=>> Building misc/lbann build started at Tue May 6 03:09:02 BST 2025 port directory: /usr/ports/misc/lbann package name: lbann-0.102.254_4 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1801 Dec 29 14:16 /usr/ports/misc/lbann/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: 1a35b19e6d Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 01 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for lbann-0.102.254_4: ====> MPI (Message Passing Interface) support: you have to select exactly one of them MPICH=on: Parallel processing support via MPICH OPENMPI=off: Parallel processing support via Open MPI ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/misc/lbann/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/lbann/work XDG_CACHE_HOME=/wrkdirs/usr/ports/misc/lbann/work/.cache HOME=/wrkdirs/usr/ports/misc/lbann/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/misc/lbann/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/misc/lbann/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/misc/lbann/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/lbann/work XDG_CACHE_HOME=/wrkdirs/usr/ports/misc/lbann/work/.cache HOME=/wrkdirs/usr/ports/misc/lbann/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/misc/lbann/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/misc/lbann/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/misc/lbann/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -labsl_hash -labsl_log_internal_message -labsl_log_internal_nullguard -labsl_spinlock_wait -lexecinfo -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 " CXXSTD=c++17 BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/lbann" EXAMPLESDIR="share/examples/lbann" DATADIR="share/lbann" WWWDIR="www/lbann" ETCDIR="etc/lbann" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/lbann DOCSDIR=/usr/local/share/doc/lbann EXAMPLESDIR=/usr/local/share/examples/lbann WWWDIR=/usr/local/www/lbann ETCDIR=/usr/local/etc/lbann --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> lbann-0.102.254_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> lbann-0.102.254_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of lbann-0.102.254_4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by lbann-0.102.254_4 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by lbann-0.102.254_4 for building => SHA256 Checksum OK for LLNL-lbann-v0.102-254-g2e3012a9a_GH0.tar.gz. => SHA256 Checksum OK for KIwabuchi-havoqgt-100f63b_GH0.tar.gz. => SHA256 Checksum OK for samadejacobs-moses-28932ce_GH0.tar.gz. => SHA256 Checksum OK for snap-stanford-snap-58a1e6a_GH0.tar.gz. => SHA256 Checksum OK for catchorg-Clara-2bfd8b2_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by lbann-0.102.254_4 for building ===> Extracting for lbann-0.102.254_4 => SHA256 Checksum OK for LLNL-lbann-v0.102-254-g2e3012a9a_GH0.tar.gz. => SHA256 Checksum OK for KIwabuchi-havoqgt-100f63b_GH0.tar.gz. => SHA256 Checksum OK for samadejacobs-moses-28932ce_GH0.tar.gz. => SHA256 Checksum OK for snap-stanford-snap-58a1e6a_GH0.tar.gz. => SHA256 Checksum OK for catchorg-Clara-2bfd8b2_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for lbann-0.102.254_4 ===> Applying FreeBSD patches for lbann-0.102.254_4 from /usr/ports/misc/lbann/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> lbann-0.102.254_4 depends on package: cereal>0 - not found ===> Installing existing package /packages/All/cereal-1.3.2_1.pkg [pkg-builder.dan.net.uk] Installing cereal-1.3.2_1... [pkg-builder.dan.net.uk] `-- Installing boost-libs-1.87.0_1... [pkg-builder.dan.net.uk] | `-- Installing icu-76.1,1... [pkg-builder.dan.net.uk] | `-- Extracting icu-76.1,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting boost-libs-1.87.0_1: .......... done [pkg-builder.dan.net.uk] Extracting cereal-1.3.2_1: .......... done ===== Message from boost-libs-1.87.