=>> Building biology/sra-tools build started at Fri May 2 16:48:09 BST 2025 port directory: /usr/ports/biology/sra-tools package name: sra-tools-3.2.1 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2239 Mar 22 20:58 /usr/ports/biology/sra-tools/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: a57f4b8dea Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 01 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for sra-tools-3.2.1: EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/sra-tools/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/sra-tools/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/sra-tools/work/.cache HOME=/wrkdirs/usr/ports/biology/sra-tools/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/sra-tools/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/sra-tools/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/sra-tools/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/sra-tools/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/sra-tools/work/.cache HOME=/wrkdirs/usr/ports/biology/sra-tools/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/sra-tools/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/sra-tools/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/sra-tools/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTVERSION=3.2.1 PORTEXAMPLES="" CMAKE_BUILD_TYPE="release" JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/sra-tools" EXAMPLESDIR="share/examples/sra-tools" DATADIR="share/sra-tools" WWWDIR="www/sra-tools" ETCDIR="etc/sra-tools" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="17+" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/sra-tools DOCSDIR=/usr/local/share/doc/sra-tools EXAMPLESDIR=/usr/local/share/examples/sra-tools WWWDIR=/usr/local/www/sra-tools ETCDIR=/usr/local/etc/sra-tools --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> sra-tools-3.2.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> sra-tools-3.2.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of sra-tools-3.2.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by sra-tools-3.2.1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by sra-tools-3.2.1 for building => SHA256 Checksum OK for ncbi-sra-tools-3.2.1_GH0.tar.gz. => SHA256 Checksum OK for ncbi-ncbi-vdb-3.2.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by sra-tools-3.2.1 for building ===> Extracting for sra-tools-3.2.1 => SHA256 Checksum OK for ncbi-sra-tools-3.2.1_GH0.tar.gz. => SHA256 Checksum OK for ncbi-ncbi-vdb-3.2.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for sra-tools-3.2.1 ===> Applying FreeBSD patches for sra-tools-3.2.1 from /usr/ports/biology/sra-tools/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> sra-tools-3.2.1 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.2.37.pkg [pkg-builder.dan.net.uk] Installing bash-5.2.37... [pkg-builder.dan.net.uk] `-- Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] `-- Extracting gettext-runtime-0.23.1: .......... done [pkg-builder.dan.net.uk] Extracting bash-5.2.37: .......... done ===> sra-tools-3.2.1 depends on executable: bash - found ===> Returning to build of sra-tools-3.2.1 ===> sra-tools-3.2.1 depends on executable: bison - not found ===> Installing existing package /packages/All/bison-3.8.2_2,1.pkg [pkg-builder.dan.net.uk] Installing bison-3.8.2_2,1... [pkg-builder.dan.net.uk] `-- Installing libtextstyle-0.23.1... [pkg-builder.dan.net.uk] `-- Extracting libtextstyle-0.23.1: .......... done [pkg-builder.dan.net.uk] `-- Installing m4-1.4.19_1,1... [pkg-builder.dan.net.uk] | `-- Installing libsigsegv-2.14... [pkg-builder.dan.net.uk] | `-- Extracting libsigsegv-2.14: ..... done [pkg-builder.dan.net.uk] `-- Extracting m4-1.4.19_1,1: .......... done [pkg-builder.dan.net.uk] Extracting bison-3.8.2_2,1: .......... done ===== Message from libsigsegv-2.14: -- Note that the stackoverflow handling functions of this library need procfs mounted on /proc. ===> sra-tools-3.2.1 depends on executable: bison - found ===> Returning to build of sra-tools-3.2.1 ===> sra-tools-3.2.1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.6.pkg [pkg-builder.dan.net.uk] Installing cmake-core-3.31.6... [pkg-builder.dan.net.uk] `-- Installing expat-2.7.1... [pkg-builder.dan.net.uk] `-- Extracting expat-2.7.1: .......... done [pkg-builder.dan.net.uk] `-- Installing jsoncpp-1.9.6_1... [pkg-builder.dan.net.uk] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg-builder.dan.net.uk] `-- Installing libidn2-2.3.8... [pkg-builder.dan.net.uk] | `-- Installing libunistring-1.3... [pkg-builder.dan.net.uk] | `-- Extracting libunistring-1.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting libidn2-2.3.8: .......... done [pkg-builder.dan.net.uk] `-- Installing libuv-1.51.0... [pkg-builder.dan.net.uk] `-- Extracting libuv-1.51.0: .......... done [pkg-builder.dan.net.uk] `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] `-- Installing rhash-1.4.4_1... [pkg-builder.dan.net.uk] `-- Extracting rhash-1.4.4_1: .......... done [pkg-builder.dan.net.uk] Extracting cmake-core-3.31.6: .......... done ===> sra-tools-3.2.1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of sra-tools-3.2.1 ===> sra-tools-3.2.1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,4.pkg [pkg-builder.dan.net.uk] Installing ninja-1.11.1,4... [pkg-builder.dan.net.uk] `-- Installing python311-3.11.12... [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.8... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.8: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-4.0.0... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-4.0.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.13_2... [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.13_2: .......... done [pkg-builder.dan.net.uk] `-- Extracting python311-3.11.12: .......... done [pkg-builder.dan.net.uk] Extracting ninja-1.11.1,4: ..... done ===== Message from python311-3.11.12: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> sra-tools-3.2.1 depends on executable: ninja - found ===> Returning to build of sra-tools-3.2.1 ===> sra-tools-3.2.1 depends on file: /usr/local/openjdk21/bin/java - not found ===> Installing existing package /packages/All/openjdk21-21.0.7+6.1.pkg [pkg-builder.dan.net.uk] Installing openjdk21-21.0.7+6.1... [pkg-builder.dan.net.uk] `-- Installing alsa-lib-1.2.13... [pkg-builder.dan.net.uk] `-- Extracting alsa-lib-1.2.13: .......... done [pkg-builder.dan.net.uk] `-- Installing fontconfig-2.15.0_3,1... [pkg-builder.dan.net.uk] | `-- Installing freetype2-2.13.3... [pkg-builder.dan.net.uk] | `-- Extracting freetype2-2.13.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting fontconfig-2.15.0_3,1: .......... done [pkg-builder.dan.net.uk] `-- Installing giflib-5.2.2... [pkg-builder.dan.net.uk] `-- Extracting giflib-5.2.2: .......... done [pkg-builder.dan.net.uk] `-- Installing harfbuzz-10.3.0... [pkg-builder.dan.net.uk] | `-- Installing glib-2.84.1_2,2... [pkg-builder.dan.net.uk] | | `-- Installing libiconv-1.17_1... [pkg-builder.dan.net.uk] | | `-- Extracting libiconv-1.17_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libinotify-20240724_1... [pkg-builder.dan.net.uk] | | `-- Extracting libinotify-20240724_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing pcre2-10.45_1... [pkg-builder.dan.net.uk] | | `-- Extracting pcre2-10.45_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py311-packaging-24.2... [pkg-builder.dan.net.uk] | | `-- Extracting py311-packaging-24.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting glib-2.84.1_2,2: .......... done [pkg-builder.dan.net.uk] | `-- Installing graphite2-1.3.14... [pkg-builder.dan.net.uk] | `-- Extracting graphite2-1.3.14: .......... done [pkg-builder.dan.net.uk] `-- Extracting harfbuzz-10.3.0: .......... done [pkg-builder.dan.net.uk] `-- Installing javavmwrapper-2.7.10... [pkg-builder.dan.net.uk] `-- Extracting javavmwrapper-2.7.10: .......... done [pkg-builder.dan.net.uk] `-- Installing jpeg-turbo-3.1.0... [pkg-builder.dan.net.uk] `-- Extracting jpeg-turbo-3.1.0: .......... done [pkg-builder.dan.net.uk] `-- Installing lcms2-2.17... [pkg-builder.dan.net.uk] | `-- Installing tiff-4.7.0... [pkg-builder.dan.net.uk] | | `-- Installing jbigkit-2.1_3... [pkg-builder.dan.net.uk] | | `-- Extracting jbigkit-2.1_3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing lerc-4.0.0... [pkg-builder.dan.net.uk] | | `-- Extracting lerc-4.0.0: ..... done [pkg-builder.dan.net.uk] | | `-- Installing libdeflate-1.22... [pkg-builder.dan.net.uk] | | `-- Extracting libdeflate-1.22: .......... done [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.7... [pkg-builder.dan.net.uk] | | `-- Installing liblz4-1.10.0,1... [pkg-builder.dan.net.uk] | | `-- Extracting liblz4-1.10.0,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.7: .......... done [pkg-builder.dan.net.uk] | `-- Extracting tiff-4.7.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting lcms2-2.17: .......... done [pkg-builder.dan.net.uk] `-- Installing libX11-1.8.12,1... [pkg-builder.dan.net.uk] | `-- Installing libxcb-1.17.0... [pkg-builder.dan.net.uk] | | `-- Installing libXau-1.0.11... [pkg-builder.dan.net.uk] | | `-- Extracting libXau-1.0.11: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXdmcp-1.1.5... [pkg-builder.dan.net.uk] | | `-- Installing xorgproto-2024.1... [pkg-builder.dan.net.uk] | | `-- Extracting xorgproto-2024.1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg-builder.dan.net.uk] | `-- Extracting libxcb-1.17.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting libX11-1.8.12,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXext-1.3.6,1... [pkg-builder.dan.net.uk] `-- Extracting libXext-1.3.6,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXi-1.8.1,1... [pkg-builder.dan.net.uk] | `-- Installing libXfixes-6.0.1... [pkg-builder.dan.net.uk] | `-- Extracting libXfixes-6.0.1: ....... done [pkg-builder.dan.net.uk] `-- Extracting libXi-1.8.1,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXrandr-1.5.4... [pkg-builder.dan.net.uk] | `-- Installing libXrender-0.9.12... [pkg-builder.dan.net.uk] | `-- Extracting libXrender-0.9.12: ....... done [pkg-builder.dan.net.uk] `-- Extracting libXrandr-1.5.4: .......... done [pkg-builder.dan.net.uk] `-- Installing libXt-1.3.0,1... [pkg-builder.dan.net.uk] | `-- Installing libICE-1.1.1,1... [pkg-builder.dan.net.uk] | `-- Extracting libICE-1.1.1,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libSM-1.2.6,1... [pkg-builder.dan.net.uk] | `-- Extracting libSM-1.2.6,1: ........ done [pkg-builder.dan.net.uk] `-- Extracting libXt-1.3.0,1: .......... done [pkg-builder.dan.net.uk] `-- Installing libXtst-1.2.4... [pkg-builder.dan.net.uk] `-- Extracting libXtst-1.2.4: .......... done [pkg-builder.dan.net.uk] `-- Installing png-1.6.47... [pkg-builder.dan.net.uk] `-- Extracting png-1.6.47: .......... done [pkg-builder.dan.net.uk] `-- Installing xorg-fonts-truetype-7.7_1... [pkg-builder.dan.net.uk] | `-- Installing dejavu-2.37_3... [pkg-builder.dan.net.uk] | | `-- Installing mkfontscale-1.2.3... [pkg-builder.dan.net.uk] | | `-- Installing libfontenc-1.1.8... [pkg-builder.dan.net.uk] | | `-- Extracting libfontenc-1.1.8: ...... done [pkg-builder.dan.net.uk] | | `-- Extracting mkfontscale-1.2.3: .... done [pkg-builder.dan.net.uk] | `-- Extracting dejavu-2.37_3: .......... done [pkg-builder.dan.net.uk] | `-- Installing encodings-1.1.0,1... [pkg-builder.dan.net.uk] | `-- Extracting encodings-1.1.0,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing font-bh-ttf-1.0.3_5... [pkg-builder.dan.net.uk] | `-- Extracting font-bh-ttf-1.0.3_5: .......... done [pkg-builder.dan.net.uk] | `-- Installing font-misc-ethiopic-1.0.4... [pkg-builder.dan.net.uk] | `-- Extracting font-misc-ethiopic-1.0.4: ... done [pkg-builder.dan.net.uk] | `-- Installing font-misc-meltho-1.0.3_5... [pkg-builder.dan.net.uk] | `-- Extracting font-misc-meltho-1.0.3_5: .......... done [pkg-builder.dan.net.uk] Extracting openjdk21-21.0.7+6.1: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from freetype2-2.13.3: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from libinotify-20240724_1: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from dejavu-2.37_3: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from openjdk21-21.0.7+6.1: -- This OpenJDK implementation may require fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc for some applications. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> sra-tools-3.2.1 depends on file: /usr/local/openjdk21/bin/java - found ===> Returning to build of sra-tools-3.2.1 ===> sra-tools-3.2.1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> sra-tools-3.2.1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of sra-tools-3.2.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for sra-tools-3.2.1 cd /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build && cmake .. && make -- The C compiler identification is Clang 18.1.6 -- The CXX compiler identification is Clang 18.1.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at build/env.cmake:32 (cmake_policy): The OLD behavior for policy CMP0115 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. Call Stack (most recent call first): CMakeLists.txt:78 (include) VERSION=3.2.1 -- Found FLEX: /usr/bin/flex (found suitable version "2.6.4", minimum required is "2.6") -- Found BISON: /usr/local/bin/bison (found suitable version "3.8.2", minimum required is "3") -- Found Python3: /usr/local/bin/python3.11 (found version "3.11.12") found components: Interpreter -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) RUN_SANITIZER_TESTS: OFF Using local mbedtls headers from interfaces/ext/mbedtls Building local copy ext/mbedtls... -- Looking for gnu/libc-version.h -- Looking for gnu/libc-version.h - not found No mbedtls libs found installed in the system, using local copy... -- Configuring done (0.8s) -- Generating done (0.3s) -- Build files have been written to: /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build [ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/testenv.cpp.o [ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/testcase.cpp.o [ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/testrunner.cpp.o [ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/unix/systestenv.cpp.o [ 0%] Linking CXX static library ../../lib/libktst.a [ 0%] Built target ktst [ 0%] Building C object libs/align/CMakeFiles/ncbi-bam.dir/bam.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/align/bam.c:3665:30: warning: variable 'B' set but not used [-Wunused-but-set-variable] 3665 | unsigned B = i + 2; | ^ 1 warning generated. [ 0%] Linking C static library ../../ilib/libncbi-bam.a [ 0%] Built target ncbi-bam [ 0%] Building C object libs/align/CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reader-cmn.c.o [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reference-cmn.c.o [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reader-refseq.c.o [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reader-wgs.c.o [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/refseq-mgr.c.o [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-cmn.c.o [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-refseq.c.o [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-alignment.c.o [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-sequence.c.o [ 2%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-ref.c.o [ 2%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-reference.c.o [ 2%] Linking C static library ../../ilib/libalign-writer.a [ 2%] Built target align-writer [ 2%] Building C object libs/align/CMakeFiles/align-access.dir/align-access.c.o [ 2%] Linking C static library ../../ilib/libalign-access.a [ 2%] Built target align-access [ 2%] Building C object libs/align/CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o [ 2%] Building C object libs/align/CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o [ 2%] Building CXX object libs/align/CMakeFiles/sam-extract.dir/samextract-lib.cpp.o [ 2%] Building CXX object libs/align/CMakeFiles/sam-extract.dir/samextract-bam.cpp.o [ 3%] Building C object libs/align/CMakeFiles/sam-extract.dir/samextract-pool.c.o [ 3%] Linking CXX static library ../../lib/libsam-extract.a [ 3%] Built target sam-extract [ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/align_mgr.c.o [ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/al_iterator.c.o [ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o [ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/ref_iterator.c.o [ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/pl_iterator.c.o [ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/reference-cmn.c.o [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/reader-cmn.c.o [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/reader-refseq.c.o [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/reader-wgs.c.o [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/reference.c.o [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/refseq-mgr.c.o [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/quality-quantizer.c.o [ 4%] Linking C static library ../../ilib/libalign-reader.a [ 4%] Built target align-reader [ 4%] Building C object libs/axf/CMakeFiles/axf.dir/ref-tbl-sub-select.c.o [ 4%] Building C object libs/axf/CMakeFiles/axf.dir/ref-restore-read.c.o [ 4%] Building C object libs/axf/CMakeFiles/axf.dir/align-restore-read.c.o [ 4%] Building C object libs/axf/CMakeFiles/axf.dir/raw-restore-read.c.o [ 4%] Building C object libs/axf/CMakeFiles/axf.dir/raw-restore-qual.c.o [ 4%] Building C object libs/axf/CMakeFiles/axf.dir/seq-restore-read.c.o [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/seq-restore-linkage-group.c.o [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/seq-construct-read.c.o [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/cigar.c.o [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/project_read_from_sequence.c.o [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/not-my-row.c.o [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/template-len.c.o [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/get-sam-flags.c.o [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/align-ref-pos.c.o [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/align-ref-name.c.o [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/align-ref-seq-id.c.o [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/align-local_ref_id.c.o [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/align-local_ref_start.c.o [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/generate-mismatch-qual.c.o [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/mismatch-restore-qual.c.o [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/ref-preserve_qual.c.o [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/ref-tbl.c.o [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/make-cmp-read_desc.c.o [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/get_mate_align_ids.c.o [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/range-list.c.o [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/refseq.c.o [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/wgs.c.o [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/restore-read.c.o [ 7%] Linking C static library ../../ilib/libaxf.a [ 7%] Built target axf [ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o [ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-restore-read.c.o [ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/align-restore-read.c.o [ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/raw-restore-read.c.o [ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/raw-restore-qual.c.o [ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/seq-restore-read.c.o [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/seq-restore-linkage-group.c.o [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/seq-construct-read.c.o [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/cigar.c.o [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/project_read_from_sequence.c.o [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/not-my-row.c.o [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/template-len.c.o [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/get-sam-flags.c.o [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/align-ref-pos.c.o [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/align-ref-name.c.o [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/align-ref-seq-id.c.o [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/align-local_ref_id.c.o [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/align-local_ref_start.c.o [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/generate-mismatch-qual.c.o [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/mismatch-restore-qual.c.o [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-preserve_qual.c.o [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-tbl.c.o [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/make-cmp-read_desc.c.o [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/get_mate_align_ids.c.o [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/range-list.c.o [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/refseq.c.o [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/wgs.c.o [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/restore-read.c.o [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/refseq-stats.c.o [ 10%] Linking C static library ../../ilib/libwaxf.a [ 10%] Built target waxf [ 11%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/blast-mgr.c.o [ 11%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/reader.c.o [ 11%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/reference.c.o [ 11%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/run-set.c.o [ 11%] Linking C static library ../../ilib/libvdb-blast.a [ 11%] Built target vdb-blast [ 11%] Building C object libs/cloud/CMakeFiles/cloud.dir/aws-auth.c.o [ 11%] Building C object libs/cloud/CMakeFiles/cloud.dir/aws.c.o [ 11%] Building C object libs/cloud/CMakeFiles/cloud.dir/cloud-cmn.c.o [ 11%] Building C object libs/cloud/CMakeFiles/cloud.dir/cloud-mgr.c.o [ 12%] Building C object libs/cloud/CMakeFiles/cloud.dir/cloud.c.o [ 12%] Building C object libs/cloud/CMakeFiles/cloud.dir/gcp-authentication.c.o [ 12%] Building C object libs/cloud/CMakeFiles/cloud.dir/gcp.c.o [ 12%] Linking C static library ../../ilib/libcloud.a [ 12%] Built target cloud [ 12%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/blocksort.c.o [ 12%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/huffman.c.o [ 12%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/crctable.c.o [ 13%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/randtable.c.o [ 13%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/compress.c.o [ 13%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/decompress.c.o [ 13%] Building C object libs/ext/bzip2/CMakeFiles/bz2.dir/bzlib.c.o [ 13%] Linking C static library ../../../ilib/libbz2.a [ 13%] Built target bz2 [ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/aes.c.o [ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/aesni.c.o [ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/aria.c.o [ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/asn1parse.c.o [ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/asn1write.c.o [ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/base64.c.o [ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/bignum.c.o [ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/camellia.c.o [ 14%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ccm.c.o [ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/chacha20.c.o [ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/chachapoly.c.o [ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/cipher.c.o [ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/cipher_wrap.c.o [ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/cmac.c.o [ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/constant_time.c.o [ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ctr_drbg.c.o [ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/des.c.o [ 15%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/dhm.c.o [ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecdh.c.o [ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecdsa.c.o [ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecjpake.c.o [ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecp.c.o [ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecp_curves.c.o [ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/entropy.c.o [ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/entropy_poll.c.o [ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/error.c.o [ 16%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/gcm.c.o [ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/hmac_drbg.c.o [ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/md.c.o [ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/md5.c.o [ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/nist_kw.c.o [ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/oid.c.o [ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/padlock.c.o [ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pem.c.o [ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pk.c.o [ 17%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pk_wrap.c.o [ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pkcs12.c.o [ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pkcs5.c.o [ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pkparse.c.o [ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/pkwrite.c.o [ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/platform.c.o [ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/platform_util.c.o [ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/poly1305.c.o [ 18%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto.c.o [ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_client.c.o [ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_driver_wrappers.c.o [ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_slot_management.c.o [ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_storage.c.o [ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_its_file.c.o [ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_rsa.c.o [ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_mac.c.o [ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_ecp.c.o [ 19%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_hash.c.o [ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_cipher.c.o [ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_aead.c.o [ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/psa_crypto_se.c.o [ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ripemd160.c.o [ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/rsa.c.o [ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/rsa_alt_helpers.c.o [ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/sha1.c.o [ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/sha256.c.o [ 20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/sha512.c.o [ 21%] Linking C static library ../../../ilib/libmbedcrypto.a [ 21%] Built target mbedcrypto [ 21%] Building C object libs/ext/mbedtls/CMakeFiles/mbedx509.dir/x509_crt.c.o [ 21%] Building C object libs/ext/mbedtls/CMakeFiles/mbedx509.dir/x509.c.o [ 21%] Linking C static library ../../../ilib/libmbedx509.a [ 21%] Built target mbedx509 [ 21%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/debug.c.o [ 21%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_ciphersuites.c.o [ 21%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_client.c.o [ 21%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_msg.c.o [ 21%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls.c.o [ 21%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls12_client.c.o [ 21%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls12_server.c.o [ 21%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls13_keys.c.o [ 22%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_debug_helpers_generated.c.o [ 22%] Linking C static library ../../../ilib/libmbedtls.a [ 22%] Built target mbedtls [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/adler32.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/adler32.c:63:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 63 | uLong ZEXPORT adler32_z(adler, buf, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/adler32.c:134:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 134 | uLong ZEXPORT adler32(adler, buf, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/adler32.c:143:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 143 | local uLong adler32_combine_(adler1, adler2, len2) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/adler32.c:172:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 172 | uLong ZEXPORT adler32_combine(adler1, adler2, len2) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/adler32.c:180:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 180 | uLong ZEXPORT adler32_combine64(adler1, adler2, len2) | ^ 5 warnings generated. [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/compress.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/compress.c:22:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 22 | int ZEXPORT compress2(dest, destLen, source, sourceLen, level) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/compress.c:68:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 68 | int ZEXPORT compress(dest, destLen, source, sourceLen) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/compress.c:81:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 81 | uLong ZEXPORT compressBound(sourceLen) | ^ 3 warnings generated. [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/crc32.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/crc32.c:126:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 126 | local z_word_t byte_swap(word) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/crc32.c:551:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 551 | local z_crc_t multmodp(a, b) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/crc32.c:575:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 575 | local z_crc_t x2nmodp(n, k) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/crc32.c:726:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 726 | local z_crc_t crc_word(data) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/crc32.c:735:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 735 | local z_word_t crc_word_big(data) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/crc32.c:748:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 748 | unsigned long ZEXPORT crc32_z(crc, buf, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/crc32.c:1072:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1072 | unsigned long ZEXPORT crc32(crc, buf, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/crc32.c:1081:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1081 | uLong ZEXPORT crc32_combine64(crc1, crc2, len2) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/crc32.c:1093:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1093 | uLong ZEXPORT crc32_combine(crc1, crc2, len2) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/crc32.c:1102:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1102 | uLong ZEXPORT crc32_combine_gen64(len2) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/crc32.c:1112:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1112 | uLong ZEXPORT crc32_combine_gen(len2) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/crc32.c:1119:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1119 | uLong ZEXPORT crc32_combine_op(crc1, crc2, op) | ^ 12 warnings generated. [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/deflate.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:198:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 198 | local void slide_hash(s) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:225:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 225 | int ZEXPORT deflateInit_(strm, level, version, stream_size) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:237:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 237 | int ZEXPORT deflateInit2_(strm, level, method, windowBits, memLevel, strategy, | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:389:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 389 | local int deflateStateCheck(strm) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:412:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 412 | int ZEXPORT deflateSetDictionary(strm, dictionary, dictLength) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:481:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 481 | int ZEXPORT deflateGetDictionary(strm, dictionary, dictLength) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:503:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 503 | int ZEXPORT deflateResetKeep(strm) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:541:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 541 | int ZEXPORT deflateReset(strm) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:553:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 553 | int ZEXPORT deflateSetHeader(strm, head) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:564:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 564 | int ZEXPORT deflatePending(strm, pending, bits) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:578:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 578 | int ZEXPORT deflatePrime(strm, bits, value) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:605:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 605 | int ZEXPORT deflateParams(strm, level, strategy) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:654:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 654 | int ZEXPORT deflateTune(strm, good_length, max_lazy, nice_length, max_chain) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:696:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 696 | uLong ZEXPORT deflateBound(strm, sourceLen) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:768:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 768 | local void putShortMSB(s, b) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:782:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 782 | local void flush_pending(strm) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:815:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 815 | int ZEXPORT deflate(strm, flush) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:1130:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1130 | int ZEXPORT deflateEnd(strm) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:1156:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1156 | int ZEXPORT deflateCopy(dest, source) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:1215:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1215 | local unsigned read_buf(strm, buf, size) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:1245:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1245 | local void lm_init(s) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:1278:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1278 | local uInt longest_match(s, cur_match) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:1527:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1527 | local void fill_window(s) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:1690:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1690 | local block_state deflate_stored(s, flush) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:1877:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1877 | local block_state deflate_fast(s, flush) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:1979:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1979 | local block_state deflate_slow(s, flush) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:2110:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 2110 | local block_state deflate_rle(s, flush) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/deflate.c:2184:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 2184 | local block_state deflate_huff(s, flush) | ^ 28 warnings generated. [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/gzclose.