:27: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 1536 | while (tmp!='\0' && !isdigit (*tmp)) | ^~~~ | (void *)0 salfiles.c:1538:24: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 1538 | if (tmp!='\0') | ^~~~ | (void *)0 salfiles.c:1547:27: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 1547 | while (tmp!='\0' && !isdigit (*tmp)) | ^~~~ | (void *)0 salfiles.c:1549:24: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 1549 | if (tmp!='\0') | ^~~~ | (void *)0 12 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salpanel.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] salpanel.c:331:17: warning: expression result unused [-Wunused-value] 331 | offsettmp; | ^~~~~~~~~ salpanel.c:476:20: warning: add explicit braces to avoid dangling else [-Wdangling-else] 476 | else | ^ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salparam.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] salparam.c:1721:7: warning: comparison of array 'str' equal to a null pointer is always false [-Wtautological-pointer-compare] 1721 | if (str == NULL) | ^~~ ~~~~ salparam.c:2959:16: warning: comparison of array 'feat->label' not equal to a null pointer is always true [-Wtautological-pointer-compare] 2959 | if (feat->label != NULL) | ~~~~~~^~~~~ ~~~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salsa.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] salsa.c:1799:12: warning: comparison of array 'adp->tmpfile' not equal to a null pointer is always true [-Wtautological-pointer-compare] 1799 | if (adp->tmpfile != NULL && adp->tmpfile[0] != '\0') | ~~~~~^~~~~~~ ~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqfltr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqgraph.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqgrphx.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqmtrx.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqpcc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqanal.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF aacomp.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqscrl.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] seqscrl.c:46:5: warning: expression result unused [-Wunused-value] 46 | (SeqScrollDataPtr) MemFree (ssdp); | ^ ~~~~~~~~~~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF valdlg.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vsm.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vsmfile.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vsmutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF udvgraph.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF udvopen.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] udvopen.c:1180:9: warning: address of array 'szName' will always evaluate to 'true' [-Wpointer-bool-conversion] 1180 | if (szName){ | ~~ ^~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF udvpanel.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dotvibrant.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] dotvibrant.c:5315:3: warning: expression result unused [-Wunused-value] 5315 | *n++; | ^~~~ dotvibrant.c:6451:11: warning: comparison of array 'path' not equal to a null pointer is always true [-Wtautological-pointer-compare] 6451 | if (path != NULL) | ^~~~ ~~~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dlgutil1.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] dlgutil1.c:3136:30: warning: expression which evaluates to zero treated as a null pointer constant of type 'AuthListPtr' (aka 'struct authors *') [-Wnon-literal-null-conversion] 3136 | if (rbd.fp == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dlgutil2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] dlgutil2.c:945:13: warning: comparison of array 'last' equal to a null pointer is always false [-Wtautological-pointer-compare] 945 | if (last == NULL || StringCmp (cldp->label, last) != 0) { | ^~~~ ~~~~ dlgutil2.c:8564:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 8564 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF e2trmlst.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] e2trmlst.c:2230:52: warning: relational comparison result unused [-Wunused-comparison] 2230 | for (row = 1, termPtr = e2TermListPtr->list; row <= *count, termPtr != NULL; row++, termPtr = termPtr->next) { | ~~~~^~~~~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF e2docsum.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] e2docsum.c:3305:14: warning: comparison of array 'sfp->launchPopups' not equal to a null pointer is always true [-Wtautological-pointer-compare] 3305 | if (sfp->launchPopups != NULL) { | ~~~~~^~~~~~~~~~~~ ~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2graphic.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] asn2graphic.c:779:9: warning: comparison of array 'buf' not equal to a null pointer is always true [-Wtautological-pointer-compare] 779 | if (buf != NULL) { | ^~~ ~~~~ asn2graphic.c:789:9: warning: comparison of array 'buf' not equal to a null pointer is always true [-Wtautological-pointer-compare] 789 | if (buf != NULL) { | ^~~ ~~~~ asn2graphic.c:894:9: warning: comparison of array 'buf' not equal to a null pointer is always true [-Wtautological-pointer-compare] 894 | if (buf != NULL) { | ^~~ ~~~~ asn2graphic.c:1241:21: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion] 1241 | FIP->GroupLabel = NoLabel; | ^~~~~~~ 4 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF medview.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bspview.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gbfview.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gphview.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gphdraw.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gxydraw.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gtrdraw.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqpanel.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] seqpanel.c:4372:34: warning: passing 'Nlm_Uint1Ptr' (aka 'unsigned char *') to parameter of type 'Nlm_CharPtr' (aka 'char *') converts between pointers to integer types where one is of the unique plain 'char' type and the other is not [-Wpointer-sign] 4372 | complement_string (file_line + SEQ_ED_PRINT_SEQ_OFFSET); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../include/salutil.h:78:47: note: passing argument to parameter 'str' here 78 | NLM_EXTERN CharPtr complement_string (CharPtr str); | ^ seqpanel.c:8665:22: warning: incompatible pointer types passing 'FILE *' (aka 'struct __sFILE *') to parameter of type 'const char *' [-Wincompatible-pointer-types] 8665 | fputs (fp, printed_line); | ^~ /usr/include/stdio.h:261:35: note: passing argument to parameter here 261 | int fputs(const char * __restrict, FILE * __restrict); | ^ seqpanel.c:8665:26: warning: incompatible pointer types passing 'Nlm_CharPtr' (aka 'char *') to parameter of type 'FILE *' (aka 'struct __sFILE *') [-Wincompatible-pointer-types] 8665 | fputs (fp, printed_line); | ^~~~~~~~~~~~ /usr/include/stdio.h:261:54: note: passing argument to parameter here 261 | int fputs(const char * __restrict, FILE * __restrict); | ^ seqpanel.c:8761:20: warning: incompatible pointer types passing 'FILE *' (aka 'struct __sFILE *') to parameter of type 'const char *' [-Wincompatible-pointer-types] 8761 | fputs (fp, printed_line); | ^~ /usr/include/stdio.h:261:35: note: passing argument to parameter here 261 | int fputs(const char * __restrict, FILE * __restrict); | ^ seqpanel.c:8761:24: warning: incompatible pointer types passing 'Nlm_CharPtr' (aka 'char *') to parameter of type 'FILE *' (aka 'struct __sFILE *') [-Wincompatible-pointer-types] 8761 | fputs (fp, printed_line); | ^~~~~~~~~~~~ /usr/include/stdio.h:261:54: note: passing argument to parameter here 261 | int fputs(const char * __restrict, FILE * __restrict); | ^ seqpanel.c:9899:23: warning: implicit conversion from enumeration type 'enum EBlastStage' to different enumeration type 'enum blast_hint' [-Wenum-conversion] 9899 | options->hint = eNone; | ~ ^~~~~ 6 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ingengraph.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ingenext.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] ingenext.c:272:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 272 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){ | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenext.c:272:18: note: place parentheses around the assignment to silence this warning 272 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){ | ^ | ( ) ingenext.c:272:18: note: use '==' to turn this assignment into an equality comparison 272 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){ | ^ | == ingenext.c:535:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 535 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){ | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenext.c:535:18: note: place parentheses around the assignment to silence this warning 535 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){ | ^ | ( ) ingenext.c:535:18: note: use '==' to turn this assignment into an equality comparison 535 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){ | ^ | == ingenext.c:1369:7: warning: comparison of array 'eval' not equal to a null pointer is always true [-Wtautological-pointer-compare] 1369 | if (eval != NULL) | ^~~~ ~~~~ ingenext.c:1376:7: warning: comparison of array 'eval' not equal to a null pointer is always true [-Wtautological-pointer-compare] 1376 | if (eval != NULL) | ^~~~ ~~~~ ingenext.c:1834:22: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 1834 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenext.c:1834:22: note: place parentheses around the assignment to silence this warning 1834 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE)) | ^ | ( ) ingenext.c:1834:22: note: use '==' to turn this assignment into an equality comparison 1834 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE)) | ^ | == ingenext.c:2025:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 2025 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE)) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenext.c:2025:19: note: place parentheses around the assignment to silence this warning 2025 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE)) | ^ | ( ) ingenext.c:2025:19: note: use '==' to turn this assignment into an equality comparison 2025 | while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE)) | ^ | == 6 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ingenwin.