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> lbann-0.102.254_4 depends on package: cereal>0 - found ===> Returning to build of lbann-0.102.254_4 ===> lbann-0.102.254_4 depends on package: dihydrogen>0 - not found ===> Installing existing package /packages/All/dihydrogen-0.2.1.36_5.pkg [pkg-builder.dan.net.uk] Installing dihydrogen-0.2.1.36_5... [pkg-builder.dan.net.uk] `-- Installing hwloc2-2.11.2... [pkg-builder.dan.net.uk] | `-- Installing level-zero-1.21.9... [pkg-builder.dan.net.uk] | | `-- Installing libfmt-10.2.1... [pkg-builder.dan.net.uk] | | `-- Extracting libfmt-10.2.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing spdlog-1.15.2... [pkg-builder.dan.net.uk] | | `-- Extracting spdlog-1.15.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting level-zero-1.21.9: .......... done [pkg-builder.dan.net.uk] | `-- Installing libpciaccess-0.18.1_1... [pkg-builder.dan.net.uk] | | `-- Installing hwdata-0.394,1... [pkg-builder.dan.net.uk] | | `-- Extracting hwdata-0.394,1: ...... done [pkg-builder.dan.net.uk] | `-- Extracting libpciaccess-0.18.1_1: ..... done [pkg-builder.dan.net.uk] | `-- Installing libxml2-2.11.9... [pkg-builder.dan.net.uk] | | `-- Installing readline-8.2.13_2... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] | | `-- Extracting readline-8.2.13_2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libxml2-2.11.9: .......... done [pkg-builder.dan.net.uk] `-- Extracting hwloc2-2.11.2: .......... done [pkg-builder.dan.net.uk] `-- Installing json-c-0.18... [pkg-builder.dan.net.uk] `-- Extracting json-c-0.18: .......... done [pkg-builder.dan.net.uk] `-- Installing libepoll-shim-0.0.20240608... [pkg-builder.dan.net.uk] `-- Extracting libepoll-shim-0.0.20240608: .......... done [pkg-builder.dan.net.uk] `-- Installing libfabric-1.15.1_4... [pkg-builder.dan.net.uk] `-- Extracting libfabric-1.15.1_4: .......... done [pkg-builder.dan.net.uk] `-- Installing mpich-4.3.0... [pkg-builder.dan.net.uk] | `-- Installing gcc13-13.3.0_2... [pkg-builder.dan.net.uk] | | `-- Installing binutils-2.44,1... [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.7... [pkg-builder.dan.net.uk] | | | `-- Installing liblz4-1.10.0,1... [pkg-builder.dan.net.uk] | | | `-- Extracting liblz4-1.10.0,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.7: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting binutils-2.44,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | `-- Installing mpfr-4.2.2,1... [pkg-builder.dan.net.uk] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] | `-- Extracting gcc13-13.3.0_2: .......... done [pkg-builder.dan.net.uk] | `-- Installing perl5-5.36.3_3... [pkg-builder.dan.net.uk] | `-- Extracting perl5-5.36.3_3: .......... done [pkg-builder.dan.net.uk] `-- Extracting mpich-4.3.0: .......... done [pkg-builder.dan.net.uk] Extracting dihydrogen-0.2.1.36_5: .......... done ===== Message from gcc13-13.3.0_2: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> lbann-0.102.254_4 depends on package: dihydrogen>0 - found ===> Returning to build of lbann-0.102.254_4 ===> lbann-0.102.254_4 depends on package: zstr>0 - not found ===> Installing existing package /packages/All/zstr-1.0.7.pkg [pkg-builder.dan.net.uk] Installing zstr-1.0.7... [pkg-builder.dan.net.uk] Extracting zstr-1.0.7: .. done ===> lbann-0.102.254_4 depends on package: zstr>0 - found ===> Returning to build of lbann-0.102.254_4 ===> lbann-0.102.254_4 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.6.pkg [pkg-builder.dan.net.uk] Installing cmake-core-3.31.6... [pkg-builder.dan.net.uk] `-- Installing expat-2.7.1... [pkg-builder.dan.net.uk] `-- Extracting expat-2.7.1: .......... done [pkg-builder.dan.net.uk] `-- Installing jsoncpp-1.9.6_1... [pkg-builder.dan.net.uk] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg-builder.dan.net.uk] `-- Installing libidn2-2.3.8... [pkg-builder.dan.net.uk] | `-- Installing libunistring-1.3... [pkg-builder.dan.net.uk] | `-- Extracting libunistring-1.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting libidn2-2.3.8: .......... done [pkg-builder.dan.net.uk] `-- Installing libuv-1.51.0... [pkg-builder.dan.net.uk] `-- Extracting libuv-1.51.0: .......... done [pkg-builder.dan.net.uk] `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] `-- Installing rhash-1.4.4_1... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg-builder.dan.net.uk] `-- Extracting rhash-1.4.4_1: .......... done [pkg-builder.dan.net.uk] Extracting cmake-core-3.31.6: .......... done ===> lbann-0.102.254_4 depends on file: /usr/local/bin/cmake - found ===> Returning to build of lbann-0.102.254_4 ===> lbann-0.102.254_4 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,4.pkg [pkg-builder.dan.net.uk] Installing ninja-1.11.1,4... [pkg-builder.dan.net.uk] `-- Installing python311-3.11.12... [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.8... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.8: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-4.0.0... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-4.0.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting python311-3.11.12: .......... done [pkg-builder.dan.net.uk] Extracting ninja-1.11.1,4: ..... done ===== Message from python311-3.11.12: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> lbann-0.102.254_4 depends on executable: ninja - found ===> Returning to build of lbann-0.102.254_4 ===> lbann-0.102.254_4 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-2.3.0_1,1.pkg [pkg-builder.dan.net.uk] Installing pkgconf-2.3.0_1,1... [pkg-builder.dan.net.uk] Extracting pkgconf-2.3.0_1,1: .......... done ===> lbann-0.102.254_4 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of lbann-0.102.254_4 ===> lbann-0.102.254_4 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> lbann-0.102.254_4 depends on file: /usr/local/bin/ccache - found ===> Returning to build of lbann-0.102.254_4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> lbann-0.102.254_4 depends on shared library: libconduit.so - not found ===> Installing existing package /packages/All/conduit-0.9.3.pkg [pkg-builder.dan.net.uk] Installing conduit-0.9.3... [pkg-builder.dan.net.uk] `-- Installing hdf5-1.12.2_2,1... [pkg-builder.dan.net.uk] `-- Extracting hdf5-1.12.2_2,1: .......... done [pkg-builder.dan.net.uk] `-- Installing silo-4.11.68_1... [pkg-builder.dan.net.uk] `-- Extracting silo-4.11.68_1: .......... done [pkg-builder.dan.net.uk] Extracting conduit-0.9.3: .......... done ===> lbann-0.102.254_4 depends on shared library: libconduit.so - found (/usr/local/lib/libconduit.so) ===> Returning to build of lbann-0.102.254_4 ===> lbann-0.102.254_4 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> lbann-0.102.254_4 depends on shared library: libHydrogen_CXX.so - not found ===> Installing existing package /packages/All/hydrogen-linear-algebra-1.5.3_4.pkg [pkg-builder.dan.net.uk] Installing hydrogen-linear-algebra-1.5.3_4... [pkg-builder.dan.net.uk] `-- Installing half-2.2.0... [pkg-builder.dan.net.uk] `-- Extracting half-2.2.0: . done [pkg-builder.dan.net.uk] `-- Installing openblas-0.3.29_1,2... [pkg-builder.dan.net.uk] `-- Extracting openblas-0.3.29_1,2: .......... done [pkg-builder.dan.net.uk] Extracting hydrogen-linear-algebra-1.5.3_4: .......... done ===> lbann-0.102.254_4 depends on shared library: libHydrogen_CXX.so - found (/usr/local/lib/libHydrogen_CXX.so) ===> Returning to build of lbann-0.102.254_4 ===> lbann-0.102.254_4 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> lbann-0.102.254_4 depends on shared library: libprotobuf.so - not found ===> Installing existing package /packages/All/protobuf-29.4,1.pkg [pkg-builder.dan.net.uk] Installing protobuf-29.4,1... [pkg-builder.dan.net.uk] `-- Installing abseil-20250127.0... [pkg-builder.dan.net.uk] `-- Extracting abseil-20250127.0: .......... done [pkg-builder.dan.net.uk] Extracting protobuf-29.4,1: .......... done ===> lbann-0.102.254_4 depends on shared library: libprotobuf.so - found (/usr/local/lib/libprotobuf.so) ===> Returning to build of lbann-0.102.254_4 ===> lbann-0.102.254_4 depends on shared library: libsiloh5.so - found (/usr/local/lib/libsiloh5.so) ===> lbann-0.102.254_4 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for lbann-0.102.254_4 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/misc/lbann/work/.build -- The C compiler identification is Clang 18.1.6 -- The CXX compiler identification is Clang 18.1.