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzclose.c:11:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 11 | int ZEXPORT gzclose(file) | ^ 1 warning generated. [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/gzlib.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:75:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 75 | local void gz_reset(state) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:93:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 93 | local gzFile gz_open(path, fd, mode) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:272:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 272 | gzFile ZEXPORT gzopen(path, mode) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:280:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 280 | gzFile ZEXPORT gzopen64(path, mode) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:288:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 288 | gzFile ZEXPORT gzdopen(fd, mode) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:318:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 318 | int ZEXPORT gzbuffer(file, size) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:345:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 345 | int ZEXPORT gzrewind(file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:368:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 368 | z_off64_t ZEXPORT gzseek64(file, offset, whence) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:445:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 445 | z_off_t ZEXPORT gzseek(file, offset, whence) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:457:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 457 | z_off64_t ZEXPORT gztell64(file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:474:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 474 | z_off_t ZEXPORT gztell(file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:484:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 484 | z_off64_t ZEXPORT gzoffset64(file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:507:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 507 | z_off_t ZEXPORT gzoffset(file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:517:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 517 | int ZEXPORT gzeof(file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:534:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 534 | const char * ZEXPORT gzerror(file, errnum) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:555:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 555 | void ZEXPORT gzclearerr(file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzlib.c:581:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 581 | void ZLIB_INTERNAL gz_error(state, err, msg) | ^ 17 warnings generated. [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/gzread.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:21:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 21 | local int gz_load(state, buf, len, have) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:56:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 56 | local int gz_avail(state) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:91:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 91 | local int gz_look(state) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:173:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 173 | local int gz_decomp(state) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:227:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 227 | local int gz_fetch(state) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:257:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 257 | local int gz_skip(state, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:292:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 292 | local z_size_t gz_read(state, buf, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:373:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 373 | int ZEXPORT gzread(file, buf, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:409:18: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 409 | z_size_t ZEXPORT gzfread(buf, size, nitems, file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:445:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 445 | int ZEXPORT gzgetc(file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:472:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 472 | int ZEXPORT gzgetc_(file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:479:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 479 | int ZEXPORT gzungetc(c, file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:539:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 539 | char * ZEXPORT gzgets(file, buf, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:603:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 603 | int ZEXPORT gzdirect(file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzread.c:623:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 623 | int ZEXPORT gzclose_r(file) | ^ 15 warnings generated. [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/gzwrite.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzwrite.c:17:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 17 | local int gz_init(state) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzwrite.c:73:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 73 | local int gz_comp(state, flush) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzwrite.c:154:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 154 | local int gz_zero(state, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzwrite.c:187:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 187 | local z_size_t gz_write(state, buf, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzwrite.c:255:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 255 | int ZEXPORT gzwrite(file, buf, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzwrite.c:283:18: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 283 | z_size_t ZEXPORT gzfwrite(buf, size, nitems, file) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzwrite.c:313:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 313 | int ZEXPORT gzputc(file, c) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzwrite.c:361:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 361 | int ZEXPORT gzputs(file, s) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzwrite.c:565:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 565 | int ZEXPORT gzflush(file, flush) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzwrite.c:597:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 597 | int ZEXPORT gzsetparams(file, level, strategy) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/gzwrite.c:639:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 639 | int ZEXPORT gzclose_w(file) | ^ 11 warnings generated. [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/infback.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/infback.c:28:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 28 | int ZEXPORT inflateBackInit_(strm, windowBits, window, version, stream_size) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/infback.c:83:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 83 | local void fixedtables(state) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/infback.c:251:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 251 | int ZEXPORT inflateBack(strm, in, in_desc, out, out_desc) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/infback.c:635:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 635 | int ZEXPORT inflateBackEnd(strm) | ^ 4 warnings generated. [ 24%] Building C object libs/ext/zlib/CMakeFiles/z.dir/inffast.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inffast.c:50:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 50 | void ZLIB_INTERNAL inflate_fast(strm, start) | ^ 1 warning generated. [ 24%] Building C object libs/ext/zlib/CMakeFiles/z.dir/inflate.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:105:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 105 | local int inflateStateCheck(strm) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:119:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 119 | int ZEXPORT inflateResetKeep(strm) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:145:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 145 | int ZEXPORT inflateReset(strm) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:158:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 158 | int ZEXPORT inflateReset2(strm, windowBits) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:198:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 198 | int ZEXPORT inflateInit2_(strm, windowBits, version, stream_size) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:242:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 242 | int ZEXPORT inflateInit_(strm, version, stream_size) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:250:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 250 | int ZEXPORT inflatePrime(strm, bits, value) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:281:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 281 | local void fixedtables(state) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:399:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 399 | local int updatewindow(strm, end, copy) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:625:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 625 | int ZEXPORT inflate(strm, flush) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:1304:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1304 | int ZEXPORT inflateEnd(strm) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:1318:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1318 | int ZEXPORT inflateGetDictionary(strm, dictionary, dictLength) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:1341:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1341 | int ZEXPORT inflateSetDictionary(strm, dictionary, dictLength) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:1376:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1376 | int ZEXPORT inflateGetHeader(strm, head) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:1404:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1404 | local unsigned syncsearch(have, buf, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:1427:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1427 | int ZEXPORT inflateSync(strm) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:1485:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1485 | int ZEXPORT inflateSyncPoint(strm) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:1495:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1495 | int ZEXPORT inflateCopy(dest, source) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:1542:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1542 | int ZEXPORT inflateUndermine(strm, subvert) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:1560:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1560 | int ZEXPORT inflateValidate(strm, check) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:1575:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1575 | long ZEXPORT inflateMark(strm) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inflate.c:1588:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1588 | unsigned long ZEXPORT inflateCodesUsed(strm) | ^ 22 warnings generated. [ 24%] Building C object libs/ext/zlib/CMakeFiles/z.dir/inftrees.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/inftrees.c:32:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 32 | int ZLIB_INTERNAL inflate_table(type, lens, codes, table, bits, work) | ^ 1 warning generated. [ 24%] Building C object libs/ext/zlib/CMakeFiles/z.dir/trees.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:379:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 379 | void ZLIB_INTERNAL _tr_init(s) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:407:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 407 | local void init_block(s) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:451:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 451 | local void pqdownheap(s, tree, k) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:486:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 486 | local void gen_bitlen(s, desc) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:572:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 572 | local void gen_codes(tree, max_code, bl_count) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:615:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 615 | local void build_tree(s, desc) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:703:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 703 | local void scan_tree(s, tree, max_code) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:748:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 748 | local void send_tree(s, tree, max_code) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:799:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 799 | local int build_bl_tree(s) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:834:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 834 | local void send_all_trees(s, lcodes, dcodes, blcodes) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:863:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 863 | void ZLIB_INTERNAL _tr_stored_block(s, buf, stored_len, last) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:887:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 887 | void ZLIB_INTERNAL _tr_flush_bits(s) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:897:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 897 | void ZLIB_INTERNAL _tr_align(s) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:912:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 912 | void ZLIB_INTERNAL _tr_flush_block(s, buf, stored_len, last) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:1014:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1014 | int ZLIB_INTERNAL _tr_tally(s, dist, lc) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:1042:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1042 | local void compress_block(s, ltree, dtree) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:1102:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1102 | local int detect_data_type(s) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:1136:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1136 | local unsigned bi_reverse(code, len) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:1151:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1151 | local void bi_flush(s) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/trees.c:1168:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1168 | local void bi_windup(s) | ^ 20 warnings generated. [ 24%] Building C object libs/ext/zlib/CMakeFiles/z.dir/uncompr.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/uncompr.c:27:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 27 | int ZEXPORT uncompress2(dest, destLen, source, sourceLen) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/uncompr.c:86:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 86 | int ZEXPORT uncompress(dest, destLen, source, sourceLen) | ^ 2 warnings generated. [ 24%] Building C object libs/ext/zlib/CMakeFiles/z.dir/zutil.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/zutil.c:135:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 135 | const char * ZEXPORT zError(err) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/zutil.c:307:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 307 | voidpf ZLIB_INTERNAL zcalloc(opaque, items, size) | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zlib/zutil.c:317:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 317 | void ZLIB_INTERNAL zcfree(opaque, ptr) | ^ 3 warnings generated. [ 24%] Linking C static library ../../../ilib/libz.a [ 24%] Built target z [ 24%] Building C object libs/ext/zstd/CMakeFiles/zstd.dir/zstd.