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] ingenwin.c:1270:10: warning: cast to smaller integer type 'Nlm_Boolean' (aka 'unsigned char') from 'SeqLocPtr' (aka 'struct valnode *') [-Wpointer-to-int-cast] 1270 | while ((Boolean)(slp_feat=SeqLocFindNext(slp_dust,slp_feat))){ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:2380:16: warning: address of 'sfc' will always evaluate to 'true' [-Wpointer-bool-conversion] 2380 | if (&sfc) | ~~ ^~~ ingenwin.c:2814:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 2814 | if (subSeg=FindSegPrim(v, pt, NULL, NULL, &prim)){ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ingenwin.c:2814:13: note: place parentheses around the assignment to silence this warning 2814 | if (subSeg=FindSegPrim(v, pt, NULL, NULL, &prim)){ | ^ | ( ) ingenwin.c:2814:13: note: use '==' to turn this assignment into an equality comparison 2814 | if (subSeg=FindSegPrim(v, pt, NULL, NULL, &prim)){ | ^ | == 3 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF macrodlg.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] macrodlg.c:3076:29: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 3076 | sprintf (buf, "%d", v->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~ | %ld macrodlg.c:3082:29: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 3082 | sprintf (buf, "%d", v->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~ | %ld macrodlg.c:3088:29: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 3088 | sprintf (buf, "%d", v->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~ | %ld macrodlg.c:7368:25: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 7368 | sprintf (buf, "%d", vnp->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~ | %ld macrodlg.c:7373:25: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 7373 | sprintf (buf, "%d", vnp->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~ | %ld macrodlg.c:7378:25: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 7378 | sprintf (buf, "%d", vnp->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~ | %ld macrodlg.c:15186:30: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 15186 | sprintf (num, "%d^", action->location->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | %ld macrodlg.c:15188:29: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 15188 | sprintf (num, "%d", action->location->data.intvalue + 1); | ~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | %ld macrodlg.c:25755:27: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 25755 | sprintf (buf, "%d", func->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~~ | %ld macrodlg.c:25776:27: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 25776 | sprintf (buf, "%d", func->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~~~ | %ld 10 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF biosrc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cdrgn.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF import.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] import.c:3776:22: warning: 'extern' variable has an initializer [-Wextern-initializer] 3776 | extern const CharPtr kDoNotEditTitle = "You are manually editing a title. If you continue, the title will not be automatically updated if the taxonomy information changes. Are you sure you want to do this? It is a very bad idea."; | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pubdesc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] pubdesc.c:5592:15: warning: comparison of array 'nsp->names' not equal to a null pointer is always true [-Wtautological-pointer-compare] 5592 | if (nsp->names != NULL) { | ~~~~~^~~~~ ~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqsub.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mapgene.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prtgene.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salogif.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libncbidesk.a ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o salogif.o cp -p libncbidesk.a ../lib ranlib ../lib/libncbidesk.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvclick.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvgraph.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvopen.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvpanel.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] ddvpanel.c:1105:18: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_PaneL' (aka 'struct Nlm_panel *') [-Wnon-literal-null-conversion] 1105 | if (!dmp) return(FALSE); | ^~~~~~~ 1 warning generated. rm -f libddvlib.a ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o cp -p libddvlib.a ../lib ranlib ../lib/libddvlib.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF corematx.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dvncode.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmmdb1.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmmdb2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmmdb3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objcn3d.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mmdbapi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mmdbapi1.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mmdbapi2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] mmdbapi2.c:1477:6: warning: add explicit braces to avoid dangling else [-Wdangling-else] 1477 | else | ^ mmdbapi2.c:1497:17: warning: if statement has empty body [-Wempty-body] 1497 | if (iCoord) ; /* later eh */ | ^ mmdbapi2.c:1497:17: note: put the semicolon on a separate line to silence this warning 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mmdbapi3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] mmdbapi3.c:843:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] 843 | else if (org->taxname) sprintf(orgstring, "ORGANISM_SCIENTIFIC: %s", | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mmdbapi4.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mmdbentr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vastsubs.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF prunebsc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] prunebsc.c:559:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 559 | if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ prunebsc.c:559:13: note: place parentheses around the assignment to silence this warning 559 | if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name)) | ^ | ( ) prunebsc.c:559:13: note: use '==' to turn this assignment into an equality comparison 559 | if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name)) | ^ | == prunebsc.c:574:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 574 | if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ prunebsc.c:574:13: note: place parentheses around the assignment to silence this warning 574 | if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name)) | ^ | ( ) prunebsc.c:574:13: note: use '==' to turn this assignment into an equality comparison 574 | if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name)) | ^ | == prunebsc.c:663:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 663 | if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name)) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ prunebsc.c:663:13: note: place parentheses around the assignment to silence this warning 663 | if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name)) | ^ | ( ) prunebsc.c:663:13: note: use '==' to turn this assignment into an equality comparison 663 | if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name)) | ^ | == 3 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objcdd.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cddutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cddutil.c:1034:8: warning: address of function 'CddHasConsensus' will always evaluate to 'true' [-Wpointer-bool-conversion] 1034 | if (!CddHasConsensus) return FALSE; | ~^~~~~~~~~~~~~~~ cddutil.c:1034:8: note: prefix with the address-of operator to silence this warning 1034 | if (!CddHasConsensus) return FALSE; | ^ | & cddutil.c:1291:24: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion] 1291 | if (from < 0) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ cddutil.c:4838:17: warning: comparison of array 'ckptFileName' not equal to a null pointer is always true [-Wtautological-pointer-compare] 4838 | if (NULL != ckptFileName) | ~~~~ ^~~~~~~~~~~~ cddutil.c:6267:1: warning: '/*' within block comment [-Wcomment] 6267 | /*---------------------------------------------------------------------------*/ | ^ 4 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cddposutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF objmime.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF strucapi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdalgs.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdatd.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdbwfi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdbwfi.c:114:1: warning: non-void function does not return a value [-Wreturn-type] 114 | } | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdcpal.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdcpal.c:210:1: warning: non-void function does not return a value [-Wreturn-type] 210 | } | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdcpll.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdcpll.c:229:1: warning: non-void function does not return a value [-Wreturn-type] 229 | } | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdcprl.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdcprl.c:261:1: warning: non-void function does not return a value [-Wreturn-type] 261 | } | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdcxei.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdcxei.c:205:1: warning: non-void function does not return a value [-Wreturn-type] 205 | } | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrddgri.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdrsmp.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdsal0.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdsalr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdsalu.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdsalu.c:83:1: warning: non-void function does not return a value [-Wreturn-type] 83 | } | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdsgoi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdsgoi.c:123:1: warning: non-void function does not return a value [-Wreturn-type] 123 | } | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdslo0.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdslor.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdslou.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdslou.c:114:1: warning: non-void function does not return a value [-Wreturn-type] 114 | } | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdspci.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdspea.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdspea.c:189:1: warning: non-void function does not return a value [-Wreturn-type] 189 | } | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdspel.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdspel.c:188:1: warning: non-void function does not return a value [-Wreturn-type] 188 | } | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdspni.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdspni.c:238:1: warning: non-void function does not return a value [-Wreturn-type] 238 | } | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdttb0.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdttb0.c:75:1: warning: non-void function does not return a value [-Wreturn-type] 75 | } | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdttbi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF thrdzsc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] thrdzsc.c:369:1: warning: non-void function does not return a value [-Wreturn-type] 369 | } | ^ 1 warning generated. rm -f libncbimmdb.a ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o cp -p libncbimmdb.a ../lib ranlib ../lib/libncbimmdb.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF csim.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] csim.c:1363:3: warning: add explicit braces to avoid dangling else [-Wdangling-else] 1363 | else | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF db_slist.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dust.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_dust.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF falign.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] falign.c:668:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 668 | if (df = cdiag_prev[l]) { | ~~~^~~~~~~~~~~~~~~ falign.c:668:10: note: place parentheses around the assignment to silence this warning 668 | if (df = cdiag_prev[l]) { | ^ | ( ) falign.c:668:10: note: use '==' to turn this assignment into an equality comparison 668 | if (df = cdiag_prev[l]) { | ^ | == falign.c:710:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 710 | if (df = diag_prev[len1+len2-1-pos]) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ falign.c:710:10: note: place parentheses around the assignment to silence this warning 710 | if (df = diag_prev[len1+len2-1-pos]) { | ^ | ( ) falign.c:710:10: note: use '==' to turn this assignment into an equality comparison 710 | if (df = diag_prev[len1+len2-1-pos]) { | ^ | == falign.c:719:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 719 | if (df=diag_prev[l]) { | ~~^~~~~~~~~~~~~ falign.c:719:9: note: place parentheses around the assignment to silence this warning 719 | if (df=diag_prev[l]) { | ^ | ( ) falign.c:719:9: note: use '==' to turn this assignment into an equality comparison 719 | if (df=diag_prev[l]) { | ^ | == falign.c:881:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 881 | if (df = diag_prev[len1+se2-pos]) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~ falign.c:881:10: note: place parentheses around the assignment to silence this warning 881 | if (df = diag_prev[len1+se2-pos]) { | ^ | ( ) falign.c:881:10: note: use '==' to turn this assignment into an equality comparison 881 | if (df = diag_prev[len1+se2-pos]) { | ^ | == falign.c:889:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 889 | if (df = diag_prev[len1+se2-pos]) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~ falign.c:889:10: note: place parentheses around the assignment to silence this warning 889 | if (df = diag_prev[len1+se2-pos]) { | ^ | ( ) falign.c:889:10: note: use '==' to turn this assignment into an equality comparison 889 | if (df = diag_prev[len1+se2-pos]) { | ^ | == falign.c:1547:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 1547 | if (pf = diag_prev[ocur_diag]) { | ~~~^~~~~~~~~~~~~~~~~~~~~~ falign.c:1547:9: note: place parentheses around the assignment to silence this warning 1547 | if (pf = diag_prev[ocur_diag]) { | ^ | ( ) falign.c:1547:9: note: use '==' to turn this assignment into an equality comparison 1547 | if (pf = diag_prev[ocur_diag]) { | ^ | == falign.c:1897:8: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 1897 | if (s = findS(f->bgf)) { | ~~^~~~~~~~~~~~~~~ falign.c:1897:8: note: place parentheses around the assignment to silence this warning 1897 | if (s = findS(f->bgf)) { | ^ | ( ) falign.c:1897:8: note: use '==' to turn this assignment into an equality comparison 1897 | if (s = findS(f->bgf)) { | ^ | == falign.c:1958:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 1958 | if (pf = diag_prev[cur_diag]) { | ~~~^~~~~~~~~~~~~~~~~~~~~ falign.c:1958:9: note: place parentheses around the assignment to silence this warning 1958 | if (pf = diag_prev[cur_diag]) { | ^ | ( ) falign.c:1958:9: note: use '==' to turn this assignment into an equality comparison 1958 | if (pf = diag_prev[cur_diag]) { | ^ | == falign.c:1999:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 1999 | if (pf = cdiag_prev[cur_diag]) { | ~~~^~~~~~~~~~~~~~~~~~~~~~ falign.c:1999:9: note: place parentheses around the assignment to silence this warning 1999 | if (pf = cdiag_prev[cur_diag]) { | ^ | ( ) falign.c:1999:9: note: use '==' to turn this assignment into an equality comparison 1999 | if (pf = cdiag_prev[cur_diag]) { | ^ | == falign.c:2054:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 2054 | if (pf = cdiag_prev[cur_diag]) { | ~~~^~~~~~~~~~~~~~~~~~~~~~ falign.c:2054:9: note: place parentheses around the assignment to silence this warning 2054 | if (pf = cdiag_prev[cur_diag]) { | ^ | ( ) falign.c:2054:9: note: use '==' to turn this assignment into an equality comparison 2054 | if (pf = cdiag_prev[cur_diag]) { | ^ | == falign.c:2109:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 2109 | if (pf = cdiag_prev[cur_diag]) { | ~~~^~~~~~~~~~~~~~~~~~~~~~ falign.c:2109:9: note: place parentheses around the assignment to silence this warning 2109 | if (pf = cdiag_prev[cur_diag]) { | ^ | ( ) falign.c:2109:9: note: use '==' to turn this assignment into an equality comparison 2109 | if (pf = cdiag_prev[cur_diag]) { | ^ | == 11 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF g_any.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sim2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sim3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sim4.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] sim4.c:630:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 630 | while(i1 = sgp->Blist[i].next) { | ~~~^~~~~~~~~~~~~~~~~~~~ sim4.c:630:12: note: place parentheses around the assignment to silence this warning 630 | while(i1 = sgp->Blist[i].next) { | ^ | ( ) sim4.c:630:12: note: use '==' to turn this assignment into an equality comparison 630 | while(i1 = sgp->Blist[i].next) { | ^ | == sim4.c:1792:16: warning: add explicit braces to avoid dangling else [-Wdangling-else] 1792 | } else goto fin; | ^ sim4.c:1836:27: warning: add explicit braces to avoid dangling else [-Wdangling-else] 1836 | } else goto fin; | ^ sim4.c:1881:27: warning: add explicit braces to avoid dangling else [-Wdangling-else] 1881 | } else goto fin; | ^ sim4.c:1989:22: warning: add explicit braces to avoid dangling else [-Wdangling-else] 1989 | } else goto fin; | ^ sim4.c:2035:22: warning: add explicit braces to avoid dangling else [-Wdangling-else] 2035 | } else goto fin; | ^ sim4.c:2080:22: warning: add explicit braces to avoid dangling else [-Wdangling-else] 2080 | } else goto fin; | ^ 7 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF simutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF slist.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF sec.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tfuns.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF toasn3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF toporg.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] toporg.c:4796:12: warning: logical not is only applied to the left hand side of this comparison [-Wlogical-not-parentheses] 4796 | || !cgp_fig->serial_number != cgp_nofig->serial_number) { | ^ ~~ toporg.c:4796:12: note: add parentheses after the '!' to evaluate the comparison first 4796 | || !cgp_fig->serial_number != cgp_nofig->serial_number) { | ^ | ( ) toporg.c:4796:12: note: add parentheses around left hand side expression to silence this warning 4796 | || !cgp_fig->serial_number != cgp_nofig->serial_number) { | ^ | ( ) 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pobutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] pobutil.c:2380:44: warning: 'size' argument to memset is '0'; did you mean to transpose the last two arguments? [-Wmemset-transposed-args] 2380 | MemSet((Pointer) (&tmp), sizeof(ValNode), 0); | ^ pobutil.c:2380:44: note: parenthesize the third argument to silence pobutil.c:2381:42: warning: 'size' argument to memset is '0'; did you mean to transpose the last two arguments? [-Wmemset-transposed-args] 2381 | MemSet((Pointer) (&si), sizeof(SeqInt), 0); | ^ pobutil.c:2381:42: note: parenthesize the third argument to silence 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF stsutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF suggadj.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF suggest.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF suggslp.