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test FLAG__g_OK -- Performing Test FLAG__g_OK - Success -- Performing Test FLAG__Wall_OK -- Performing Test FLAG__Wall_OK - Success -- Performing Test FLAG__Wextra_OK -- Performing Test FLAG__Wextra_OK - Success -- Performing Test FLAG__Wno_unused_parameter_OK -- Performing Test FLAG__Wno_unused_parameter_OK - Success -- Performing Test FLAG__Wnon_virtual_dtor_OK -- Performing Test FLAG__Wnon_virtual_dtor_OK - Success -- Performing Test FLAG__Wshadow_OK -- Performing Test FLAG__Wshadow_OK - Success -- Performing Test FLAG__Wno_deprecated_declarations_OK -- Performing Test FLAG__Wno_deprecated_declarations_OK - Success -- Performing Test FLAG__O0_OK -- Performing Test FLAG__O0_OK - Success -- Looking for C++ include sys/sendfile.h -- Looking for C++ include sys/sendfile.h - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Clara: /wrkdirs/usr/ports/misc/lbann/work/Clara-2bfd8b2/include -- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found suitable version "4.1", minimum required is "3.0") -- Found MPI: TRUE (found suitable version "4.1", minimum required is "3.0") found components: CXX -- Performing Test HYDROGEN_MPI_IS_OPENMPI -- Performing Test HYDROGEN_MPI_IS_OPENMPI - Failed -- Performing Test HYDROGEN_MPI_IS_MVAPICH2 -- Performing Test HYDROGEN_MPI_IS_MVAPICH2 - Failed -- Performing Test HALF_HEADER_OK -- Performing Test HALF_HEADER_OK - Success -- Found HALF: /usr/local/include -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/local/lib/libopenblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/local/lib/libopenblas.so;-lpthread;-lm;-ldl CMake Warning (dev) at /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:441 (message): The package name passed to `find_package_handle_standard_args` (HydrogenLAPACK) does not match the name of the calling package (Hydrogen). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): /usr/local/lib/cmake/hydrogen/modules/FindAndVerifyLAPACK.cmake:107 (find_package_handle_standard_args) /usr/local/lib/cmake/hydrogen/HydrogenConfig.cmake:197 (include) CMakeLists.txt:218 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found HydrogenLAPACK: TRUE -- Found LAPACK: /usr/local/lib/libopenblas.so;-lpthread;-lm;-ldl -- Looking for dgemm -- Looking for dgemm - not found -- Looking for dgemm_ -- Looking for dgemm_ - found -- Looking for dlacpy -- Looking for dlacpy - not found -- Looking for dlacpy_ -- Looking for dlacpy_ - found -- Using BLAS with trailing underscore. -- Using LAPACK with trailing underscore. -- Looking for mkl_dcsrmv -- Looking for mkl_dcsrmv - not found -- Found Hydrogen@1.5.3: /usr/local/lib/cmake/hydrogen -- Found DiHydrogen components: Core;Meta;Patterns -- Found DiHydrogen: /usr/local/lib/cmake/dihydrogen -- Found OpenMP_CXX: -fopenmp=libomp (found version "5.1") -- Found OpenMP: TRUE (found version "5.1") found components: CXX -- Found Protobuf: /usr/local/lib/libprotobuf.so;-lpthread (found suitable version "5.29.4", minimum required is "3.0.0") -- Found ZSTR: /usr/local/include -- Found ZLIB: /usr/lib/libz.so (found version "1.3.1") CMake Deprecation Warning at /usr/local/lib/cmake/conduit/ConduitConfig.cmake:15 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Call Stack (most recent call first): CMakeLists.txt:540 (find_package) -- Conduit was built with HDF5 Support -- Looking for HDF5 at: /usr/local -- Found HDF5: hdf5-shared (found version "1.12.2") -- HDF5_DIR_REAL=/usr/local -- Checking that found HDF5_INCLUDE_DIRS are in HDF5_DIR -- HDF5_INCLUDE_DIRS=/usr/local/include -- /usr/local/include includes HDF5_DIR (/usr/local) -- /usr/local/include includes HDF5_REAL_DIR () -- HDF5 is parallel: false -- Found Conduit: /usr/local (found version 0.9.3) -- CONDUIT_VERSION = 0.9.3 -- CONDUIT_INSTALL_PREFIX = /usr/local -- CONDUIT_IMPORT_ROOT = /usr/local -- CONDUIT_USE_CXX14 = TRUE -- CONDUIT_USE_FMT = TRUE -- CONDUIT_INCLUDE_DIRS = /usr/local/include/conduit -- CONDUIT_FORTRAN_ENABLED = TRUE -- CONDUIT_PYTHON_ENABLED = -- CONDUIT_PYTHON_EXECUTABLE = -- CONDUIT_PYTHON_MODULE_DIR = /usr/local/python-modules/ -- Conduit Relay features: -- CONDUIT_RELAY_WEBSERVER_ENABLED = TRUE -- CONDUIT_RELAY_HDF5_ENABLED = TRUE -- CONDUIT_HDF5_DIR = /usr/local -- CONDUIT_RELAY_ADIOS_ENABLED = FALSE -- CONDUIT_ADIOS_DIR = -- CONDUIT_RELAY_SILO_ENABLED = TRUE -- CONDUIT_SILO_DIR = /usr/local -- CONDUIT_RELAY_MPI_ENABLED = TRUE -- Conduit imported targets: conduit::conduit conduit::conduit_mpi -- Found CONDUIT: /usr/local/lib/cmake/conduit -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE) -- Performing Test LBANN_HAS_PTHREAD_SETAFFINITY_NP -- Performing Test LBANN_HAS_PTHREAD_SETAFFINITY_NP - Failed -- Performing Test LBANN_HAS_PTHREAD_GETAFFINITY_NP -- Performing Test LBANN_HAS_PTHREAD_GETAFFINITY_NP - Failed == LBANN Configuration Summary == PROJECT_SOURCE_DIR: /wrkdirs/usr/ports/misc/lbann/work/lbann-0.102-254-g2e3012a9a PROJECT_BINARY_DIR: /wrkdirs/usr/ports/misc/lbann/work/.build CMAKE_INSTALL_PREFIX: /usr/local CMAKE_BUILD_TYPE: Release CXX FLAGS: -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -Wall -Wextra -Wno-unused-parameter -Wnon-virtual-dtor -Wshadow -Wno-deprecated-declarations -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++17 -DNDEBUG LBANN_GNU_LINUX: FALSE LBANN_HAS_ALUMINUM: FALSE LBANN_HAS_CEREAL: TRUE LBANN_HAS_CEREAL_XML_ARCHIVES: FALSE LBANN_HAS_CNPY: FALSE LBANN_HAS_CUDA: FALSE LBANN_HAS_CUDNN: FALSE LBANN_HAS_CUTENSOR: FALSE LBANN_HAS_CUTT: FALSE LBANN_HAS_DIHYDROGEN: TRUE LBANN_HAS_DISTCONV: FALSE LBANN_HAS_DOXYGEN: FALSE LBANN_HAS_FFTW: FALSE LBANN_HAS_HIPTT: FALSE LBANN_HAS_HYDROGEN: TRUE LBANN_HAS_LBANN_PROTO: TRUE LBANN_HAS_NCCL2: FALSE LBANN_HAS_NVSHMEM: FALSE LBANN_HAS_ONEDNN: FALSE LBANN_HAS_ONEDNN_CPU: FALSE LBANN_HAS_ONEDNN_GPU: FALSE LBANN_HAS_OPENCV: FALSE LBANN_HAS_PROTOBUF: TRUE LBANN_HAS_PYTHON_FRONTEND: FALSE LBANN_HAS_EMBEDDED_PYTHON: FALSE LBANN_HAS_ROCM: FALSE LBANN_HAS_ROCTRACER: FALSE LBANN_HAS_TBINF: FALSE LBANN_HAS_VTUNE: FALSE LBANN_HAS_BOOST: FALSE LBANN_HAS_ONNX: FALSE LBANN_NVPROF: FALSE == End LBANN Configuration Summary == -- Configuring done (8.4s) CMake Error at /usr/local/lib/cmake/conduit/conduit.cmake:79 (set_target_properties): The link interface of target "conduit_relay_mpi" contains: MPI::MPI_C but the target was not found. Possible reasons include: * There is a typo in the target name. * A find_package call is missing for an IMPORTED target. * An ALIAS target is missing. Call Stack (most recent call first): /usr/local/lib/cmake/conduit/ConduitConfig.cmake:81 (include) CMakeLists.txt:540 (find_package) CMake Error at /usr/local/lib/cmake/conduit/conduit.cmake:87 (set_target_properties): The link interface of target "conduit_relay_mpi_io" contains: MPI::MPI_C but the target was not found. Possible reasons include: * There is a typo in the target name. * A find_package call is missing for an IMPORTED target. * An ALIAS target is missing. Call Stack (most recent call first): /usr/local/lib/cmake/conduit/ConduitConfig.cmake:81 (include) CMakeLists.txt:540 (find_package) CMake Error at /usr/local/lib/cmake/conduit/conduit.cmake:104 (set_target_properties): The link interface of target "conduit_blueprint_mpi" contains: MPI::MPI_C but the target was not found. Possible reasons include: * There is a typo in the target name. * A find_package call is missing for an IMPORTED target. * An ALIAS target is missing. Call Stack (most recent call first): /usr/local/lib/cmake/conduit/ConduitConfig.cmake:81 (include) CMakeLists.txt:540 (find_package) -- Generating done (2.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED LBANN_WITH_CUDNN CMake Generate step failed. Build files cannot be regenerated correctly. *** Error code 1 Stop. make: stopped in /usr/ports/misc/lbann =>> Cleaning up wrkdir ===> Cleaning for lbann-0.102.254_4 build of misc/lbann | lbann-0.102.254_4 ended at Tue May 6 03:13:09 BST 2025 build time: 00:04:07 !!! build failure encountered !!!