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/ext/zstd/zstd.c:13556:12: warning: variable 'litLengthSum' set but not used [-Wunused-but-set-variable] 13556 | size_t litLengthSum = 0; | ^ 1 warning generated. [ 25%] Linking C static library ../../../ilib/libzstd.a [ 25%] Built target zstd [ 25%] Building C object libs/kapp/CMakeFiles/kapp.dir/main.c.o [ 25%] Building C object libs/kapp/CMakeFiles/kapp.dir/args.c.o [ 25%] Building C object libs/kapp/CMakeFiles/kapp.dir/args-conv.c.o [ 25%] Building C object libs/kapp/CMakeFiles/kapp.dir/tokenizer.c.o [ 26%] Building C object libs/kapp/CMakeFiles/kapp.dir/log-xml.c.o [ 26%] Building C object libs/kapp/CMakeFiles/kapp.dir/unix/args-conv-os.c.o [ 26%] Building C object libs/kapp/CMakeFiles/kapp.dir/unix/sysmain.c.o [ 26%] Building C object libs/kapp/CMakeFiles/kapp.dir/mac/ram.c.o [ 26%] Linking C static library ../../lib/libkapp.a [ 26%] Built target kapp [ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/main.c.o [ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/args.c.o [ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/args-conv.c.o [ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/tokenizer.c.o [ 27%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/log-xml.c.o [ 27%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o [ 27%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o [ 27%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/mac/ram.c.o [ 27%] Linking C static library ../../ilib/libkapp-norsrc.a [ 27%] Built target kapp-norsrc [ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/btree.c.o [ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/kdb-cmn.c.o [ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/rkdb.c.o [ 27%] Building C object libs/kdb/CMakeFiles/kdb.dir/wkdb.c.o [ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/dbmgr-cmn.c.o [ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/manager-base.c.o [ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/database-base.c.o [ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/table-base.c.o [ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/column-base.c.o [ 28%] Building CXX object libs/kdb/CMakeFiles/kdb.dir/columnblob-base.cpp.o [ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/meta-base.c.o [ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/metanode-base.c.o [ 28%] Building C object libs/kdb/CMakeFiles/kdb.dir/index-base.c.o [ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/ptrieval-v1.c.o [ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/ptrieval-v2.c.o [ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/idstats.c.o [ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/database-cc.c.o [ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/table-cc.c.o [ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/column-cc.c.o [ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/dbcc-cmn.c.o [ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/trieval-v1.c.o [ 29%] Building C object libs/kdb/CMakeFiles/kdb.dir/trieval-v2.c.o [ 30%] Building C object libs/kdb/CMakeFiles/kdb.dir/index-cmn.c.o [ 30%] Building C object libs/kdb/CMakeFiles/kdb.dir/rindex.c.o [ 30%] Building C object libs/kdb/CMakeFiles/kdb.dir/ridxblk.c.o [ 30%] Building C object libs/kdb/CMakeFiles/kdb.dir/rtrieidx-v1.c.o [ 30%] Building C object libs/kdb/CMakeFiles/kdb.dir/rtrieidx-v2.c.o [ 30%] Building C object libs/kdb/CMakeFiles/kdb.dir/ru64idx-v3.c.o [ 30%] Building C object libs/kdb/CMakeFiles/kdb.dir/windex.c.o [ 30%] Building C object libs/kdb/CMakeFiles/kdb.dir/widxblk.c.o [ 31%] Building C object libs/kdb/CMakeFiles/kdb.dir/wtrieidx-v1.c.o [ 31%] Building C object libs/kdb/CMakeFiles/kdb.dir/wtrieidx-v2.c.o [ 31%] Building C object libs/kdb/CMakeFiles/kdb.dir/wu64idx-v3.c.o [ 31%] Building C object libs/kdb/CMakeFiles/kdb.dir/rcolumn.c.o [ 31%] Building CXX object libs/kdb/CMakeFiles/kdb.dir/RColumnBlob.cpp.o [ 31%] Building C object libs/kdb/CMakeFiles/kdb.dir/wcolumn.c.o [ 31%] Building CXX object libs/kdb/CMakeFiles/kdb.dir/WColumnBlob.cpp.o [ 31%] Building C object libs/kdb/CMakeFiles/kdb.dir/rmeta.c.o [ 31%] Building C object libs/kdb/CMakeFiles/kdb.dir/rmetadatanode.c.o [ 32%] Building C object libs/kdb/CMakeFiles/kdb.dir/wmeta.c.o [ 32%] Building C object libs/kdb/CMakeFiles/kdb.dir/wmetadatanode.c.o [ 32%] Building C object libs/kdb/CMakeFiles/kdb.dir/coldata.c.o [ 32%] Building C object libs/kdb/CMakeFiles/kdb.dir/rcoldata.c.o [ 32%] Building C object libs/kdb/CMakeFiles/kdb.dir/rcolidx.c.o [ 32%] Building C object libs/kdb/CMakeFiles/kdb.dir/rcolidx0.c.o [ 32%] Building C object libs/kdb/CMakeFiles/kdb.dir/rcolidx1.c.o [ 32%] Building C object libs/kdb/CMakeFiles/kdb.dir/rcolidx2.c.o [ 32%] Building C object libs/kdb/CMakeFiles/kdb.dir/wcoldata.c.o [ 33%] Building C object libs/kdb/CMakeFiles/kdb.dir/wcolidx.c.o [ 33%] Building C object libs/kdb/CMakeFiles/kdb.dir/wcolidx0.c.o [ 33%] Building C object libs/kdb/CMakeFiles/kdb.dir/wcolidx1.c.o [ 33%] Building C object libs/kdb/CMakeFiles/kdb.dir/wcolidx2.c.o [ 33%] Building C object libs/kdb/CMakeFiles/kdb.dir/rdbmgr.c.o [ 33%] Building C object libs/kdb/CMakeFiles/kdb.dir/rtable.c.o [ 33%] Building C object libs/kdb/CMakeFiles/kdb.dir/rdatabase.c.o [ 33%] Building C object libs/kdb/CMakeFiles/kdb.dir/wdbmgr.c.o [ 33%] Building C object libs/kdb/CMakeFiles/kdb.dir/wdatabase.c.o [ 34%] Building C object libs/kdb/CMakeFiles/kdb.dir/wtable.c.o [ 34%] Building C object libs/kdb/CMakeFiles/kdb.dir/page-map.c.o [ 34%] Linking CXX static library ../../ilib/libkdb.a [ 34%] Built target kdb [ 34%] Building CXX object libs/kdbtext/CMakeFiles/kdbtext.dir/api-manager.cpp.o [ 34%] Building CXX object libs/kdbtext/CMakeFiles/kdbtext.dir/manager.cpp.o [ 34%] Building CXX object libs/kdbtext/CMakeFiles/kdbtext.dir/database.cpp.o [ 34%] Building CXX object libs/kdbtext/CMakeFiles/kdbtext.dir/table.cpp.o [ 34%] Building CXX object libs/kdbtext/CMakeFiles/kdbtext.dir/column.cpp.o [ 34%] Building CXX object libs/kdbtext/CMakeFiles/kdbtext.dir/index.cpp.o In file included from /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/kdbtext/index.cpp:27: /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/kdbtext/index.hpp:84:23: warning: private field 'm_parent' is not used [-Wunused-private-field] 84 | const Table * m_parent = nullptr; | ^ 1 warning generated. [ 35%] Building CXX object libs/kdbtext/CMakeFiles/kdbtext.dir/path.cpp.o [ 35%] Building CXX object libs/kdbtext/CMakeFiles/kdbtext.dir/metadata.cpp.o [ 35%] Building CXX object libs/kdbtext/CMakeFiles/kdbtext.dir/columnblob.cpp.o [ 35%] Building CXX object libs/kdbtext/CMakeFiles/kdbtext.dir/metanode.cpp.o [ 35%] Linking CXX static library ../../ilib/libkdbtext.a [ 35%] Built target kdbtext [ 35%] Building C object libs/kfc/CMakeFiles/kfc.dir/except.c.o [ 35%] Building C object libs/kfc/CMakeFiles/kfc.dir/refcount.c.o [ 35%] Building C object libs/kfc/CMakeFiles/kfc.dir/rsrc.c.o [ 35%] Building C object libs/kfc/CMakeFiles/kfc.dir/tstate.c.o [ 36%] Building C object libs/kfc/CMakeFiles/kfc.dir/vtbl.c.o [ 36%] Building C object libs/kfc/CMakeFiles/kfc.dir/xc.c.o [ 36%] Building C object libs/kfc/CMakeFiles/kfc.dir/unix/sysctx.c.o [ 36%] Building C object libs/kfc/CMakeFiles/kfc.dir/unix/sysrsrc.c.o [ 36%] Linking C static library ../../ilib/libkfc.a [ 36%] Built target kfc [ 36%] Building C object libs/kfg/CMakeFiles/kfg.dir/zz_config-grammar.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/kfg/zz_config-grammar.c:1116:9: warning: variable 'KFG_nerrs' set but not used [-Wunused-but-set-variable] 1116 | int yynerrs; | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/kfg/zz_config-grammar.c:71:25: note: expanded from macro 'yynerrs' 71 | #define yynerrs KFG_nerrs | ^ 1 warning generated. [ 37%] Building C object libs/kfg/CMakeFiles/kfg.dir/zz_config-lex.c.o [ 37%] Building C object libs/kfg/CMakeFiles/kfg.dir/config-aws.c.o [ 37%] Building C object libs/kfg/CMakeFiles/kfg.dir/config.c.o [ 37%] Building C object libs/kfg/CMakeFiles/kfg.dir/docker.c.o [ 37%] Building C object libs/kfg/CMakeFiles/kfg.dir/kart.c.o [ 37%] Building C object libs/kfg/CMakeFiles/kfg.dir/keystore.c.o [ 37%] Building C object libs/kfg/CMakeFiles/kfg.dir/ngc.c.o [ 37%] Building C object libs/kfg/CMakeFiles/kfg.dir/properties.c.o [ 37%] Building C object libs/kfg/CMakeFiles/kfg.dir/report-kfg.c.o [ 38%] Building C object libs/kfg/CMakeFiles/kfg.dir/repository.c.o [ 38%] Linking C static library ../../ilib/libkfg.a [ 38%] Built target kfg [ 39%] Building C object libs/kfs/CMakeFiles/kfs-nommap.dir/directory.c.o [ 39%] Linking C static library ../../ilib/libkfs-nommap.a [ 39%] Built target kfs-nommap [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/directory.c.o [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/arrayfile.c.o [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/file.c.o [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/chunk-reader.c.o [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/gzip.c.o [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/bzip.c.o [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/md5.c.o [ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/crc32.c.o [ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/arc.c.o [ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/toc.c.o [ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/tocentry.c.o [ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/tocdir.c.o [ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/tocfile.c.o [ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/sra.c.o [ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/tar.c.o [ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/teefile.c.o [ 41%] Building C object libs/kfs/CMakeFiles/kfs.dir/buffile.c.o [ 41%] Building C object libs/kfs/CMakeFiles/kfs.dir/buffile-read.c.o [ 41%] Building C object libs/kfs/CMakeFiles/kfs.dir/buffile-write.c.o [ 41%] Building C object libs/kfs/CMakeFiles/kfs.dir/subfile.c.o [ 41%] Building C object libs/kfs/CMakeFiles/kfs.dir/nullfile.c.o [ 41%] Building C object libs/kfs/CMakeFiles/kfs.dir/countfile.c.o [ 41%] Building C object libs/kfs/CMakeFiles/kfs.dir/dir_test.c.o [ 41%] Building C object libs/kfs/CMakeFiles/kfs.dir/pagefile.c.o [ 41%] Building C object libs/kfs/CMakeFiles/kfs.dir/pmem.c.o [ 42%] Building C object libs/kfs/CMakeFiles/kfs.dir/readheadfile.c.o [ 42%] Building C object libs/kfs/CMakeFiles/kfs.dir/ramfile.c.o [ 42%] Building C object libs/kfs/CMakeFiles/kfs.dir/extendable-ramfile.c.o [ 42%] Building C object libs/kfs/CMakeFiles/kfs.dir/quickmount.c.o [ 42%] Building C object libs/kfs/CMakeFiles/kfs.dir/report.c.o [ 42%] Building C object libs/kfs/CMakeFiles/kfs.dir/lockfile.c.o [ 42%] Building C object libs/kfs/CMakeFiles/kfs.dir/remove-file-task.c.o [ 42%] Building C object libs/kfs/CMakeFiles/kfs.dir/cacheteefile.c.o [ 43%] Building C object libs/kfs/CMakeFiles/kfs.dir/cacheteefile2.c.o [ 43%] Building C object libs/kfs/CMakeFiles/kfs.dir/cacheteefile3.c.o [ 43%] Building C object libs/kfs/CMakeFiles/kfs.dir/rrcachedfile.c.o [ 43%] Building C object libs/kfs/CMakeFiles/kfs.dir/recorder.c.o [ 43%] Building C object libs/kfs/CMakeFiles/kfs.dir/logfile.c.o [ 43%] Building C object libs/kfs/CMakeFiles/kfs.dir/callback_file.c.o [ 43%] Building C object libs/kfs/CMakeFiles/kfs.dir/poolpages.c.o [ 43%] Building C object libs/kfs/CMakeFiles/kfs.dir/lru_cache.c.o [ 43%] Building C object libs/kfs/CMakeFiles/kfs.dir/from_to_namelist.c.o [ 44%] Building C object libs/kfs/CMakeFiles/kfs.dir/limitfile.c.o [ 44%] Building C object libs/kfs/CMakeFiles/kfs.dir/appendfile.c.o [ 44%] Building C object libs/kfs/CMakeFiles/kfs.dir/mmap.c.o [ 44%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysdir.c.o [ 44%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysdll.c.o [ 44%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysfile.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/kfs/unix/sysfile.c:80:9: warning: 'POLLRDHUP' macro redefined [-Wmacro-redefined] 80 | #define POLLRDHUP 0 | ^ /usr/include/poll.h:72:9: note: previous definition is here 72 | #define POLLRDHUP 0x4000 /* half shut down */ | ^ 1 warning generated. [ 44%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/syslockfile.c.o [ 44%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysmmap.c.o [ 44%] Linking C static library ../../ilib/libkfs.a [ 44%] Built target kfs [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/all-vdb-version.c.o [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/base64.c.o [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/bsearch.c.o [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/bstpersist.c.o [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/btree.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/klib/btree.c:441:35: warning: result of comparison of constant 32768 with expression of type 'int16_t' (aka 'short') is always true [-Wtautological-constant-out-of-range-compare] 441 | assert ( hdr -> key_bytes < PGSIZE ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/assert.h:55:21: note: expanded from macro 'assert' 55 | #define assert(e) ((e) ? (void)0 : __assert(__func__, __FILE__, \ | ^ 1 warning generated. [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/container.c.o [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/cp1252.c.o [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/crc32.c.o [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/data-buffer.c.o [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/guid.c.o [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/hashfile.c.o [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/hashtable.c.o [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/iso8859-1.c.o [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/iso8859.c.o [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/zz_json-grammar.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/klib/zz_json-grammar.c:1342:9: warning: variable 'Json_nerrs' set but not used [-Wunused-but-set-variable] 1342 | int yynerrs; | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/klib/zz_json-grammar.c:71:25: note: expanded from macro 'yynerrs' 71 | #define yynerrs Json_nerrs | ^ 1 warning generated. [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/zz_json-lex.c.o [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/json.c.o [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/judy-vector.c.o [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/ksort.c.o [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/log.c.o [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/md5.c.o [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/namelist.c.o [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/num-gen.c.o [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/out.c.o [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/pack.c.o [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/pbstree-impl.c.o [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/pbstree-swapped.c.o [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/pbstree.c.o [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/printf.