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] blast.c:3179:29: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 3179 | if (virtual_oidlist = rdfp_chain->oidlist) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ blast.c:3179:29: note: place parentheses around the assignment to silence this warning 3179 | if (virtual_oidlist = rdfp_chain->oidlist) { | ^ | ( ) blast.c:3179:29: note: use '==' to turn this assignment into an equality comparison 3179 | if (virtual_oidlist = rdfp_chain->oidlist) { | ^ | == blast.c:3210:29: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 3210 | if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blast.c:3210:29: note: place parentheses around the assignment to silence this warning 3210 | if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) { | ^ | ( ) blast.c:3210:29: note: use '==' to turn this assignment into an equality comparison 3210 | if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) { | ^ | == blast.c:10121:25: warning: add explicit braces to avoid dangling else [-Wdangling-else] 10121 | else if( del_index < new_index ) | ^ 3 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blastutl.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] blastutl.c:7554:12: warning: expression result unused [-Wunused-value] 7554 | stop_timer("after repeat filtering"); | ^~~~~~~~~~~~~~~~~~~~~~~~ blastutl.c:10282:12: warning: expression result unused [-Wunused-value] 10282 | stop_timer("after BlastGappedScoreInternal"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blastool.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blastconcat.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF splutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gapxdrop.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] gapxdrop.c:866:4: warning: add explicit braces to avoid dangling else [-Wdangling-else] 866 | else if ((t/10)%3 == 2) k = 3; | ^ gapxdrop.c:869:4: warning: add explicit braces to avoid dangling else [-Wdangling-else] 869 | else if ((t/30) == 2) k = 3; | ^ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalg0.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] bandalg0.c:277:4: warning: add explicit braces to avoid dangling else [-Wdangling-else] 277 | } else { | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalg1.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] bandalg1.c:210:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] 210 | else data->CD[leftd - 1].DD = e; | ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalg2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalg3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalg4.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] bandalg4.c:828:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] 828 | else if ((t/10)%3 == 2) k = 3; | ^ bandalg4.c:831:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] 831 | else if ((t/30) == 2) k = 3; | ^ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalg5.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] bandalg5.c:294:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] 294 | else if ((t/10)%3 == 2) k = 3; | ^ bandalg5.c:297:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] 297 | else if ((t/30) == 2) k = 3; | ^ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bandalgn.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blastkar.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] blastkar.c:4936:10: warning: implicit conversion from 'double' to 'Nlm_Int2' (aka 'short') changes value from 0.5 to 0 [-Wliteral-conversion] 4936 | return 0.5; | ~~~~~~ ^~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF actutils.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] actutils.c:3026:84: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion] 3026 | slp = SeqLocCopyRegion (sip, sfp->location, bsp, 0, bsp->length - 1, strand, FALSE); | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ actutils.c:3035:88: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion] 3035 | slp = SeqLocCopyRegion (sip, cbp->loc, bsp, 0, bsp->length - 1, strand, FALSE); | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ actutils.c:3047:94: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion] 3047 | slp = SeqLocCopyRegion (sip, trp->anticodon, bsp, 0, bsp->length - 1, strand, FALSE); | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 3 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF posit.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF lookup.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] lookup.c:1198:56: warning: for loop has empty body [-Wempty-body] 1198 | index>0; index=mb_lt->next_pos[index], pcount++); | ^ lookup.c:1198:56: note: put the semicolon on a separate line to silence this warning 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF readdb.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] readdb.c:2506:13: warning: add explicit braces to avoid dangling else [-Wdangling-else] 2506 | else | ^ readdb.c:2734:33: warning: 'memset' call operates on objects of type 'char' while the size is based on a different type 'char *' [-Wsizeof-pointer-memaccess] 2734 | memset(blast_dir, 0, sizeof(blast_dir)); | ~~~~~~~~~ ^~~~~~~~~ readdb.c:2734:33: note: did you mean to provide an explicit length? 2734 | memset(blast_dir, 0, sizeof(blast_dir)); | ^~~~~~~~~ readdb.c:3167:37: warning: format specifies type 'long long *' but the argument has type 'Nlm_Int8 *' (aka 'long *') [-Wformat] 3167 | sscanf(ptr, "%lld", &(rdbap->len)); | ~~~~ ^~~~~~~~~~~~~ | %ld readdb.c:6366:34: warning: 'memset' call operates on objects of type 'char' while the size is based on a different type 'Nlm_CharPtr' (aka 'char *') [-Wsizeof-pointer-memaccess] 6366 | MemSet(defline, '\0', sizeof(defline)); | ~~~~~~~ ^~~~~~~ readdb.c:6366:34: note: did you mean to provide an explicit length? 6366 | MemSet(defline, '\0', sizeof(defline)); | ^~~~~~~ readdb.c:9804:26: warning: address of array 'srp->div' will always evaluate to 'true' [-Wpointer-bool-conversion] 9804 | srp->div ? srp->div : "N/A", (long) SequenceLen, | ~~~~~^~~ ~ readdb.c:9853:45: warning: address of array 'pc->div' will always evaluate to 'true' [-Wpointer-bool-conversion] 9853 | (long) direc.owner, pc->div ? pc->div : "N/A", | ~~~~^~~ ~ readdb.c:12404:26: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 12404 | fprintf(fp, "%d\n", gi->data.intvalue); | ~~ ^~~~~~~~~~~~~~~~~ | %ld 7 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbisam.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbisort.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] ncbisort.c:699:12: warning: type specifier missing, defaults to 'int'; ISO C99 and later do not support implicit int [-Wimplicit-int] 699 | register tmpa = UCHAR(*a), tmpb = UCHAR(*b); | ~~~~~~~~ ^ | int ncbisort.c:699:30: warning: type specifier missing, defaults to 'int'; ISO C99 and later do not support implicit int [-Wimplicit-int] 699 | register tmpa = UCHAR(*a), tmpb = UCHAR(*b); | ~~~~~~~~ ^ | int 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salign.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF salptool.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkpcc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkptpf.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkepi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkfltr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkdust.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urksigu.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seg.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkbias.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urkcnsrt.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF urktree.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pseed3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] pseed3.c:507:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 507 | while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pseed3.c:507:20: note: place parentheses around the assignment to silence this warning 507 | while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) { | ^ | ( ) pseed3.c:507:20: note: use '==' to turn this assignment into an equality comparison 507 | while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) { | ^ | == 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pattern1.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] pattern1.c:534:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 534 | if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pattern1.c:534:13: note: place parentheses around the assignment to silence this warning 534 | if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) { | ^ | ( ) pattern1.c:534:13: note: use '==' to turn this assignment into an equality comparison 534 | if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) { | ^ | == pattern1.c:547:11: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 547 | if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pattern1.c:547:11: note: place parentheses around the assignment to silence this warning 547 | if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) { | ^ | ( ) pattern1.c:547:11: note: use '==' to turn this assignment into an equality comparison 547 | if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) { | ^ | == pattern1.c:744:8: warning: type specifier missing, defaults to 'int'; ISO C99 and later do not support implicit int [-Wimplicit-int] 744 | static and(Int4 *result, Int4 *a, Int4 *b, patternSearchItems *patternSearch) | ~~~~~~ ^ | int pattern1.c:750:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 750 | if (result[i] = (a[i] & b[i])) | ~~~~~~~~~~^~~~~~~~~~~~~~~ pattern1.c:750:21: note: place parentheses around the assignment to silence this warning 750 | if (result[i] = (a[i] & b[i])) | ^ | ( ) pattern1.c:750:21: note: use '==' to turn this assignment into an equality comparison 750 | if (result[i] = (a[i] & b[i])) | ^ | == pattern1.c:1107:6: warning: add explicit braces to avoid dangling else [-Wdangling-else] 1107 | else { | ^ 5 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF impatool.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF posit2.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mbalign.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF vecscrn.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF mblast.