=>> Building biology/ncbi-entrez-direct build started at Fri May 2 15:27:43 BST 2025 port directory: /usr/ports/biology/ncbi-entrez-direct package name: ncbi-entrez-direct-14.9.20210423_26 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 3242 Apr 5 02:48 /usr/ports/biology/ncbi-entrez-direct/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: a4e30d4f4f Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 06 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/06/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/ncbi-entrez-direct" EXAMPLESDIR="share/examples/ncbi-entrez-direct" DATADIR="share/ncbi-entrez-direct" WWWDIR="www/ncbi-entrez-direct" ETCDIR="etc/ncbi-entrez-direct" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-entrez-direct DOCSDIR=/usr/local/share/doc/ncbi-entrez-direct EXAMPLESDIR=/usr/local/share/examples/ncbi-entrez-direct WWWDIR=/usr/local/www/ncbi-entrez-direct ETCDIR=/usr/local/etc/ncbi-entrez-direct --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-entrez-direct-14.9.20210423_26 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> ncbi-entrez-direct-14.9.20210423_26 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_26 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ncbi-entrez-direct-14.9.20210423_26 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ncbi-entrez-direct-14.9.20210423_26 for building => SHA256 Checksum OK for edirect-14.9.20210423/edirect.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/fatih-color-v1.10.0_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/surgebase-porter2-56e4718818e8_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/gedex-inflector-16278e9db813_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/klauspost-cpuid-v1.3.1_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/pbnjay-memory-b12e5d931931_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/mattn-go-colorable-v0.1.8_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/mattn-go-isatty-v0.0.12_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/fiam-gounidecode-8deddbd03fec_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/golang-text-v0.3.5_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/golang-sys-v0.5.0_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ncbi-entrez-direct-14.9.20210423_26 for building ===> Extracting for ncbi-entrez-direct-14.9.20210423_26 => SHA256 Checksum OK for edirect-14.9.20210423/edirect.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/fatih-color-v1.10.0_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/surgebase-porter2-56e4718818e8_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/gedex-inflector-16278e9db813_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/klauspost-cpuid-v1.3.1_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/pbnjay-memory-b12e5d931931_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/mattn-go-colorable-v0.1.8_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/mattn-go-isatty-v0.0.12_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/fiam-gounidecode-8deddbd03fec_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/golang-text-v0.3.5_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/golang-sys-v0.5.0_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for ncbi-entrez-direct-14.9.20210423_26 ===> Applying FreeBSD patches for ncbi-entrez-direct-14.9.20210423_26 from /usr/ports/biology/ncbi-entrez-direct/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-entrez-direct-14.9.20210423_26 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.2.37.pkg [pkg-builder.dan.net.uk] Installing bash-5.2.37... [pkg-builder.dan.net.uk] `-- Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] `-- Extracting gettext-runtime-0.23.1: .......... done [pkg-builder.dan.net.uk] Extracting bash-5.2.37: .......... done ===> ncbi-entrez-direct-14.9.20210423_26 depends on executable: bash - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_26 ===> ncbi-entrez-direct-14.9.20210423_26 depends on file: /usr/local/bin/go121 - not found ===> Installing existing package /packages/All/go121-1.21.13_5.pkg [pkg-builder.dan.net.uk] Installing go121-1.21.13_5... [pkg-builder.dan.net.uk] Extracting go121-1.21.13_5: .......... done ===> ncbi-entrez-direct-14.9.20210423_26 depends on file: /usr/local/bin/go121 - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_26 ===> ncbi-entrez-direct-14.9.20210423_26 depends on package: perl5>=5.36<5.37 - not found ===> Installing existing package /packages/All/perl5-5.36.3_3.pkg [pkg-builder.dan.net.uk] Installing perl5-5.36.3_3... [pkg-builder.dan.net.uk] Extracting perl5-5.36.3_3: .......... done ===> ncbi-entrez-direct-14.9.20210423_26 depends on package: perl5>=5.36<5.37 - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_26 ===> ncbi-entrez-direct-14.9.20210423_26 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> ncbi-entrez-direct-14.9.20210423_26 depends on file: /usr/local/bin/ccache - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_26 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for ncbi-entrez-direct-14.9.20210423_26 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for ncbi-entrez-direct-14.9.20210423_26 + uname -s + platform=FreeBSD + pwd + export 'HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/ncbi-entrez-direct-14.9.20210423/cmd' + go build -o xtract.FreeBSD xtract.go + go build -o transmute.FreeBSD transmute.go + go build -o rchive.FreeBSD rchive.go =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-entrez-direct-14.9.20210423_26 depends on package: p5-libwww>=0 - not found ===> Installing existing package /packages/All/p5-libwww-6.78.pkg [pkg-builder.dan.net.uk] Installing p5-libwww-6.78... [pkg-builder.dan.net.uk] `-- Installing p5-Authen-NTLM-1.09_1... [pkg-builder.dan.net.uk] | `-- Installing p5-Digest-HMAC-1.05... [pkg-builder.dan.net.uk] | `-- Extracting p5-Digest-HMAC-1.05: ....... done [pkg-builder.dan.net.uk] `-- Extracting p5-Authen-NTLM-1.09_1: ..... done [pkg-builder.dan.net.uk] `-- Installing p5-Encode-Locale-1.05... [pkg-builder.dan.net.uk] `-- Extracting p5-Encode-Locale-1.05: ... done [pkg-builder.dan.net.uk] `-- Installing p5-File-Listing-6.16... [pkg-builder.dan.net.uk] | `-- Installing p5-HTTP-Date-6.06... [pkg-builder.dan.net.uk] | | `-- Installing p5-TimeDate-2.33,1... [pkg-builder.dan.net.uk] | | `-- Extracting p5-TimeDate-2.33,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting p5-HTTP-Date-6.06: ... done [pkg-builder.dan.net.uk] `-- Extracting p5-File-Listing-6.16: ... done [pkg-builder.dan.net.uk] `-- Installing p5-HTML-Parser-3.83... [pkg-builder.dan.net.uk] | `-- Installing p5-HTML-Tagset-3.24... [pkg-builder.dan.net.uk] | `-- Extracting p5-HTML-Tagset-3.24: ... done [pkg-builder.dan.net.uk] | `-- Installing p5-HTTP-Message-7.00... [pkg-builder.dan.net.uk] | | `-- Installing p5-Clone-0.47... [pkg-builder.dan.net.uk] | | `-- Extracting p5-Clone-0.47: ..... done [pkg-builder.dan.net.uk] | | `-- Installing p5-IO-HTML-1.004... [pkg-builder.dan.net.uk] | | `-- Extracting p5-IO-HTML-1.004: ... done [pkg-builder.dan.net.uk] | | `-- Installing p5-LWP-MediaTypes-6.04... [pkg-builder.dan.net.uk] | | `-- Extracting p5-LWP-MediaTypes-6.04: .... done [pkg-builder.dan.net.uk] | | `-- Installing p5-URI-5.31... [pkg-builder.dan.net.uk] | | `-- Extracting p5-URI-5.31: .......... done [pkg-builder.dan.net.uk] | `-- Extracting p5-HTTP-Message-7.00: .......... done [pkg-builder.dan.net.uk] `-- Extracting p5-HTML-Parser-3.83: .......... done [pkg-builder.dan.net.uk] `-- Installing p5-HTTP-Cookies-6.11... [pkg-builder.dan.net.uk] `-- Extracting p5-HTTP-Cookies-6.11: ....... done [pkg-builder.dan.net.uk] `-- Installing p5-HTTP-Negotiate-6.01_1... [pkg-builder.dan.net.uk] `-- Extracting p5-HTTP-Negotiate-6.01_1: ... done [pkg-builder.dan.net.uk] `-- Installing p5-Net-HTTP-6.23... [pkg-builder.dan.net.uk] | `-- Installing p5-IO-Socket-SSL-2.089... [pkg-builder.dan.net.uk] | | `-- Installing p5-IO-Socket-IP-0.43... [pkg-builder.dan.net.uk] | | `-- Extracting p5-IO-Socket-IP-0.43: ... done [pkg-builder.dan.net.uk] | | `-- Installing p5-Mozilla-CA-20250202... [pkg-builder.dan.net.uk] | | `-- Extracting p5-Mozilla-CA-20250202: .... done [pkg-builder.dan.net.uk] | | `-- Installing p5-Net-SSLeay-1.94... [pkg-builder.dan.net.uk] | | `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] | | `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting p5-Net-SSLeay-1.94: .......... done [pkg-builder.dan.net.uk] | `-- Extracting p5-IO-Socket-SSL-2.089: .......... done [pkg-builder.dan.net.uk] `-- Extracting p5-Net-HTTP-6.23: ......... done [pkg-builder.dan.net.uk] `-- Installing p5-Try-Tiny-0.32... [pkg-builder.dan.net.uk] `-- Extracting p5-Try-Tiny-0.32: ... done [pkg-builder.dan.net.uk] `-- Installing p5-WWW-RobotRules-6.02_1... [pkg-builder.dan.net.uk] `-- Extracting p5-WWW-RobotRules-6.02_1: ..... done [pkg-builder.dan.net.uk] Extracting p5-libwww-6.78: .......... done ===> ncbi-entrez-direct-14.9.20210423_26 depends on package: p5-libwww>=0 - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_26 ===> ncbi-entrez-direct-14.9.20210423_26 depends on package: p5-LWP-Protocol-https>=0 - not found ===> Installing existing package /packages/All/p5-LWP-Protocol-https-6.14.pkg [pkg-builder.dan.net.uk] Installing p5-LWP-Protocol-https-6.14... [pkg-builder.dan.net.uk] Extracting p5-LWP-Protocol-https-6.14: ... done ===> ncbi-entrez-direct-14.9.20210423_26 depends on package: p5-LWP-Protocol-https>=0 - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_26 ===> ncbi-entrez-direct-14.9.20210423_26 depends on package: p5-XML-Simple>=0 - not found ===> Installing existing package /packages/All/p5-XML-Simple-2.25.pkg [pkg-builder.dan.net.uk] Installing p5-XML-Simple-2.25... [pkg-builder.dan.net.uk] `-- Installing p5-XML-Parser-2.47... [pkg-builder.dan.net.uk] | `-- Installing expat-2.7.1... [pkg-builder.dan.net.uk] | `-- Extracting expat-2.7.1: .......... done [pkg-builder.dan.net.uk] `-- Extracting p5-XML-Parser-2.47: .......... done [pkg-builder.dan.net.uk] `-- Installing p5-XML-SAX-1.02... [pkg-builder.dan.net.uk] | `-- Installing p5-XML-NamespaceSupport-1.12... [pkg-builder.dan.net.uk] | `-- Extracting p5-XML-NamespaceSupport-1.12: ... done [pkg-builder.dan.net.uk] | `-- Installing p5-XML-SAX-Base-1.09... [pkg-builder.dan.net.uk] | `-- Extracting p5-XML-SAX-Base-1.09: ....... done [pkg-builder.dan.net.uk] `-- Extracting p5-XML-SAX-1.02: .......... done could not find ParserDetails.ini in /usr/local/lib/perl5/site_perl/XML/SAX [pkg-builder.dan.net.uk] `-- Installing p5-XML-SAX-Expat-0.51_1... [pkg-builder.dan.net.uk] `-- Extracting p5-XML-SAX-Expat-0.51_1: ... done [pkg-builder.dan.net.uk] Extracting p5-XML-Simple-2.25: ..... done ===> ncbi-entrez-direct-14.9.20210423_26 depends on package: p5-XML-Simple>=0 - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_26 ===> ncbi-entrez-direct-14.9.20210423_26 depends on executable: curl - not found ===> Installing existing package /packages/All/curl-8.13.0_1.pkg [pkg-builder.dan.net.uk] Installing curl-8.13.0_1... [pkg-builder.dan.net.uk] `-- Installing brotli-1.1.0,1... [pkg-builder.dan.net.uk] `-- Extracting brotli-1.1.0,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libidn2-2.3.8... [pkg-builder.dan.net.uk] | `-- Installing libunistring-1.3... [pkg-builder.dan.net.uk] | `-- Extracting libunistring-1.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting libidn2-2.3.8: .......... done [pkg-builder.dan.net.uk] `-- Installing libnghttp2-1.65.0... [pkg-builder.dan.net.uk] `-- Extracting libnghttp2-1.65.0: ....... done [pkg-builder.dan.net.uk] `-- Installing libssh2-1.11.1,3... [pkg-builder.dan.net.uk] `-- Extracting libssh2-1.11.1,3: .......... done [pkg-builder.dan.net.uk] `-- Installing zstd-1.5.7... [pkg-builder.dan.net.uk] | `-- Installing liblz4-1.10.0,1... [pkg-builder.dan.net.uk] | `-- Extracting liblz4-1.10.0,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting zstd-1.5.7: .......... done [pkg-builder.dan.net.uk] Extracting curl-8.13.0_1: .......... done ===> ncbi-entrez-direct-14.9.20210423_26 depends on executable: curl - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_26 ===> ncbi-entrez-direct-14.9.20210423_26 depends on package: perl5>=5.36<5.37 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for ncbi-entrez-direct-14.9.20210423_26 ===> Generating temporary packing list cd /wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/ncbi-entrez-direct-14.9.20210423 && install -m 555 accn-at-a-time amino-acid-composition archive-pubmed between-two-genes download-ncbi-data download-pubmed download-sequence efetch efilter einfo elink epost esample esearch esummary exclude-uid-lists expand-current fetch-pubmed filter-stop-words gbf2xml index-extras index-pubmed intersect-uid-lists join-into-groups-of nquire phrase-search pm-collect pm-index pm-invert pm-merge pm-prepare pm-promote pm-refresh pm-stash rchive reorder-columns run-ncbi-converter skip-if-file-exists ecommon.sh sort-uniq-count sort-uniq-count-rank stream-pubmed theme-aliases transmute word-at-a-time xml2tbl xtract xy-plot hlp-xtract.txt transmute xml2json xtract test-edirect align-columns hgvs2spdi sort-table print-columns /wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/stage/usr/local/bin install -m 555 /wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/ncbi-entrez-direct-14.9.20210423/edirect.pl /wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/stage/usr/local/bin install -s -m 555 /wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/ncbi-entrez-direct-14.9.20210423/cmd/*.FreeBSD /wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/stage/usr/local/bin ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-02T14:27:43+0000' 'PKG_NOTE_ports_top_git_hash=5529c5919b' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=a4e30d4f4f' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for ncbi-entrez-direct-14.9.20210423_26 ===> Building ncbi-entrez-direct-14.9.20210423_26 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for ncbi-entrez-direct-14.9.20210423_26 build of biology/ncbi-entrez-direct | ncbi-entrez-direct-14.9.20210423_26 ended at Fri May 2 15:29:18 BST 2025 build time: 00:01:36