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/klib/printf.c:1433:25: warning: variable 'numeric' set but not used [-Wunused-but-set-variable] 1433 | bool alternate, numeric; | ^ 1 warning generated. [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/progressbar.c.o [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/ptpersist.c.o [ 48%] Building C object libs/klib/CMakeFiles/klib.dir/ptrie.c.o [ 48%] Building C object libs/klib/CMakeFiles/klib.dir/qsort.c.o [ 48%] Building C object libs/klib/CMakeFiles/klib.dir/rc-idx-tbl.c.o [ 48%] Building C object libs/klib/CMakeFiles/klib.dir/rc-tbl.c.o [ 48%] Building C object libs/klib/CMakeFiles/klib.dir/refcount.c.o [ 48%] Building C object libs/klib/CMakeFiles/klib.dir/report-klib.c.o [ 48%] Building C object libs/klib/CMakeFiles/klib.dir/SHA-32bit.c.o [ 48%] Building C object libs/klib/CMakeFiles/klib.dir/SHA-64bit.c.o [ 48%] Building C object libs/klib/CMakeFiles/klib.dir/sra-release-version.c.o [ 49%] Building C object libs/klib/CMakeFiles/klib.dir/status-rc-strings.c.o [ 49%] Building C object libs/klib/CMakeFiles/klib.dir/status-rc.c.o [ 49%] Building C object libs/klib/CMakeFiles/klib.dir/status.c.o [ 49%] Building C object libs/klib/CMakeFiles/klib.dir/symtab.c.o [ 49%] Building C object libs/klib/CMakeFiles/klib.dir/text.c.o [ 49%] Building C object libs/klib/CMakeFiles/klib.dir/time.c.o [ 49%] Building C object libs/klib/CMakeFiles/klib.dir/token.c.o [ 49%] Building C object libs/klib/CMakeFiles/klib.dir/trie.c.o [ 49%] Building C object libs/klib/CMakeFiles/klib.dir/unpack.c.o [ 50%] Building C object libs/klib/CMakeFiles/klib.dir/utf8.c.o [ 50%] Building C object libs/klib/CMakeFiles/klib.dir/vector.c.o [ 50%] Building C object libs/klib/CMakeFiles/klib.dir/vector_namelist.c.o [ 50%] Building C object libs/klib/CMakeFiles/klib.dir/vlen-encode.c.o [ 50%] Building C object libs/klib/CMakeFiles/klib.dir/writer.c.o [ 50%] Building C object libs/klib/CMakeFiles/klib.dir/debug.c.o [ 50%] Building C object libs/klib/CMakeFiles/klib.dir/unix/misc.c.o [ 50%] Building C object libs/klib/CMakeFiles/klib.dir/unix/syslog.c.o [ 50%] Building C object libs/klib/CMakeFiles/klib.dir/unix/systime.c.o [ 51%] Building C object libs/klib/CMakeFiles/klib.dir/unix/syswriter.c.o [ 51%] Building C object libs/klib/CMakeFiles/klib.dir/unix/syserrcode.c.o [ 51%] Linking C static library ../../ilib/libklib.a [ 51%] Built target klib [ 51%] Building C object libs/klib/judy/CMakeFiles/judy.dir/JudyHS.c.o [ 51%] Building C object libs/klib/judy/CMakeFiles/judy.dir/JudyMalloc.c.o [ 51%] Building C object libs/klib/judy/CMakeFiles/judy.dir/JudySL.c.o [ 51%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit.c.o [ 51%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o [ 52%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Count.c.o [ 52%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o [ 52%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Next.c.o [ 52%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o [ 52%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Prev.c.o [ 52%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word.c.o [ 52%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Cascade.c.o [ 52%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Count.c.o [ 52%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Decascade.c.o [ 53%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Next.c.o [ 53%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o [ 53%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Prev.c.o [ 53%] Linking C static library ../../../ilib/libjudy.a [ 53%] Built target judy [ 53%] Building C object libs/kns/CMakeFiles/kns.dir/stream-from-buffer.c.o [ 53%] Building C object libs/kns/CMakeFiles/kns.dir/kns_manager-ext.c.o [ 53%] Building C object libs/kns/CMakeFiles/kns.dir/manager.c.o [ 53%] Building C object libs/kns/CMakeFiles/kns.dir/proxy.c.o [ 53%] Building C object libs/kns/CMakeFiles/kns.dir/stable-http-file.c.o [ 54%] Building C object libs/kns/CMakeFiles/kns.dir/buffered-stream.c.o [ 54%] Building C object libs/kns/CMakeFiles/kns.dir/stream.c.o [ 54%] Building C object libs/kns/CMakeFiles/kns.dir/stream-from-files.c.o [ 54%] Building C object libs/kns/CMakeFiles/kns.dir/stream-from-streams.c.o [ 54%] Building C object libs/kns/CMakeFiles/kns.dir/endpoint.c.o [ 54%] Building C object libs/kns/CMakeFiles/kns.dir/tls.c.o [ 54%] Building C object libs/kns/CMakeFiles/kns.dir/http-file.c.o [ 54%] Building C object libs/kns/CMakeFiles/kns.dir/http-client.c.o [ 54%] Building C object libs/kns/CMakeFiles/kns.dir/http-request.c.o [ 55%] Building C object libs/kns/CMakeFiles/kns.dir/http-retrier.c.o [ 55%] Building C object libs/kns/CMakeFiles/kns.dir/http.c.o [ 55%] Building C object libs/kns/CMakeFiles/kns.dir/unix/sysmgr.c.o [ 55%] Building C object libs/kns/CMakeFiles/kns.dir/unix/syssock.c.o [ 55%] Building C object libs/kns/CMakeFiles/kns.dir/unix/sysstream.c.o [ 55%] Building C object libs/kns/CMakeFiles/kns.dir/mac/sysendpoint.c.o [ 55%] Building C object libs/kns/CMakeFiles/kns.dir/mac/syspoll.c.o [ 55%] Linking C static library ../../ilib/libkns.a [ 55%] Built target kns [ 55%] Building C object libs/kproc/CMakeFiles/kproc.dir/task.c.o [ 56%] Building C object libs/kproc/CMakeFiles/kproc.dir/procmgr.c.o [ 56%] Building C object libs/kproc/CMakeFiles/kproc.dir/unix/syscond.c.o [ 56%] Building C object libs/kproc/CMakeFiles/kproc.dir/unix/systhread.c.o [ 56%] Building C object libs/kproc/CMakeFiles/kproc.dir/unix/systimeout.c.o [ 56%] Building C object libs/kproc/CMakeFiles/kproc.dir/bsd/syslock.c.o [ 56%] Building C object libs/kproc/CMakeFiles/kproc.dir/bsd/sysmgr.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/kproc/bsd/sysmgr.c:38:12: warning: call to undeclared function 'pthread_main_np'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration] 38 | return pthread_main_np () != 0; | ^ 1 warning generated. [ 56%] Building C object libs/kproc/CMakeFiles/kproc.dir/sem.c.o [ 56%] Linking C static library ../../ilib/libkproc.a [ 56%] Built target kproc [ 56%] Building C object libs/kproc/CMakeFiles/kq.dir/queue.c.o [ 57%] Linking C static library ../../ilib/libkq.a [ 57%] Built target kq [ 57%] Building C object libs/krypto/CMakeFiles/krypto.dir/ciphermgr.c.o [ 57%] Building C object libs/krypto/CMakeFiles/krypto.dir/wgaencrypt.c.o [ 57%] Building C object libs/krypto/CMakeFiles/krypto.dir/encfile.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/krypto/encfile.c:1835:18: warning: variable 'pos' set but not used [-Wunused-but-set-variable] 1835 | uint64_t pos; /* position within the encrypted file */ | ^ 1 warning generated. [ 57%] Building C object libs/krypto/CMakeFiles/krypto.dir/encfilev2.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/krypto/encfilev2.c:2459:18: warning: variable 'pos' set but not used [-Wunused-but-set-variable] 2459 | uint64_t pos; /* position within the encrypted file */ | ^ 1 warning generated. [ 57%] Building C object libs/krypto/CMakeFiles/krypto.dir/cipher.c.o [ 57%] Building C object libs/krypto/CMakeFiles/krypto.dir/aes-byte.c.o [ 57%] Building C object libs/krypto/CMakeFiles/krypto.dir/cipher-byte.c.o [ 57%] Building C object libs/krypto/CMakeFiles/krypto.dir/key.c.o [ 58%] Building C object libs/krypto/CMakeFiles/krypto.dir/reencfile.c.o [ 58%] Building C object libs/krypto/CMakeFiles/krypto.dir/rsa-aes-hmac.c.o [ 58%] Building C object libs/krypto/CMakeFiles/krypto.dir/no-null-ncbi.c.o [ 58%] Building C object libs/krypto/CMakeFiles/krypto.dir/cipher-no-vec.vec.c.o [ 58%] Building C object libs/krypto/CMakeFiles/krypto.dir/no-null-ncbi.vec.c.o [ 58%] Building C object libs/krypto/CMakeFiles/krypto.dir/cipher-no-vec.vecreg.c.o [ 58%] Building C object libs/krypto/CMakeFiles/krypto.dir/no-null-ncbi.vecreg.c.o [ 58%] Building C object libs/krypto/CMakeFiles/krypto.dir/cipher-no-vec.aes-ni.c.o [ 58%] Building C object libs/krypto/CMakeFiles/krypto.dir/no-null-ncbi.aes-ni.c.o [ 59%] Linking C static library ../../ilib/libkrypto.a [ 59%] Built target krypto [ 59%] Building C object libs/krypto/CMakeFiles/kryptotest.dir/testcipher.c.o [ 59%] Linking C static library ../../ilib/libkryptotest.a [ 59%] Built target kryptotest [ 59%] Building CXX object libs/schema/CMakeFiles/schema.dir/AST.cpp.o [ 59%] Building CXX object libs/schema/CMakeFiles/schema.dir/AST_Expr.cpp.o [ 59%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder-db.cpp.o [ 59%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder-func.cpp.o [ 60%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder-phys.cpp.o [ 60%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder-tbl.cpp.o [ 60%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder-type.cpp.o [ 60%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder-view.cpp.o [ 60%] Building CXX object libs/schema/CMakeFiles/schema.dir/ASTBuilder.cpp.o [ 60%] Building CXX object libs/schema/CMakeFiles/schema.dir/ErrorReport.cpp.o [ 60%] Building CXX object libs/schema/CMakeFiles/schema.dir/ParseTree.cpp.o [ 60%] Building CXX object libs/schema/CMakeFiles/schema.dir/zz_schema-ast.cpp.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/schema/zz_schema-ast.cpp:1903:9: warning: variable 'AST_nerrs' set but not used [-Wunused-but-set-variable] 1903 | int yynerrs; | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/schema/zz_schema-ast.cpp:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs AST_nerrs | ^ 1 warning generated. [ 60%] Building CXX object libs/schema/CMakeFiles/schema.dir/zz_schema-grammar.cpp.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/schema/zz_schema-grammar.cpp:5614:9: warning: variable 'Schema_nerrs' set but not used [-Wunused-but-set-variable] 5614 | int yynerrs; | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/schema/zz_schema-grammar.cpp:73:25: note: expanded from macro 'yynerrs' 73 | #define yynerrs Schema_nerrs | ^ 1 warning generated. [ 61%] Building C object libs/schema/CMakeFiles/schema.dir/zz_schema-lex.c.o [ 61%] Building CXX object libs/schema/CMakeFiles/schema.dir/SchemaParser.cpp.o [ 61%] Building CXX object libs/schema/CMakeFiles/schema.dir/SchemaScanner.cpp.o [ 61%] Building CXX object libs/schema/CMakeFiles/schema.dir/Token.cpp.o [ 61%] Linking CXX static library ../../ilib/libschema.a [ 61%] Built target schema [ 61%] Building C object libs/sra/CMakeFiles/sradb.dir/sramgr-cmn.c.o [ 61%] Building C object libs/sra/CMakeFiles/sradb.dir/sratbl-cmn.c.o [ 61%] Building C object libs/sra/CMakeFiles/sradb.dir/sracol.c.o [ 61%] Building C object libs/sra/CMakeFiles/sradb.dir/types.c.o [ 62%] Building C object libs/sra/CMakeFiles/sradb.dir/sracache.c.o [ 62%] Building C object libs/sra/CMakeFiles/sradb.dir/sramgr.c.o [ 62%] Building C object libs/sra/CMakeFiles/sradb.dir/sratbl.c.o [ 62%] Linking C static library ../../ilib/libsradb.a [ 62%] Built target sradb [ 62%] Building C object libs/sra/CMakeFiles/wsradb.dir/sramgr-cmn.c.o [ 62%] Building C object libs/sra/CMakeFiles/wsradb.dir/sratbl-cmn.c.o [ 62%] Building C object libs/sra/CMakeFiles/wsradb.dir/sracol.c.o [ 62%] Building C object libs/sra/CMakeFiles/wsradb.dir/types.c.o [ 62%] Building C object libs/sra/CMakeFiles/wsradb.dir/sracache.c.o [ 62%] Building C object libs/sra/CMakeFiles/wsradb.dir/wsramgr.c.o [ 62%] Building C object libs/sra/CMakeFiles/wsradb.dir/wsratbl.c.o [ 62%] Linking C static library ../../ilib/libwsradb.a [ 62%] Built target wsradb [ 62%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-cmn.c.o [ 62%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-fastq.c.o [ 62%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-sff.c.o [ 62%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-illumina.c.o [ 62%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-abi.c.o [ 63%] Linking C static library ../../ilib/libsrareader.a [ 63%] Built target srareader [ 63%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/untyped.c.o [ 63%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/v0-decompress-init.c.o [ 63%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/v0-decompress.c.o [ 63%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/v0-funcs.c.o [ 63%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/bio-start.c.o [ 63%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/dynamic-454-read-descriptor.c.o [ 63%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/format-spot-name.c.o [ 64%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/extract-name_coord.c.o [ 64%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-454.c.o [ 64%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-illumina.c.o [ 64%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-abi.c.o [ 64%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-helicos.c.o [ 64%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-ion-torrent.c.o [ 64%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/tokenize-spot_name-generic-fastq.c.o [ 64%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/color-from-dna.c.o [ 64%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/dna-from-color.c.o [ 65%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/use-rna-flag.c.o [ 65%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/spot-desc.c.o [ 65%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/read-desc.c.o [ 65%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/rotate.c.o [ 65%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/swap.c.o [ 65%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/denormalize.c.o [ 65%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/normalize.c.o [ 65%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/qual4_decode.c.o [ 65%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/read-seg-from-readn.c.o [ 66%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/rewrite-spot-name.c.o [ 66%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/make-position.c.o [ 66%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/process-position.c.o [ 66%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/extract-coordinates.c.o [ 66%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/fpcodec.c.o [ 66%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/index_lookup.c.o [ 66%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/varloc.c.o [ 66%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/spot-filter.c.o [ 66%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/syn_quality.c.o [ 67%] Linking C static library ../../ilib/libsraxf.a [ 67%] Built target sraxf [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/untyped.c.o [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/v0-decompress-init.c.o [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/v0-decompress.c.o [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/v0-funcs.c.o [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/bio-start.c.o [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/dynamic-454-read-descriptor.c.o [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/format-spot-name.c.o [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/extract-name_coord.c.o [ 68%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-454.c.o [ 69%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-illumina.c.o [ 69%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-abi.c.o [ 69%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-helicos.c.o [ 69%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-ion-torrent.c.o [ 69%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/tokenize-spot_name-generic-fastq.c.o [ 69%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/color-from-dna.c.o [ 69%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/dna-from-color.c.o [ 69%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/use-rna-flag.c.o [ 69%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/spot-desc.c.o [ 70%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/read-desc.c.o [ 70%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/rotate.c.o [ 70%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/swap.c.o [ 70%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/denormalize.c.o [ 70%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/normalize.c.o [ 70%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/qual4_decode.c.o [ 70%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/read-seg-from-readn.c.o [ 70%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/rewrite-spot-name.c.o [ 70%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/make-position.c.o [ 71%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/process-position.c.o [ 71%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/extract-coordinates.c.o [ 71%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/fpcodec.c.o [ 71%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/index_lookup.c.o [ 71%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/varloc.c.o [ 71%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/spot-filter.c.o [ 71%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/syn_quality.c.o [ 71%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/extract-name_fmt.c.o [ 71%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/extract-spot_name.c.o [ 72%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/stats.c.o [ 72%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/stats_quality.c.o [ 72%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/qual4_encode.c.o [ 72%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/set-rna-flag.c.o [ 72%] Linking C static library ../../ilib/libwsraxf.a [ 72%] Built target wsraxf [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/dbmgr-cmn.c.o [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-tok.c.o [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-parse.c.o [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-type.c.o [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-func.c.o [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-prod.c.o [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-expr.c.o [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-eval.c.o [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-tbl.