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] mblast.c:961:13: warning: expression result unused [-Wunused-value] 961 | stop_timer("BioseqBlastEngineCore: before do_the_blast_run()"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mblast.c:987:13: warning: expression result unused [-Wunused-value] 987 | stop_timer("MegaBlastEngineCore: after do_the_blast_run()"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF rpsutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rpsutil.c:399:9: warning: comparison of array 'underlyingMatrixName' not equal to a null pointer is always true [-Wtautological-pointer-compare] 399 | if (underlyingMatrixName != NULL) | ^~~~~~~~~~~~~~~~~~~~ ~~~~ rpsutil.c:2190:16: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 2190 | if (ptr != NULLB) | ^~~~~ | (void *)0 ../include/ncbistd.h:239:15: note: expanded from macro 'NULLB' 239 | #define NULLB '\0' | ^ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF kappa.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF xmlblast.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] xmlblast.c:1016:16: warning: expression which evaluates to zero treated as a null pointer constant of type 'BlastOutputPtr' (aka 'struct struct_BlastOutput *') [-Wnon-literal-null-conversion] 1016 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF bxmlobj.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dotseq.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF spidey.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF motif.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blfmtutl.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libncbitool.a ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o cp -p libncbitool.a ../lib ranlib ../lib/libncbitool.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF matrix_frequency_data.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF compo_mode_condition.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF composition_adjustment.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF nlm_linear_algebra.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF optimize_target_freq.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF compo_heap.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF smith_waterman.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF redo_alignment.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF unified_pvalues.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libblastcompadj.a ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o cp -p libblastcompadj.a ../lib ranlib ../lib/libblastcompadj.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gdfontg.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gdfontmb.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gdfontt.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pictogif.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gdfontl.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gdfonts.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DWIN_GIF -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbidrwg.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libvibgif.a ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o cp -p libvibgif.a ../lib ranlib ../lib/libvibgif.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF algorend.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] algorend.c:1795:24: warning: cast to smaller integer type 'Nlm_Int2' (aka 'short') from 'Nlm_VoidPtr' (aka 'void *') [-Wvoid-pointer-to-int-cast] 1795 | pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ algorend.c:4460:30: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] 4460 | if (prkNew->NodeWhat && AM_PROT) { | ^ ~~~~~~~ algorend.c:4460:30: note: use '&' for a bitwise operation 4460 | if (prkNew->NodeWhat && AM_PROT) { | ^~ | & algorend.c:4460:30: note: remove constant to silence this warning 4460 | if (prkNew->NodeWhat && AM_PROT) { | ^~~~~~~~~~ algorend.c:4801:26: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 4801 | if ((iRenderWhat == PTERMLABELS)) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~ algorend.c:4801:26: note: remove extraneous parentheses around the comparison to silence this warning 4801 | if ((iRenderWhat == PTERMLABELS)) { | ~ ^ ~ algorend.c:4801:26: note: use '=' to turn this equality comparison into an assignment 4801 | if ((iRenderWhat == PTERMLABELS)) { | ^~ | = 3 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dmsel.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dopen.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dsave.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dxprt.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dwin.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cn3dwin.c:2131:11: warning: cast to 'Nlm_VoidPtr' (aka 'void *') from smaller integer type 'int' [-Wint-to-void-pointer-cast] 2131 | (Nlm_VoidPtr) i, NULL); | ^~~~~~~~~~~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dentr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dmsg.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dmatn.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dmodl.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cn3dmodl.c:1304:26: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_ButtoN' (aka 'struct Nlm_button *') [-Wnon-literal-null-conversion] 1304 | fnCn3D_RedrawWrapper(FALSE); | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dshim.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dmesh.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF cn3dstyl.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cn3dstyl.c:1240:30: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_ButtoN' (aka 'struct Nlm_button *') [-Wnon-literal-null-conversion] 1240 | fnCn3D_RedrawWrapper(FALSE); | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ cn3dstyl.c:1351:26: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_ButtoN' (aka 'struct Nlm_button *') [-Wnon-literal-null-conversion] 1351 | fnCn3D_RedrawWrapper(FALSE); | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqcons.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libncbicn3d.a ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o cp -p libncbicn3d.a ../lib ranlib ../lib/libncbicn3d.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF chartables.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF get.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF maketables.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pcre.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pcreposix.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF study.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libregexp.a ar cru libregexp.a chartables.o get.o maketables.o pcre.o pcreposix.o study.o cp -p libregexp.a ../lib ranlib ../lib/libregexp.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF aa_ungapped.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_diagnostics.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_engine.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_extend.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_filter.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_gapalign.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_hits.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_itree.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_lookup.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_message.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_options.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_seg.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_seqsrc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_sw.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_setup.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_stat.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_traceback.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_util.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gapinfo.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF greedy_align.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF link_hsps.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF lookup_wrap.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF na_ungapped.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_math.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ncbi_std.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF pattern.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF phi_extend.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF phi_lookup.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF lookup_util.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_encoding.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_psi.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_psi_priv.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_kappa.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF matrix_freq_ratios.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_hspstream.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_parameters.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_posit.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF phi_gapalign.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_program.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_query_info.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_tune.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_aalookup.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_nalookup.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_aascan.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_nascan.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_dynarray.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF split_query.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gencode_singleton.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF index_ungapped.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF hspfilter_collector.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_hspstream_mt_utils.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_traceback_mt_priv.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF boost_erf.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF jumper.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libblast.a ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o blast_hspstream_mt_utils.o blast_traceback_mt_priv.o boost_erf.o jumper.o cp -p libblast.a ../lib ranlib ../lib/libblast.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_api.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_input.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_format.