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/vdb/schema-tbl.c:1153:26: warning: variable 'cmp_bits' set but not used [-Wunused-but-set-variable] 1153 | uint32_t stage_bits, cmp_bits = 0; | ^ 1 warning generated. [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-view.c.o [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-db.c.o [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-dump.c.o [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-int.c.o [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema.c.o [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/linker-int.c.o [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/linker-cmn.c.o [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/database-cmn.c.o [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/database-depend.c.o [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/database-load.c.o [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/table-cmn.c.o [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/table-load.c.o [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/cursor-cmn.c.o [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/column-cmn.c.o [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/prod-cmn.c.o [ 74%] Building C object libs/vdb/CMakeFiles/vdb.dir/prod-expr.c.o [ 75%] Building C object libs/vdb/CMakeFiles/vdb.dir/prod-func.c.o [ 75%] Building C object libs/vdb/CMakeFiles/vdb.dir/phys-cmn.c.o [ 75%] Building C object libs/vdb/CMakeFiles/vdb.dir/phys-load.c.o [ 75%] Building C object libs/vdb/CMakeFiles/vdb.dir/blob.c.o [ 75%] Building C object libs/vdb/CMakeFiles/vdb.dir/blob-headers.c.o [ 75%] Building C object libs/vdb/CMakeFiles/vdb.dir/row-id.c.o [ 75%] Building C object libs/vdb/CMakeFiles/vdb.dir/row-len.c.o [ 75%] Building C object libs/vdb/CMakeFiles/vdb.dir/fixed-row-len.c.o [ 75%] Building C object libs/vdb/CMakeFiles/vdb.dir/merge.c.o [ 76%] Building C object libs/vdb/CMakeFiles/vdb.dir/split.c.o [ 76%] Building C object libs/vdb/CMakeFiles/vdb.dir/compare.c.o [ 76%] Building C object libs/vdb/CMakeFiles/vdb.dir/meta-read.c.o [ 76%] Building C object libs/vdb/CMakeFiles/vdb.dir/meta-value.c.o [ 76%] Building C object libs/vdb/CMakeFiles/vdb.dir/meta-attr-read.c.o [ 76%] Building C object libs/vdb/CMakeFiles/vdb.dir/cast.c.o [ 76%] Building C object libs/vdb/CMakeFiles/vdb.dir/range-validate.c.o [ 76%] Building C object libs/vdb/CMakeFiles/vdb.dir/parameter-read.c.o [ 76%] Building C object libs/vdb/CMakeFiles/vdb.dir/redimension.c.o [ 77%] Building C object libs/vdb/CMakeFiles/vdb.dir/index_project.c.o [ 77%] Building C object libs/vdb/CMakeFiles/vdb.dir/index_lookup.c.o [ 77%] Building C object libs/vdb/CMakeFiles/vdb.dir/transpose.c.o [ 77%] Building C object libs/vdb/CMakeFiles/vdb.dir/delta_average.c.o [ 77%] Building C object libs/vdb/CMakeFiles/vdb.dir/report-vdb.c.o [ 77%] Building C object libs/vdb/CMakeFiles/vdb.dir/bytecode.c.o [ 77%] Building C object libs/vdb/CMakeFiles/vdb.dir/view.c.o [ 77%] Building C object libs/vdb/CMakeFiles/vdb.dir/cursor-view.c.o [ 77%] Building C object libs/vdb/CMakeFiles/vdb.dir/cursor-table.c.o [ 78%] Building C object libs/vdb/CMakeFiles/vdb.dir/dbmgr.c.o [ 78%] Building C object libs/vdb/CMakeFiles/vdb.dir/linker.c.o [ 78%] Building C object libs/vdb/CMakeFiles/vdb.dir/database.c.o [ 78%] Building C object libs/vdb/CMakeFiles/vdb.dir/table.c.o [ 78%] Building C object libs/vdb/CMakeFiles/vdb.dir/cursor.c.o [ 78%] Building C object libs/vdb/CMakeFiles/vdb.dir/column.c.o [ 78%] Building C object libs/vdb/CMakeFiles/vdb.dir/prod.c.o [ 78%] Building C object libs/vdb/CMakeFiles/vdb.dir/phys.c.o [ 78%] Linking C static library ../../ilib/libvdb.a [ 78%] Built target vdb [ 78%] Building C object libs/vdb/CMakeFiles/wvdb.dir/dbmgr-cmn.c.o [ 78%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-tok.c.o [ 78%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-parse.c.o [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-type.c.o [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-func.c.o [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-prod.c.o [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-expr.c.o [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-eval.c.o [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-tbl.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/vdb/schema-tbl.c:1153:26: warning: variable 'cmp_bits' set but not used [-Wunused-but-set-variable] 1153 | uint32_t stage_bits, cmp_bits = 0; | ^ 1 warning generated. [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-view.c.o [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-db.c.o [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-dump.c.o [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-int.c.o [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema.c.o [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/linker-int.c.o [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/linker-cmn.c.o [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/database-cmn.c.o [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/database-depend.c.o [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/database-load.c.o [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/table-cmn.c.o [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/table-load.c.o [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/cursor-cmn.c.o [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/column-cmn.c.o [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/prod-cmn.c.o [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/prod-expr.c.o [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/prod-func.c.o [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/phys-cmn.c.o [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/phys-load.c.o [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/blob.c.o [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/blob-headers.c.o [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/row-id.c.o [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/row-len.c.o [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/fixed-row-len.c.o [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/merge.c.o [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/split.c.o [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/compare.c.o [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/meta-read.c.o [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/meta-value.c.o [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/meta-attr-read.c.o [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/cast.c.o [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/range-validate.c.o [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/parameter-read.c.o [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/redimension.c.o [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/index_project.c.o [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/index_lookup.c.o [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/transpose.c.o [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/delta_average.c.o [ 84%] Building C object libs/vdb/CMakeFiles/wvdb.dir/report-vdb.c.o [ 84%] Building C object libs/vdb/CMakeFiles/wvdb.dir/bytecode.c.o [ 84%] Building C object libs/vdb/CMakeFiles/wvdb.dir/view.c.o [ 84%] Building C object libs/vdb/CMakeFiles/wvdb.dir/cursor-view.c.o [ 84%] Building C object libs/vdb/CMakeFiles/wvdb.dir/cursor-table.c.o [ 84%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wdbmgr.c.o [ 84%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wlinker.c.o [ 84%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wdatabase.c.o [ 84%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wtable.c.o [ 85%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wcursor.c.o [ 85%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wcolumn.c.o [ 85%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wprod.c.o [ 85%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wphys.c.o [ 85%] Building C object libs/vdb/CMakeFiles/wvdb.dir/meta-write.c.o [ 85%] Building C object libs/vdb/CMakeFiles/wvdb.dir/meta-attr-write.c.o [ 85%] Building C object libs/vdb/CMakeFiles/wvdb.dir/meta-append.c.o [ 85%] Building C object libs/vdb/CMakeFiles/wvdb.dir/index_insert.c.o [ 85%] Linking C static library ../../ilib/libwvdb.a [ 85%] Built target wvdb [ 85%] Building C object libs/vfs/CMakeFiles/vfs.dir/jwt.c.o [ 85%] Building C object libs/vfs/CMakeFiles/vfs.dir/names4-response.c.o [ 85%] Building C object libs/vfs/CMakeFiles/vfs.dir/manager.c.o [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/remote-services.c.o /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/libs/vfs/remote-services.c:1837:10: warning: variable 'made' set but not used [-Wunused-but-set-variable] 1837 | bool made = false; | ^ 1 warning generated. [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/resolver.c.o [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/resolver-3.0.c.o [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/sdl-response.c.o [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/services.c.o [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/services-cache.c.o [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/SraDesc.c.o [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/srv-response.c.o [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/path.c.o [ 87%] Building C object libs/vfs/CMakeFiles/vfs.dir/unix/syskeyring.c.o [ 87%] Building C object libs/vfs/CMakeFiles/vfs.dir/unix/syspath.c.o [ 87%] Linking C static library ../../ilib/libvfs.a [ 87%] Built target vfs [ 87%] Building C object libs/vxf/CMakeFiles/vxf.dir/ceil.c.o [ 87%] Building C object libs/vxf/CMakeFiles/vxf.dir/clip.c.o [ 87%] Building C object libs/vxf/CMakeFiles/vxf.dir/cut.c.o [ 87%] Building C object libs/vxf/CMakeFiles/vxf.dir/echo.c.o [ 87%] Building C object libs/vxf/CMakeFiles/vxf.dir/exists.c.o [ 87%] Building C object libs/vxf/CMakeFiles/vxf.dir/floor.c.o [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/paste.c.o [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/round.c.o [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/trunc.c.o [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/unzip.c.o [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/map.c.o [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/funzip.c.o [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/vec-sum.c.o [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/min.c.o [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/max.c.o [ 89%] Building C object libs/vxf/CMakeFiles/vxf.dir/rldecode.c.o [ 89%] Building C object libs/vxf/CMakeFiles/vxf.dir/pack.c.o [ 89%] Building C object libs/vxf/CMakeFiles/vxf.dir/unpack.c.o [ 89%] Building C object libs/vxf/CMakeFiles/vxf.dir/izip.c.o [ 89%] Building C object libs/vxf/CMakeFiles/vxf.dir/iunzip.c.o [ 89%] Building C object libs/vxf/CMakeFiles/vxf.dir/diff.c.o [ 89%] Building C object libs/vxf/CMakeFiles/vxf.dir/sum.c.o [ 89%] Building C object libs/vxf/CMakeFiles/vxf.dir/bit_or.c.o [ 89%] Building C object libs/vxf/CMakeFiles/vxf.dir/trim.c.o [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/deriv.c.o [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/integral.c.o [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/integral_0.c.o [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/delta.c.o [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/undelta.c.o [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/add-row-id.c.o [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/subtract-row-id.c.o [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/irzip.c.o [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/rand_4na_2na.c.o [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/outlier-encoder.c.o [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/outlier-decoder.c.o [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/bunzip.c.o [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/simple-sub-select.c.o [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/extract_token.c.o [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/strtonum.c.o [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/sprintf.c.o [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/wgs-tokenize-accession.c.o [ 92%] Building C object libs/vxf/CMakeFiles/vxf.dir/lower-case-tech-reads.c.o [ 92%] Building C object libs/vxf/CMakeFiles/vxf.dir/unzstd.c.o [ 92%] Linking C static library ../../ilib/libvxf.a [ 92%] Built target vxf [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/ceil.c.o [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/clip.c.o [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/cut.c.o [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/echo.c.o [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/exists.c.o [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/floor.c.o [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/paste.c.o [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/round.c.o [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/trunc.c.o [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/unzip.c.o [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/map.c.o [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/funzip.c.o [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/vec-sum.c.o [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/min.c.o [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/max.c.o [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/rldecode.c.o [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/pack.c.o [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/unpack.c.o [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/izip.c.o [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/iunzip.c.o [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/diff.c.o [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/sum.c.o [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/bit_or.c.o [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/trim.c.o [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/deriv.c.o [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/integral.c.o [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/integral_0.c.o [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/delta.c.o [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/undelta.c.o [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/add-row-id.c.o [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/subtract-row-id.c.o [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/irzip.c.o [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/rand_4na_2na.c.o [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/outlier-encoder.c.o [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/outlier-decoder.c.o [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/bunzip.c.o [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/simple-sub-select.c.o [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/extract_token.c.o [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/strtonum.c.o [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/sprintf.c.o [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/wgs-tokenize-accession.c.o [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/lower-case-tech-reads.c.o [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/unzstd.c.o [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/zip.c.o [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/bzip.c.o [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/fzip.c.o [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/rlencode.c.o [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/checksum.c.o [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/zstd.c.o [ 98%] Linking C static library ../../ilib/libwvxf.a [ 98%] Built target wvxf [ 98%] Building C object libs/wgsxf/CMakeFiles/wgsxf.dir/build_scaffold.c.o [ 98%] Building C object libs/wgsxf/CMakeFiles/wgsxf.dir/build_read_type.c.o [ 99%] Linking C static library ../../ilib/libwgsxf.a [ 99%] Built target wgsxf [ 99%] Building C object libs/wgsxf/CMakeFiles/wwgsxf.dir/build_scaffold.c.o [ 99%] Building C object libs/wgsxf/CMakeFiles/wwgsxf.dir/build_read_type.c.o [ 99%] Linking C static library ../../ilib/libwwgsxf.a [ 99%] Built target wwgsxf [ 99%] Linking CXX static library ../../lib/libncbi-vdb.a [ 99%] Built target ncbi-vdb [ 99%] Linking CXX shared library ../../lib/libncbi-vdb.so [ 99%] Built target ncbi-vdb-shared [100%] Linking CXX static library ../../lib/libncbi-wvdb.a [100%] Built target ncbi-wvdb [100%] Linking CXX shared library ../../lib/libncbi-wvdb.so [100%] Built target ncbi-wvdb-shared ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/sra-tools/work/.build CMAKE_VERSION=3.31.6 -- The C compiler identification is Clang 18.1.6 -- The CXX compiler identification is Clang 18.1.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at build/env.cmake:32 (cmake_policy): The OLD behavior for policy CMP0115 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. Call Stack (most recent call first): CMakeLists.txt:62 (include) BUILD_TOOLS_INTERNAL=OFF BUILD_TOOLS_LOADERS=OFF BUILD_TOOLS_TEST_TOOLS=OFF TOOLS_ONLY=ON VERSION=3.2.1 -- Found FLEX: /usr/bin/flex (found suitable version "2.6.4", minimum required is "2.6") -- Found BISON: /usr/local/bin/bison (found suitable version "3.8.2", minimum required is "3") -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) -- Found Java: /usr/local/bin/java (found version "21.0.7") found components: Development -- Found Python3: /usr/local/bin/python3.11 (found version "3.11.12") found components: Interpreter Using ncbi-vdb interfaces: /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces Using ncbi-vdb binary libraries: /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -- Looking for C++ include mbedtls/md.h -- Looking for C++ include mbedtls/md.h - not found RUN_SANITIZER_TESTS: OFF -- Could NOT find JNI (missing: JAVA_INCLUDE_PATH JAVA_INCLUDE_PATH2 AWT JVM) -- Configuring done (1.0s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/biology/sra-tools/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for sra-tools-3.2.1 [ 0% 1/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"shared\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o -MF shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o.d -o shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/shared/toolkit.vers.c [ 0% 2/418] : && /usr/local/bin/cmake -E rm -f ilib/libtk-version.a && /usr/bin/llvm-ar qc ilib/libtk-version.a shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o && /usr/bin/llvm-ranlib ilib/libtk-version.a && : [ 0% 3/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NCBI-NGS.c [ 0% 4/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/CSRA1_PileupEvent.c [ 1% 5/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/CSRA1_Pileup.c [ 1% 6/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/CSRA1_Alignment.c [ 1% 7/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/CSRA1_ReferenceWindow.c [ 1% 8/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/CSRA1_Reference.c [ 2% 9/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/CSRA1_ReadCollection.c [ 2% 10/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/CSRA1_Read.c [ 2% 11/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/EBI_ReferenceSequence.c [ 2% 12/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -Wno-implicit-int-float-conversion -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/SRA_Statistics.c [ 3% 13/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/SRA_DB_ReadCollection.c [ 3% 14/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/SRA_Read.c [ 3% 15/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/SRA_ReadGroup.c [ 3% 16/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/SRA_ReadGroupInfo.c [ 4% 17/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/SRA_ReadCollection.c [ 4% 18/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/SRA_ReferenceSequence.c [ 4% 19/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_Statistics.c [ 4% 20/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_ReadCollection.c [ 5% 21/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_PileupEvent.c [ 5% 22/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_Pileup.c [ 5% 23/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_ReadGroup.c [ 5% 24/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_Alignment.c [ 5% 25/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_Reference.c [ 6% 26/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_ReferenceSequence.c [ 6% 27/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_Read.c [ 6% 28/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_Fragment.c [ 6% 29/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_Cursor.c [ 7% 30/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_Refcount.c [ 7% 31/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_String.c [ 7% 32/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_Id.c [ 7% 33/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_ErrBlock.c [ 8% 34/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_FragmentBlob.c [ 8% 35/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_FragmentBlobIterator.c [ 8% 36/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_ReferenceBlob.c [ 8% 37/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/NGS_ReferenceBlobIterator.c [ 9% 38/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o -MF ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o.d -o ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs/VByteBlob.c [ 9% 39/418] : && /usr/local/bin/cmake -E rm -f ilib/libngs.a && /usr/bin/llvm-ar qc ilib/libngs.a ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o && /usr/bin/llvm-ranlib ilib/libngs.a && : [ 9% 40/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs-c++\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -MF ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o.d -o ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-c++/NCBI-NGS.cpp [ 9% 41/418] : && /usr/local/bin/cmake -E rm -f lib/libncbi-ngs-c++.a && /usr/bin/llvm-ar qc lib/libncbi-ngs-c++.a ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o && /usr/bin/llvm-ranlib lib/libncbi-ngs-c++.a && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/lib && rm -f libncbi-ngs-c++.a.3.2.1 && mv libncbi-ngs-c++.a libncbi-ngs-c++.a.3.2.1 && ln -f -s libncbi-ngs-c++.a.3.2.1 libncbi-ngs-c++.a.3 && ln -f -s libncbi-ngs-c++.a.3 libncbi-ngs-c++.a && ln -f -s libncbi-ngs-c++.a libncbi-ngs-c++-static.a [ 10% 42/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o -MF ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o.d -o ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni/jni_Manager.c [ 10% 43/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o -MF ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o.d -o ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni/jni_String.c [ 10% 44/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -MF ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o.d -o ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni/jni_ErrorMsg.c [ 10% 45/418] : && /usr/local/bin/cmake -E rm -f ilib/libngs-jni.a && /usr/bin/llvm-ar qc ilib/libngs-jni.a ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o && /usr/bin/llvm-ranlib ilib/libngs-jni.a && : [ 11% 46/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"ngs/ncbi/ngs-py\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o -MF ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o.d -o ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py/py_Manager.c [ 11% 47/418] : && /usr/local/bin/cmake -E rm -f ilib/libngs-py.a && /usr/bin/llvm-ar qc ilib/libngs-py.a ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o && /usr/bin/llvm-ranlib ilib/libngs-py.a && : [ 11% 48/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/ReadCollectionItf.cpp [ 11% 49/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/PileupItf.cpp [ 11% 50/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/PileupEventItf.cpp [ 12% 51/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/ReferenceItf.cpp [ 12% 52/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/ReferenceSequenceItf.cpp [ 12% 53/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/AlignmentItf.cpp [ 12% 54/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/ReadGroupItf.cpp [ 13% 55/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/ReadItf.cpp [ 13% 56/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/FragmentItf.cpp [ 13% 57/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/StatisticsItf.cpp [ 13% 58/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/StringItf.cpp [ 14% 59/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/Refcount.cpp [ 14% 60/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/ErrorMsg.cpp [ 14% 61/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -MF ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o.d -o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/adapter/ErrBlock.cpp [ 14% 62/418] : && /usr/local/bin/cmake -E rm -f ilib/libngs-adapt-c++.a && /usr/bin/llvm-ar qc ilib/libngs-adapt-c++.a ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o && /usr/bin/llvm-ranlib ilib/libngs-adapt-c++.a && : [ 15% 63/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/ReadCollectionItf.cpp [ 15% 64/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/ReferenceItf.cpp [ 15% 65/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/ReferenceSequenceItf.cpp [ 15% 66/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/PileupItf.cpp [ 16% 67/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/PileupEventItf.cpp [ 16% 68/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/AlignmentItf.cpp [ 16% 69/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/ReadGroupItf.cpp [ 16% 70/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/ReadItf.cpp [ 16% 71/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/FragmentItf.cpp [ 17% 72/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/StatisticsItf.cpp [ 17% 73/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/PackageItf.cpp [ 17% 74/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/StringItf.cpp [ 17% 75/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/Refcount.cpp [ 18% 76/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/VTable.cpp [ 18% 77/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/ErrBlock.cpp [ 18% 78/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -MF ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o.d -o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/dispatch/ErrorMsg.cpp [ 18% 79/418] : && /usr/local/bin/cmake -E rm -f ilib/libngs-disp.a && /usr/bin/llvm-ar qc ilib/libngs-disp.a ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o && /usr/bin/llvm-ranlib ilib/libngs-disp.a && : [ 19% 80/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/ReadCollection.cpp [ 19% 81/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/ReferenceSequence.cpp [ 19% 82/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/ReferenceIterator.cpp [ 19% 83/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/Reference.cpp [ 20% 84/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/PileupIterator.cpp [ 20% 85/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/Pileup.cpp [ 20% 86/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/PileupEventIterator.cpp [ 20% 87/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/PileupEvent.cpp [ 21% 88/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/AlignmentIterator.cpp [ 21% 89/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/Alignment.cpp [ 21% 90/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/ReadGroupIterator.cpp [ 21% 91/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/ReadGroup.cpp [ 22% 92/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/ReadIterator.cpp [ 22% 93/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/Read.cpp [ 22% 94/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/FragmentIterator.cpp [ 22% 95/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/Fragment.cpp [ 22% 96/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/Statistics.cpp [ 23% 97/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -MF ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o.d -o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/c++/StringRef.cpp [ 23% 98/418] : && /usr/local/bin/cmake -E rm -f ilib/libngs-bind-c++.a && /usr/bin/llvm-ar qc ilib/libngs-bind-c++.a ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o && /usr/bin/llvm-ranlib ilib/libngs-bind-c++.a && : [ 23% 99/418] : && /usr/local/bin/cmake -E rm -f lib/libngs-c++.a && /usr/bin/llvm-ar qc lib/libngs-c++.a ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o && /usr/bin/llvm-ranlib lib/libngs-c++.a && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/lib && rm -f libngs-c++.a.3.2.1 && mv libngs-c++.a libngs-c++.a.3.2.1 && ln -f -s libngs-c++.a.3.2.1 libngs-c++.a.3 && ln -f -s libngs-c++.a.3 libngs-c++.a && ln -f -s libngs-c++.a libngs-c++-static.a [ 23% 100/418] : && /usr/local/libexec/ccache/c++ -fPIC -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/link.d -shared -Wl,-soname,libngs-c++.so -o lib/libngs-c++.so ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/lib && rm -f libngs-c++.so.3.2.1 && mv libngs-c++.so libngs-c++.so.3.2.1 && ln -f -s libngs-c++.so.3.2.1 libngs-c++.so.3 && ln -f -s libngs-c++.so.3 libngs-c++.so [ 24% 101/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_ReadCollectionItf.cpp [ 24% 102/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_ReferenceIteratorItf.cpp [ 24% 103/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_ReferenceItf.cpp [ 24% 104/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_ReferenceSequenceItf.cpp [ 25% 105/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_PileupIteratorItf.cpp [ 25% 106/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_PileupItf.cpp [ 25% 107/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_PileupEventIteratorItf.cpp [ 25% 108/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_PileupEventItf.cpp [ 26% 109/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_AlignmentIteratorItf.cpp [ 26% 110/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_AlignmentItf.cpp [ 26% 111/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_ReadGroupIteratorItf.cpp [ 26% 112/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_ReadGroupItf.cpp [ 27% 113/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_ReadIteratorItf.cpp [ 27% 114/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_ReadItf.cpp [ 27% 115/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_FragmentItf.cpp [ 27% 116/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_StatisticsItf.cpp [ 27% 117/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_Package.cpp [ 28% 118/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_String.cpp [ 28% 119/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_Refcount.cpp [ 28% 120/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-jni -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -MF ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o.d -o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/java/jni_ErrorMsg.cpp [ 28% 121/418] : && /usr/local/bin/cmake -E rm -f ilib/libngs-bind-java.a && /usr/bin/llvm-ar qc ilib/libngs-bind-java.a ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o && /usr/bin/llvm-ranlib ilib/libngs-bind-java.a && : [ 29% 122/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_AlignmentItf.cpp [ 29% 123/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_AlignmentIteratorItf.cpp [ 29% 124/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_FragmentItf.cpp [ 29% 125/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_FragmentIteratorItf.cpp [ 30% 126/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_PackageItf.cpp [ 30% 127/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_PileupEventItf.cpp [ 30% 128/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_PileupEventIteratorItf.cpp [ 30% 129/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_PileupItf.cpp [ 31% 130/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_PileupIteratorItf.cpp [ 31% 131/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_ReadCollectionItf.cpp [ 31% 132/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_ReadGroupItf.cpp [ 31% 133/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_ReadGroupIteratorItf.cpp [ 32% 134/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_ReadItf.cpp [ 32% 135/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_ReadIteratorItf.cpp [ 32% 136/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_ReferenceItf.cpp [ 32% 137/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_ReferenceIteratorItf.cpp [ 33% 138/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_ReferenceSequenceItf.cpp [ 33% 139/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_StatisticsItf.cpp [ 33% 140/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_Refcount.cpp [ 33% 141/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs-py -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -MF ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o.d -o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk/language/python/py_StringItf.cpp [ 33% 142/418] : && /usr/local/bin/cmake -E rm -f ilib/libngs-bind-python.a && /usr/bin/llvm-ar qc ilib/libngs-bind-python.a ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o && /usr/bin/llvm-ranlib ilib/libngs-bind-python.a && : [ 34% 143/418] : && /usr/local/bin/cmake -E rm -f lib/libncbi-ngs.a && /usr/bin/llvm-ar qc lib/libncbi-ngs.a ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o && /usr/bin/llvm-ranlib lib/libncbi-ngs.a && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/lib && rm -f libncbi-ngs.a.3.2.1 && mv libncbi-ngs.a libncbi-ngs.a.3.2.1 && ln -f -s libncbi-ngs.a.3.2.1 libncbi-ngs.a.3 && ln -f -s libncbi-ngs.a.3 libncbi-ngs.a && ln -f -s libncbi-ngs.a libncbi-ngs-static.a [ 34% 144/418] : && /usr/local/libexec/ccache/c++ -fPIC -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/link.d -shared -Wl,-soname,libncbi-ngs.so -o lib/libncbi-ngs.so ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/lib && rm -f libncbi-ngs.so.3.2.1 && mv libncbi-ngs.so libncbi-ngs.so.3.2.1 && ln -f -s libncbi-ngs.so.3.2.1 libncbi-ngs.so.3 && ln -f -s libncbi-ngs.so.3 libncbi-ngs.so [ 34% 145/418] cd /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java && /usr/local/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/local/share/cmake/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS && /usr/local/bin/javac -classpath :/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java:/wrkdirs/usr/ports/biology/sra-tools/work/.build/lib -d /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/CMakeFiles/ngs-java.dir @/wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/CMakeFiles/ngs-java.dir/java_sources && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/CMakeFiles/ngs-java.dir/java_compiled_ngs-java ngs/itf/Refcount.java:57: warning: [removal] finalize() in Object has been deprecated and marked for removal protected void finalize () ^ Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. 1 warning [ 34% 146/418] cd /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java && /usr/local/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/local/share/cmake/Modules/UseJava/ClassFilelist.cmake [ 35% 147/418] cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/local/bin/jar -cf /wrkdirs/usr/ports/biology/sra-tools/work/.build/lib/ngs-java.jar @java_class_filelist && /usr/local/bin/cmake -D_JAVA_TARGET_DIR=/wrkdirs/usr/ports/biology/sra-tools/work/.build/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/local/share/cmake/Modules/UseJava/Symlinks.cmake [ 35% 148/418] cd /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java && /usr/local/bin/javadoc -d /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc -sourcepath "/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java" gov.nih.nlm.ncbi.ngs ngs Loading source files for package gov.nih.nlm.ncbi.ngs... Loading source files for package ngs... Constructing Javadoc information... Creating destination directory: "/wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/" Building index for all the packages and classes... Standard Doclet version 21.0.7+6-1 Building tree for all the packages and classes... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Alignment.