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] blast_format.c:160:16: warning: expression which evaluates to zero treated as a null pointer constant of type 'BlastOutput *' (aka 'struct struct_BlastOutput *') [-Wnon-literal-null-conversion] 160 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 1 warning generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_mtlock.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_options_api.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_prelim.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_returns.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_seq.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_seqalign.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_tabular.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF repeats_filter.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqsrc_multiseq.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF seqsrc_readdb.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF twoseq_api.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF dust_filter.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF blast_message_api.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF hspfilter_queue.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] hspfilter_queue.c:157:24: warning: incompatible function pointer types assigning to 'BlastHSPWriterInitFn' (aka 'int (*)(void *, void *)') from 'int (*)(void *, BlastHSPResults *)' (aka 'int (*)(void *, struct BlastHSPResults *)') [-Wincompatible-function-pointer-types] 157 | writer->InitFnPtr = &s_BlastHSPQueueInit; | ^ ~~~~~~~~~~~~~~~~~~~~ hspfilter_queue.c:158:24: warning: incompatible function pointer types assigning to 'BlastHSPWriterFinalFn' (aka 'int (*)(void *, void *)') from 'int (*)(void *, BlastHSPResults *)' (aka 'int (*)(void *, struct BlastHSPResults *)') [-Wincompatible-function-pointer-types] 158 | writer->FinalFnPtr = &s_BlastHSPQueueFinal; | ^ ~~~~~~~~~~~~~~~~~~~~~ hspfilter_queue.c:189:26: warning: incompatible function pointer types assigning to 'BlastHSPWriterNewFn' (aka 'struct BlastHSPWriter *(*)(void *, struct BlastQueryInfo *, struct BLAST_SequenceBlk *)') from 'BlastHSPWriter *(*)(void *, BlastQueryInfo *)' (aka 'struct BlastHSPWriter *(*)(void *, struct BlastQueryInfo *)') [-Wincompatible-function-pointer-types] 189 | writer_info->NewFnPtr = &s_BlastHSPQueueNew; | ^ ~~~~~~~~~~~~~~~~~~~ 3 warnings generated. rm -f libblastapi.a ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o cp -p libblastapi.a ../lib ranlib ../lib/libblastapi.a cc -o asntool -O -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -L../lib asntool.c asncode.c ../lib/libncbi.a -lm asncode.c:737:55: warning: format specifies type 'int' but the argument has type 'Nlm_Int8' (aka 'long') [-Wformat] 736 | sprintf (iter->buf, "%s %d\n", AsnCodeCleanName (avtp->name, lclbuf, | ~~ | %ld 737 | CLEAN_FOR_SLOT, iter -> acip -> maxDefineLength), avtp->intvalue); | ^~~~~~~~~~~~~~ asncode.c:3206:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] 3206 | } else if (now_atp->type->isa == CHOICE_TYPE) { | ^ asncode.c:4286:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] 4286 | } else { | ^ 3 warnings generated. cp -p asntool ../bin make -f makedemo.unx GNUTLS_INCLUDE="" GNUTLS_LIBS="" CFLAGS1="-DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c" LDFLAGS1="-O" SHELL="/bin/sh" OTHERLIBS="-lm" LCL="fbd" RAN="ranlib" AR="ar" CC="cc" ./ln-if-absent ../demo/*.* . ./ln-if-absent ../regexp/test/*.* . ./ln-if-absent ../regexp/demo/*.* . ./ln-if-absent ../internal/*.* . set: No match. *** Error code 1 (ignored) chmod -R ug+rw,o+r . cc -o testcore -O -I../include -L../lib testcore.c -lncbi -lm cc -o makeset -O -I../include -L../lib makeset.c -lncbiobj -lncbi -lm In file included from makeset.c:9: ../include/all.h:7293:9: warning: 'RNA_QUAL' macro redefined [-Wmacro-redefined] 7293 | #define RNA_QUAL &at[2254] | ^ ../include/all.h:5823:9: note: previous definition is here 5823 | #define RNA_QUAL &at[1025] | ^ 1 warning generated. cc -o getmesh -O -I../include -L../lib getmesh.c -lncbiobj -lncbi -lm cc -o indexpub -O -I../include -L../lib indexpub.c -lncbiobj -lncbi -lm cc -o getpub -O -I../include -L../lib getpub.c -lncbiobj -lncbi -lm cc -o testobj -O -I../include -L../lib testobj.c -lncbiobj -lncbi -lm cc -o seqtest -O -I../include -L../lib seqtest.c -lncbiobj -lncbi -lm cc -o dosimple -O -I../include -L../lib dosimple.c -lncbiobj -lncbi -lm cc -o asn2ff -O -I../include -L../lib asn2ff.c -lncbiobj -lncbi -lm cc -o checksub -O -I../include -L../lib checksub.c -lncbiobj -lncbi -lm cc -o asndhuff -O -I../include -L../lib asndhuff.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm asndhuff.c:182:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 182 | for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ asndhuff.c:182:21: note: place parentheses around the assignment to silence this warning 182 | for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count) | ^ | ( ) asndhuff.c:182:21: note: use '==' to turn this assignment into an equality comparison 182 | for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count) | ^ | == asndhuff.c:221:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 221 | for (count=0; entry=CASN_NextSeqEntry(casnh); ++count) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ asndhuff.c:221:21: note: place parentheses around the assignment to silence this warning 221 | for (count=0; entry=CASN_NextSeqEntry(casnh); ++count) | ^ | ( ) asndhuff.c:221:21: note: use '==' to turn this assignment into an equality comparison 221 | for (count=0; entry=CASN_NextSeqEntry(casnh); ++count) | ^ | == 2 warnings generated. cc -o entrcmd -O -I../include -L../lib entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm cc -o errhdr -O -I../include -L../lib errhdr.c -lncbiobj -lncbi -lm errhdr.c:44:24: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size] 44 | strncat(mod,argv[i],sizeof mod); | ^~~~~~~~~~ errhdr.c:44:24: note: change the argument to be the free space in the destination buffer minus the terminating null byte 44 | strncat(mod,argv[i],sizeof mod); | ^~~~~~~~~~ | sizeof(mod) - strlen(mod) - 1 1 warning generated. cc -o cdscan -O -I../include -L../lib cdscan.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm cc -o findspl -O -I../include -L../lib findspl.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm cc -o ncbisort -O -I../include -L../lib sortcmd.c -lncbitool -lblastcompadj -lncbi -lm cc -o fa2htgs -O -I../include -L../lib fa2htgs.c -lncbiobj -lncbi -lm cc -o testval -O -I../include -L../lib testval.c -lncbiobj -lncbi -lm cc -o vecscreen -O -I../include -L../lib vecscreen.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm cc -o gil2bin -O -I../include -L../lib gil2bin.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm cc -o asn2xml -O -I../include -L../lib asn2xml.c -lncbiobj -lncbi -lm cc -o debruijn -O -I../include -L../lib debruijn.c -lblast -lblastcompadj -lncbi -lm debruijn.c:72:12: warning: assigning to 'Nlm_Uint1 *' (aka 'unsigned char *') from 'Nlm_CharPtr' (aka 'char *') converts between pointers to integer types where one is of the unique plain 'char' type and the other is not [-Wpointer-sign] 72 | alphabet = myargs[1].strvalue; | ^ ~~~~~~~~~~~~~~~~~~ debruijn.c:80:14: warning: passing 'Nlm_Uint1 *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types where one is of the unique plain 'char' type and the other is not [-Wpointer-sign] 80 | k = strlen(alphabet); | ^~~~~~~~ /usr/include/string.h:100:28: note: passing argument to parameter here 100 | size_t strlen(const char *) __pure; | ^ debruijn.c:89:10: warning: assigning to 'Nlm_Uint1 *' (aka 'unsigned char *') from 'char *' converts between pointers to integer types where one is of the unique plain 'char' type and the other is not [-Wpointer-sign] 89 | output = (char *) malloc(outputsize + 1); | ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ debruijn.c:106:8: warning: passing 'Nlm_Uint1 *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types where one is of the unique plain 'char' type and the other is not [-Wpointer-sign] 106 | puts(output); | ^~~~~~ /usr/include/stdio.h:278:23: note: passing argument to parameter here 278 | int puts(const char *); | ^ debruijn.c:109:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] 109 | } | ^ 5 warnings generated. cc -o asn2idx -O -I../include -L../lib asn2idx.c -lncbitool -lblastcompadj -lncbiobj -lncbi -lm cc -o sortbyquote -O -I../include -L../lib sortbyquote.c -lncbiobj -lncbi -lm cc -o subfuse -O -I../include -L../lib subfuse.c -lncbiobj -lncbi -lm cc -o test_regexp -O -I../include -L../lib pcretest.c -lregexp cc -o demo_regexp -O -I../include -L../lib pcredemo.c -lregexp cc -o demo_regexp_grep -O -I../include -L../lib pcregrep.c -lregexp make -f makenet.unx GNUTLS_INCLUDE="" GNUTLS_LIBS="" CFLAGS1="-DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c " LDFLAGS1="-O" SHELL="/bin/sh" AR="ar" CC="cc" RAN="ranlib" OTHERLIBS="-lm" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="-pthread" NETENTREZVERSION="2.02c2ASN1SPEC6 " BLIB31=libvibnet.a VIBLIBS="-L/usr/local/lib -lXm -lXpm -lXft -lfontconfig -lXrender -ljpeg -lpng -lz -lXmu -lXau -lXt -lX11 -lXext" OGLLIBS=" " VIBFLAG="-I/usr/local/include -L/usr/local/lib -DWIN_MOTIF" VIB="Psequin sbtedit Nentrez udv ddv blastcl3 idfetch asn2gb tbl2asn gene2xml entrez2 gbseqget " ./ln-if-absent ../connect/test/*.c . ./ln-if-absent ../network/entrez/client/*.h ../include ./ln-if-absent ../network/entrez/client/*.c . ./ln-if-absent ../network/medarch/client/*.h ../include ./ln-if-absent ../network/medarch/client/*.c . ./ln-if-absent ../network/taxonomy/client/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/taxonomy/client/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/taxon1/common/*.h ../include ./ln-if-absent ../network/taxon1/common/*.c . ./ln-if-absent ../network/taxon1/taxon2/*.h ../include ./ln-if-absent ../network/taxon1/taxon2/*.c . ./ln-if-absent ../network/id0arch/client/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/id0arch/client/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/id1arch/*.h ../include ./ln-if-absent ../network/id1arch/*.c . ./ln-if-absent ../network/id2arch/*.h ../include ./ln-if-absent ../network/id2arch/*.c . ./ln-if-absent ../network/spell/client/*.h ../include ./ln-if-absent ../network/spell/client/*.c . ./ln-if-absent ../network/suggest/client/*.h ../include ./ln-if-absent ../network/suggest/client/*.c . ./ln-if-absent ../network/blast3/client/*.h ../include ./ln-if-absent ../network/blast3/client/*.c . ./ln-if-absent ../tools/taxblast.h ../include ./ln-if-absent ../tools/taxblast.c . ./ln-if-absent /*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/misc/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/misc/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ssparse/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/ssparse/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/libparsn/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/libparsn/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/smart/smartnet/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/www/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/www/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/query/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../internal/query/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/sybutils/ctlib/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/sybutils/oslib/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.c . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/nsclilib/*.h ../include ./ln-if-absent ../network/nsclilib/*.c . ./ln-if-absent ../network/vibnet/*.c . ./ln-if-absent ../network/vibnet/*.h ../include ./ln-if-absent ../cdromlib/*.h ../include ./ln-if-absent ../network/wwwblast/Src/*.c . ./ln-if-absent ../network/wwwblast/Src/*.h ../include ./ln-if-absent ../cdromlib/accentr.c . ./ln-if-absent ../cdromlib/accutils.c . ./ln-if-absent ../sequin/*.* . ./ln-if-absent ../demo/entrez.c . ./ln-if-absent ../demo/seqget.c . ./ln-if-absent ../demo/entrcmd.c . ./ln-if-absent ../demo/batch.c . ./ln-if-absent ../demo/qbatch.c . ./ln-if-absent ../demo/elecpcr.c . ./ln-if-absent ../demo/asn2fast.c . ./ln-if-absent ../demo/asn2asn.c . ./ln-if-absent ../demo/cleanasn.c . ./ln-if-absent ../demo/cspeedtest.c . ./ln-if-absent ../demo/sqn2agp.c . ./ln-if-absent ../demo/sugint.c . ./ln-if-absent ../demo/fetchent.c . ./ln-if-absent ../demo/udvmain.c . ./ln-if-absent ../demo/rtestval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asn2ff.c . ./ln-if-absent ../demo/asn2gb.c . ./ln-if-absent ../demo/asn2fsa.c . ./ln-if-absent ../demo/asn2all.c . ./ln-if-absent ../demo/gene2xml.c . ./ln-if-absent ../demo/asnval.c . ./ln-if-absent ../demo/asndisc.c . ./ln-if-absent ../demo/asnbarval.c . ./ln-if-absent ../demo/aceread_tst.c . ./ln-if-absent ../demo/asnmacro.c . ./ln-if-absent ../demo/asnstrip.c . ./ln-if-absent ../demo/tbl2asn.c . ./ln-if-absent ../demo/raw2delt.c . ./ln-if-absent ../demo/flint.c . ./ln-if-absent ../demo/xlint.c . ./ln-if-absent ../demo/diffshift.c . ./ln-if-absent ../demo/gbseqget.c . ./ln-if-absent ../demo/insdseqget.c . ./ln-if-absent ../demo/nps2gps.c . ./ln-if-absent ../demo/testent2.c . ./ln-if-absent ../demo/trna2sap.c . ./ln-if-absent ../demo/trna2tbl.c . ./ln-if-absent ../demo/entrez2.c . ./ln-if-absent ../demo/condense.c . ./ln-if-absent ../demo/spideymain.c . ./ln-if-absent ../demo/dotmain.c . ./ln-if-absent ../demo/ingenmain.c . ./ln-if-absent ../demo/bl2seq.c . ./ln-if-absent ../demo/blastall.c . ./ln-if-absent ../demo/blast_driver.c . ./ln-if-absent ../demo/src_chk.c . ./ln-if-absent ../demo/tbl_chk.c . ./ln-if-absent ../demo/export_cmt.c . ./ln-if-absent ../internal/parser/flat2asn.c . *** Error code 1 (ignored) ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c . ./ln-if-absent ../network/entrez/server/*.* . set: No match. *** Error code 1 (ignored) ./ln-if-absent ../network/suggest/server/*.* . chmod -R ug+rw,o+r . cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libnetcli.a ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o cp -p libnetcli.a ../lib ranlib ../lib/libnetcli.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] netentr.c:798:5: warning: '/*' within block comment [-Wcomment] 798 | /*MsgSetReadTimeout(Entrez_ni, 60);*/ | ^ netentr.c:2359:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'EntrezHierarchyPtr' (aka 'struct EntrezHierarchy *') [-Wnon-literal-null-conversion] 2359 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libnetentr.a ar cru libnetentr.a netentr.o netlib.o objneten.o cp -p libnetentr.a ../lib ranlib ../lib/libnetentr.a ./ln-if-absent accentr.c Naccentr.c cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libncbiNacc.a ar cru libncbiNacc.a Naccentr.o accutils.o cp -p libncbiNacc.a ../lib ranlib ../lib/libncbiNacc.a ./ln-if-absent accentr.c Caccentr.c cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libncbiCacc.a ar cru libncbiCacc.a Caccentr.o accutils.o cp -p libncbiCacc.a ../lib ranlib ../lib/libncbiCacc.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libvibnet.a ar cru libvibnet.a netcnfg.o trmlst.o docsum.o cp -p libvibnet.a ../lib ranlib ../lib/libvibnet.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] tc2proc.c:427:56: warning: implicit conversion from 'int' to 'Nlm_Int1' (aka 'signed char') changes value from 254 to -2 [-Wconstant-conversion] 427 | return tax_getIdByName(sname, altname, 254); | ~~~~~~~~~~~~~~~ ^~~ tc2proc.c:441:64: warning: implicit conversion from 'int' to 'Nlm_Int1' (aka 'signed char') changes value from 254 to -2 [-Wconstant-conversion] 441 | return tax_getIdByName(sname, altname, 254); /* find by new name and old name */ | ~~~~~~~~~~~~~~~ ^~~ tc2proc.c:453:57: warning: implicit conversion from 'int' to 'Nlm_Int1' (aka 'signed char') changes value from 254 to -2 [-Wconstant-conversion] 453 | tax_id= tax_getIdByName(sname, altname, 254); | ~~~~~~~~~~~~~~~ ^~~ 3 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] taxblast.c:2050:1: warning: non-void function does not return a value [-Wreturn-type] 2050 | } | ^ 1 warning generated. rm -f libncbitxc2.a ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o cp -p libncbitxc2.a ../lib ranlib ../lib/libncbitxc2.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] id1arch.c:563:47: warning: incomplete format specifier [-Wformat] 563 | fprintf(fp,"%-20d%-20s%",old_gi,repl_date); | ^ id1arch.c:558:41: warning: 'sprintf' will always overflow; destination buffer has size 20, but format string expands to at least 21 [-Wformat-overflow] 558 | sprintf(repl_date,"%-20s",shp->replace_date->str); | ^ 2 warnings generated. cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libncbiid1.a ar cru libncbiid1.a id1gen.o id1arch.o accid1.o cp -p libncbiid1.a ../lib ranlib ../lib/libncbiid1.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] rm -f libnetblast.a ar cru libnetblast.a objblst3.o netblap3.o cp -p libnetblast.a ../lib ranlib ../lib/libnetblast.a cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] medutil.c:121:23: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion] 121 | CharPtr str = FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 1 warning generated. rm -f libncbimla.a ar cru libncbimla.a objmla.o medarch.o medutil.o cp -p libncbimla.a ../lib ranlib ../lib/libncbimla.a cc -o Psequin -I. -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequin10.c sequinx.c -lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lconnssl -lncbi -L/usr/local/lib -lXm -lXpm -lXft -lfontconfig -lXrender -ljpeg -lpng -lz -lXmu -lXau -lXt -lX11 -lXext -lm sequin1.c:16157:15: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch] 16157 | switch (wiz->virus_class) { | ^~~~~~~~~~~~~~~~ sequin1.c:16204:15: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch] 16204 | switch (wiz->cultured_kingdom) { | ^~~~~~~~~~~~~~~~~~~~~ sequin1.c:16140:11: warning: enumeration value 'eWizardType_NormalDialogs' not handled in switch [-Wswitch] 16140 | switch (wiz->wizard_type) { | ^~~~~~~~~~~~~~~~ sequin1.c:16328:15: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch] 16328 | switch (wiz->virus_class) { | ^~~~~~~~~~~~~~~~ sequin1.c:16354:15: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch] 16354 | switch (wiz->cultured_kingdom) { | ^~~~~~~~~~~~~~~~~~~~~ sequin1.c:16321:11: warning: enumeration value 'eWizardType_NormalDialogs' not handled in switch [-Wswitch] 16321 | switch (wiz->wizard_type) { | ^~~~~~~~~~~~~~~~ sequin1.c:16687:11: warning: enumeration values 'eVirusFeat_None' and 'eVirusFeat_CDS' not handled in switch [-Wswitch] 16687 | switch (wiz->virus_feat) { | ^~~~~~~~~~~~~~~ sequin1.c:17052:13: warning: enumeration value 'eWizardType_NormalDialogs' not handled in switch [-Wswitch] 17052 | switch (wiz->wizard_type) { | ^~~~~~~~~~~~~~~~ sequin1.c:20626:11: warning: enumeration values 'eWizardType_NormalDialogs' and 'eWizardType_WGS' not handled in switch [-Wswitch] 20626 | switch (wiz->wizard_type) { | ^~~~~~~~~~~~~~~~ sequin1.c:20931:13: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch] 20931 | switch (wiz->virus_class) { | ^~~~~~~~~~~~~~~~ sequin1.c:21036:13: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch] 21036 | switch (wiz->cultured_kingdom) { | ^~~~~~~~~~~~~~~~~~~~~ sequin1.c:21347:11: warning: enumeration value 'eWizardType_NormalDialogs' not handled in switch [-Wswitch] 21347 | switch (wiz->wizard_type) { | ^~~~~~~~~~~~~~~~ sequin1.c:21394:10: warning: illegal character encoding in string literal [-Winvalid-source-encoding] 21394 | -Use the <93>Import Source Table<94> button to import a tab-delimited table\n\ | ^~~~ ~~~~ sequin1.c:21552:10: warning: illegal character encoding in string literal [-Winvalid-source-encoding] 21552 | -Use the <93>Import Source Table<94> button to import a tab-delimited table\n\ | ^~~~ ~~~~ sequin1.c:21632:10: warning: illegal character encoding in string literal [-Winvalid-source-encoding] 21632 | -Use the <93>Import Source Table<94> button to import a tab-delimited table\n\ | ^~~~ ~~~~ sequin1.c:22401:11: warning: enumeration values 'eWizardType_NormalDialogs' and 'eWizardType_WGS' not handled in switch [-Wswitch] 22401 | switch (wiz->wizard_type) { | ^~~~~~~~~~~~~~~~ sequin1.c:27538:11: warning: enumeration values 'eWizardType_NormalDialogs', 'eWizardType_Microsatellite', and 'eWizardType_WGS' not handled in switch [-Wswitch] 27538 | switch (wiz->wizard_type) { | ^~~~~~~~~~~~~~~~ sequin1.c:28943:13: warning: 4 enumeration values not handled in switch: 'eWizardType_NormalDialogs', 'eWizardType_Microsatellite', 'eWizardType_DLoop'... [-Wswitch] 28943 | switch (wiz->wizard_type) { | ^~~~~~~~~~~~~~~~ sequin1.c:28976:11: warning: 5 enumeration values not handled in switch: 'eWizardType_NormalDialogs', 'eWizardType_UnculturedSamples', 'eWizardType_Microsatellite'... [-Wswitch] 28976 | switch (wiz->wizard_type) { | ^~~~~~~~~~~~~~~~ sequin1.c:29038:11: warning: 5 enumeration values not handled in switch: 'eWizardType_NormalDialogs', 'eWizardType_UnculturedSamples', 'eWizardType_Microsatellite'... [-Wswitch] 29038 | switch (wiz->wizard_type) { | ^~~~~~~~~~~~~~~~ sequin1.c:32916:58: warning: data argument not used by format string [-Wformat-extra-args] 32916 | fprintf (lip->fp, "%s (too short)\n", a->id, "Low Quality"); | ~~~~~~~~~~~~~~~~~~ ^ sequin1.c:33416:7: warning: illegal character encoding in string literal [-Winvalid-source-encoding] 33416 | Click <91>Import Nucleotide Alignment<92> to load your nucleotide alignment file.\n\ | ^~~~ ~~~~ sequin1.c:33417:7: warning: illegal character encoding in string literal [-Winvalid-source-encoding] 33417 | Click <91>Custom Alignment Settings<92> if there is trouble reading your alignment file.\n\ | ^~~~ ~~~~ sequin1.c:33916:11: warning: 7 enumeration values not handled in switch: 'eWizardType_NormalDialogs', 'eWizardType_UnculturedSamples', 'eWizardType_Viruses'... [-Wswitch] 33916 | switch (frm->wiz->wizard_type) { | ^~~~~~~~~~~~~~~~~~~~~ sequin1.c:34038:11: warning: enumeration values 'eWizardType_NormalDialogs' and 'eWizardType_WGS' not handled in switch [-Wswitch] 34038 | switch (frm->wiz->wizard_type) { | ^~~~~~~~~~~~~~~~~~~~~ sequin1.c:34089:11: warning: enumeration values 'eWizardType_NormalDialogs' and 'eWizardType_WGS' not handled in switch [-Wswitch] 34089 | switch (wiz->wizard_type) { | ^~~~~~~~~~~~~~~~ 26 warnings generated. sequin2.c:7795:56: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion] 7795 | if (sep == NULL || StringHasNoText (valname)) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sequin2.c:7796:33: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion] 7796 | if (! IS_Bioseq (sep)) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sequin2.c:7798:68: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion] 7798 | if (bsp == NULL || bsp->mol != mol || bsp->descr == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sequin2.c:7800:57: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion] 7800 | if (vnp == NULL || vnp->data.ptrvalue == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sequin2.c:27333:57: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion] 27333 | if (sep == NULL || sep->data.ptrvalue == NULL) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sequin2.c:27348:32: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion] 27348 | if (!IS_Bioseq (sep)) return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 6 warnings generated. sequin4.c:4989:52: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion] 4989 | salp = Sequin_GlobalAlign2Seq(bsp, sbp->bsp, FALSE); | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sequin4.c:4993:49: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion] 4993 | salp = Sqn_GlobalAlign2Seq(bsp, sbp->bsp, FALSE); | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sequin4.c:14072:67: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion] 14072 | salp = Sequin_GlobalAlign2Seq(master_bsp, vnp->data.ptrvalue, FALSE); | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 3 warnings generated. sequin5.c:18184:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 18184 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ sequin5.c:19773:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion] 19773 | return FALSE; | ^~~~~ ../include/ncbistd.h:247:15: note: expanded from macro 'FALSE' 247 | #define FALSE ((Nlm_Boolean)0) | ^~~~~~~~~~~~~~~~ 2 warnings generated. sequin6.c:11491:12: warning: comparison of array 'hfp->file' equal to a null pointer is always false [-Wtautological-pointer-compare] 11491 | if (hfp->file == NULL || hfp->file [0] == '\0') return FALSE; | ~~~~~^~~~ ~~~~ sequin6.c:11766:12: warning: comparison of array 'hfp->file' equal to a null pointer is always false [-Wtautological-pointer-compare] 11766 | if (hfp->file == NULL || hfp->file [0] == '\0') return FALSE; | ~~~~~^~~~ ~~~~ 2 warnings generated. sequin8.c:10165:39: warning: self-comparison always evaluates to true [-Wtautological-compare] 10165 | } else if (left2 <= left1 && right2 >= right2) { | ^ sequin8.c:10507:69: warning: self-comparison always evaluates to false [-Wtautological-compare] 10507 | if (tpa_conflict != eIntervalConflict_none || prim_conflict != prim_conflict) { | ^ sequin8.c:10513:69: warning: self-comparison always evaluates to false [-Wtautological-compare] 10513 | if (tpa_conflict != eIntervalConflict_none || prim_conflict != prim_conflict) { | ^ sequin8.c:17767:33: warning: self-comparison always evaluates to false [-Wtautological-compare] 17767 | } else if (fcontext2.itemID < fcontext2.itemID) { | ^ 4 warnings generated. sequin9.c:2710:7: warning: comparison of array 'path' equal to a null pointer is always false [-Wtautological-pointer-compare] 2710 | if (path == NULL || config == NULL || config->data.ptrvalue == NULL) return; | ^~~~ ~~~~ 1 warning generated. : Psequin cc -o sbtedit -I. -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sbtedit.c -lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lncbi -L/usr/local/lib -lXm -lXpm -lXft -lfontconfig -lXrender -ljpeg -lpng -lz -lXmu -lXau -lXt -lX11 -lXext -lm : sbtedit cc -o Nentrez -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF entrez.c -lncbiid1 -lvibnet -lncbicn3d -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib -lnetblast -lncbitool -lblastcompadj -lncbiNacc -lnetentr -lnetcli -lncbiacc -lvibrant -lncbicdr -lncbiobj -lncbi -L/usr/local/lib -lXm -lXpm -lXft -lfontconfig -lXrender -ljpeg -lpng -lz -lXmu -lXau -lXt -lX11 -lXext -lm cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" udvmain.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] cc -o udv -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF udvmain.o -lncbiid1 -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbitool -lblastcompadj -lncbiobj -lncbi -L/usr/local/lib -lXm -lXpm -lXft -lfontconfig -lXrender -ljpeg -lpng -lz -lXmu -lXau -lXt -lX11 -lXext -lm cc -DNDEBUG -O2 -pipe -Wno-error=int-conversion -Wno-error=incompatible-function-pointer-types -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -c -I../include -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ddvmain.c cc: warning: argument unused during compilation: '-L/usr/local/lib' [-Wunused-command-line-argument] ddvmain.c:147:13: warning: 'extern' variable has an initializer [-Wextern-initializer] 147 | extern Args DDV_myargs[NUMARGS] = { | ^ 1 warning generated. cc -o ddv -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF ddvmain.o -lncbiid1 -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib -lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbitool -lblastcompadj -lncbiobj -lncbi -L/usr/local/lib -lXm -lXpm -lXft -lfontconfig -lXrender -ljpeg -lpng -lz -lXmu -lXau -lXt -lX11 -lXext -lm cc -g -o blastcl3 -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF -DBLAST_CS_API blastall.c -lblastapi -lblast -lnetblast -lncbitool -lblastcompadj -lnetcli -lncbiobj -lncbi -lm cc -g -o idfetch -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF idfetch.c -lncbiid1 -lnetcli -lncbiobj -lconnssl -lncbi -lm cc -g -o asn2gb -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF asn2gb.c -lncbiid1 -lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi -lm cc -o tbl2asn -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF tbl2asn.c -lncbitool -lblastcompadj -lncbiobj -lnetcli -lconnssl -lncbi -lm cc -g -o gene2xml -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gene2xml.c -lnetcli -lncbiobj -lncbi -lm cc -g -o entrez2 -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF entrez2.c -lncbiid1 -lnetcli -lncbidesk -lblastapi -lblast -lncbimmdb -lncbitool -lblastcompadj -lncbiobj -lvibrant -lncbi -L/usr/local/lib -lXm -lXpm -lXft -lfontconfig -lXrender -ljpeg -lpng -lz -lXmu -lXau -lXt -lX11 -lXext -lm : entrez2 cc -g -o gbseqget -O -I../include -L../lib -I/usr/local/include -L/usr/local/lib -DWIN_MOTIF gbseqget.c -lncbiid1 -lnetcli -lncbitool -lblastcompadj -lncbiobj -lncbi -lm Put the date stamp to the file ../VERSION ********************************************************* *The new binaries are located in ./ncbi/build/ directory* ********************************************************* =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xau.pc - found ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xft.pc - found ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xrender.pc - found ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found ===> ncbi-toolkit-2017.01.06_9 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for ncbi-toolkit-2017.01.06_9 ===> Generating temporary packing list cd /wrkdirs/usr/ports/biology/ncbi-toolkit/work/ncbi/bin && install -s -m 555 * /wrkdirs/usr/ports/biology/ncbi-toolkit/work/stage/usr/local/bin cd /wrkdirs/usr/ports/biology/ncbi-toolkit/work/ncbi/lib && install -m 0644 *.a /wrkdirs/usr/ports/biology/ncbi-toolkit/work/stage/usr/local/lib/ncbi cd /wrkdirs/usr/ports/biology/ncbi-toolkit/work/ncbi/include && install -m 0644 *.h /wrkdirs/usr/ports/biology/ncbi-toolkit/work/stage/usr/local/include/ncbi cd /wrkdirs/usr/ports/biology/ncbi-toolkit/work/ncbi/include/connect && install -m 0644 *.h /wrkdirs/usr/ports/biology/ncbi-toolkit/work/stage/usr/local/include/ncbi/connect cd /wrkdirs/usr/ports/biology/ncbi-toolkit/work/ncbi/doc/man && install -m 444 * /wrkdirs/usr/ports/biology/ncbi-toolkit/work/stage/usr/local/share/man/man1 cd /wrkdirs/usr/ports/biology/ncbi-toolkit/work/ncbi/data && install -m 0644 * /wrkdirs/usr/ports/biology/ncbi-toolkit/work/stage/usr/local/share/ncbi-toolkit ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-06T23:01:19+0000' 'PKG_NOTE_ports_top_git_hash=5529c5919b' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=1a35b19e6d' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for ncbi-toolkit-2017.01.06_9 ===> Building ncbi-toolkit-2017.01.06_9 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for ncbi-toolkit-2017.01.06_9 build of biology/ncbi-toolkit | ncbi-toolkit-2017.01.06_9 ended at Wed May 7 00:15:44 BST 2025 build time: 00:14:27