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:140: warning: no comment static int all = primaryAlignment | secondaryAlignment; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:176: warning: no comment static int clipLeft = 0; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:177: warning: no comment static int clipRight = 1; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:132: warning: no comment static int maxMapQuality = 8; // pass alignments with mappingQuality <= param ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:131: warning: no comment static int minMapQuality = 4; // pass alignments with mappingQuality >= param ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:133: warning: no comment static int noWraparound = 16; // do not include leading wrapped around alignments to circular references ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:130: warning: no comment static int passDuplicates = 2; // either a PCR or optical duplicate ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:129: warning: no comment static int passFailed = 1; // reads rejected due to platform/vendor quality criteria ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:138: warning: no comment static int primaryAlignment = 1; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:139: warning: no comment static int secondaryAlignment = 2; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:134: warning: no comment static int startWithinSlice = 32; // change slice intersection criteria so that start pos is within slice ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/AlignmentIterator.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ErrorMsg.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ErrorMsg.java:38: warning: no main description * @return What went wrong ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ErrorMsg.java:49: warning: no comment public ErrorMsg () ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ErrorMsg.java:53: warning: no comment public ErrorMsg ( String message ) ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ErrorMsg.java:58: warning: no comment public ErrorMsg ( ErrorMsg obj ) ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Fragment.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/FragmentIterator.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/LibDependencies.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:29: warning: no comment public class LibDependencies { ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:34: warning: no comment public final static String NCBI_VDB = "ncbi-ngs"; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:30: warning: no comment public final static String NGS_SDK = "ngs-sdk"; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:29: warning: use of default constructor, which does not provide a comment public class LibDependencies { ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/NGS.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:40: warning: no comment public class NGS ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:40: warning: use of default constructor, which does not provide a comment public class NGS ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:133: warning: no comment public static void main(String[] args) { ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Package.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Package.java:37: warning: no main description * @return package version as a 1..3 part string ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Package.java:33: warning: use of default constructor, which does not provide a comment public class Package ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Pileup.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Pileup.java:58: warning: no main description * @return base at current Reference position ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupEvent.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:118: warning: no comment static int alignment_minus_strand = 0x20; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:116: warning: no comment static int alignment_start = 0x80; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:117: warning: no comment static int alignment_stop = 0x40; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:98: warning: no comment static int deletion = 2; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:104: warning: no comment static int insertion = 0x08; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:112: warning: no comment static int insertion_before_deletion = insertion | deletion; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:107: warning: no comment static int insertion_before_match = insertion | match; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:108: warning: no comment static int insertion_before_mismatch = insertion | mismatch; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:180: warning: no comment static int intron_minus = 2; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:179: warning: no comment static int intron_plus = 1; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:181: warning: no comment static int intron_unknown = 3; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:97: warning: no comment static int mismatch = 1; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:191: warning: no comment static int read_gap = 5; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:186: warning: no comment static int read_overlap = 4; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:113: warning: no comment static int replacement = insertion_before_deletion; ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupEventIterator.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupIterator.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Read.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Read.java:35: warning: no comment public interface Read ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Read.java:79: warning: no comment static int aligned = fullyAligned | partiallyAligned; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Read.java:81: warning: no comment static int all = aligned | unaligned; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Read.java:78: warning: no comment static int partiallyAligned = 2; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Read.java:80: warning: no comment static int unaligned = 4; ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadCollection.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ReadCollection.java:88: warning: no main description * @param spec the name of a contained read group ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ReadCollection.java:121: warning: no main description * @param spec the name of a contained Reference ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadGroup.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadGroupIterator.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadIterator.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ReadIterator.java:34: warning: no comment public interface ReadIterator ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Reference.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ReferenceIterator.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ReferenceSequence.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Statistics.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Statistics.java:41: warning: no comment static int int64 = 2; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Statistics.java:43: warning: no comment static int real = 4; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Statistics.java:40: warning: no comment static int string = 1; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Statistics.java:42: warning: no comment static int uint64 = 3; ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-summary.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-tree.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/package-summary.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/package-tree.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/constant-values.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/serialized-form.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/overview-tree.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/index.html... Building index for all classes... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/allclasses-index.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/allpackages-index.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/index-all.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/search.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/overview-summary.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/help-doc.html... 52 warnings [ 35% 149/418] cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc && sh -c /usr/local/bin/jar\ -cf\ /wrkdirs/usr/ports/biology/sra-tools/work/.build/lib/ngs-doc.jar\ . [ 35% 150/418] cd /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java && sh -c /usr/local/bin/jar\ -cf\ /wrkdirs/usr/ports/biology/sra-tools/work/.build/lib/ngs-src.jar\ \ ngs/ErrorMsg.java\ ngs/Statistics.java\ ngs/Fragment.java\ ngs/FragmentIterator.java\ ngs/Read.java\ ngs/ReadIterator.java\ ngs/ReadGroup.java\ ngs/ReadGroupIterator.java\ ngs/Alignment.java\ ngs/AlignmentIterator.java\ ngs/PileupEvent.java\ ngs/PileupEventIterator.java\ ngs/Pileup.java\ ngs/PileupIterator.java\ ngs/Reference.java\ ngs/ReferenceIterator.java\ ngs/ReadCollection.java\ ngs/Package.java\ ngs/itf/Refcount.java\ ngs/itf/StatisticsItf.java\ ngs/itf/FragmentItf.java\ ngs/itf/FragmentIteratorItf.java\ ngs/itf/ReadItf.java\ ngs/itf/ReadIteratorItf.java\ ngs/itf/ReadGroupItf.java\ ngs/itf/ReadGroupIteratorItf.java\ ngs/itf/AlignmentItf.java\ ngs/itf/AlignmentIteratorItf.java\ ngs/itf/PileupEventItf.java\ ngs/itf/PileupEventIteratorItf.java\ ngs/itf/PileupItf.java\ ngs/itf/PileupIteratorItf.java\ ngs/itf/ReferenceItf.java\ ngs/itf/ReferenceIteratorItf.java\ ngs/itf/ReadCollectionItf.java\ gov/nih/nlm/ncbi/ngs/DownloadManager.java\ gov/nih/nlm/ncbi/ngs/FileCreator.java\ gov/nih/nlm/ncbi/ngs/HttpManager.java\ gov/nih/nlm/ncbi/ngs/LibDependencies.java\ gov/nih/nlm/ncbi/ngs/LibManager.java\ gov/nih/nlm/ncbi/ngs/LibPathIterator.java\ gov/nih/nlm/ncbi/ngs/LibVersionChecker.java\ gov/nih/nlm/ncbi/ngs/LMProperties.java\ gov/nih/nlm/ncbi/ngs/Logger.java\ gov/nih/nlm/ncbi/ngs/Manager.java\ gov/nih/nlm/ncbi/ngs/NGS.java\ gov/nih/nlm/ncbi/ngs/Version.java\ gov/nih/nlm/ncbi/ngs/error/LibraryLoadError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryNotFoundError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryIncompatibleVersionError.java\ gov/nih/nlm/ncbi/ngs/error/cause/ConnectionProblemCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/DownloadDisabledCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/InvalidLibraryCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/JvmErrorCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/LibraryLoadCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/OutdatedJarCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/PrereleaseReqLibCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/UnsupportedArchCause.java [ 36% 151/418] cd /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/examples && /usr/local/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/local/share/cmake/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS && /usr/local/bin/javac -classpath :/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/examples:/wrkdirs/usr/ports/biology/sra-tools/work/.build/lib:/wrkdirs/usr/ports/biology/sra-tools/work/.build/lib/ngs-java.jar -d /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir @/wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_sources && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_compiled_ngs-examples [ 36% 152/418] cd /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/examples && /usr/local/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/local/share/cmake/Modules/UseJava/ClassFilelist.cmake [ 36% 153/418] cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/local/bin/jar -cf /wrkdirs/usr/ports/biology/sra-tools/work/.build/lib/ngs-examples.jar @java_class_filelist && /usr/local/bin/cmake -D_JAVA_TARGET_DIR=/wrkdirs/usr/ports/biology/sra-tools/work/.build/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-examples.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/local/share/cmake/Modules/UseJava/Symlinks.cmake [ 36% 154/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/loader/CMakeFiles/loader.dir/progressbar.c.o -MF libs/loader/CMakeFiles/loader.dir/progressbar.c.o.d -o libs/loader/CMakeFiles/loader.dir/progressbar.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/loader/progressbar.c [ 37% 155/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/loader/CMakeFiles/loader.dir/loader-file.c.o -MF libs/loader/CMakeFiles/loader.dir/loader-file.c.o.d -o libs/loader/CMakeFiles/loader.dir/loader-file.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/loader/loader-file.c [ 37% 156/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/loader/CMakeFiles/loader.dir/loader-meta.c.o -MF libs/loader/CMakeFiles/loader.dir/loader-meta.c.o.d -o libs/loader/CMakeFiles/loader.dir/loader-meta.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/loader/loader-meta.c [ 37% 157/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/loader/CMakeFiles/loader.dir/queue-file.c.o -MF libs/loader/CMakeFiles/loader.dir/queue-file.c.o.d -o libs/loader/CMakeFiles/loader.dir/queue-file.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/loader/queue-file.c [ 37% 158/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o -MF libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o.d -o libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/loader/alignment-writer.c [ 38% 159/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/loader/CMakeFiles/loader.dir/common-reader.c.o -MF libs/loader/CMakeFiles/loader.dir/common-reader.c.o.d -o libs/loader/CMakeFiles/loader.dir/common-reader.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/loader/common-reader.c [ 38% 160/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/loader/CMakeFiles/loader.dir/common-writer.c.o -MF libs/loader/CMakeFiles/loader.dir/common-writer.c.o.d -o libs/loader/CMakeFiles/loader.dir/common-writer.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/loader/common-writer.c [ 38% 161/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/loader/CMakeFiles/loader.dir/mmarray.c.o -MF libs/loader/CMakeFiles/loader.dir/mmarray.c.o.d -o libs/loader/CMakeFiles/loader.dir/mmarray.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/loader/mmarray.c [ 38% 162/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/loader/CMakeFiles/loader.dir/reference-writer.c.o -MF libs/loader/CMakeFiles/loader.dir/reference-writer.c.o.d -o libs/loader/CMakeFiles/loader.dir/reference-writer.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/loader/reference-writer.c [ 38% 163/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o -MF libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o.d -o libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/loader/sequence-writer.c [ 39% 164/418] : && /usr/local/bin/cmake -E rm -f ilib/libloader.a && /usr/bin/llvm-ar qc ilib/libloader.a libs/loader/CMakeFiles/loader.dir/progressbar.c.o libs/loader/CMakeFiles/loader.dir/loader-file.c.o libs/loader/CMakeFiles/loader.dir/loader-meta.c.o libs/loader/CMakeFiles/loader.dir/queue-file.c.o libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o libs/loader/CMakeFiles/loader.dir/common-reader.c.o libs/loader/CMakeFiles/loader.dir/common-writer.c.o libs/loader/CMakeFiles/loader.dir/mmarray.c.o libs/loader/CMakeFiles/loader.dir/reference-writer.c.o libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o && /usr/bin/llvm-ranlib ilib/libloader.a && : [ 39% 165/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/vdb-sqlite\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -Wno-deprecated-declarations -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -Wno-implicit-int-float-conversion -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o -MF libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o.d -o libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/vdb-sqlite/sqlite3.c [ 39% 166/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/vdb-sqlite\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -Wno-deprecated-declarations -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -MF libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o.d -o libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/vdb-sqlite/sqlite3vdb.c [ 39% 167/418] : && /usr/local/bin/cmake -E rm -f ilib/libvdb-sqlite.a && /usr/bin/llvm-ar qc ilib/libvdb-sqlite.a libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o && /usr/bin/llvm-ranlib ilib/libvdb-sqlite.a && : [ 40% 168/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -MF libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o.d -o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ngs-vdb/VdbReadCollection.cpp [ 40% 169/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -MF libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o.d -o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ngs-vdb/FragmentBlobIterator.cpp [ 40% 170/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -MF libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o.d -o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ngs-vdb/FragmentBlob.cpp /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ngs-vdb/FragmentBlob.cpp:125:9: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result] 125 | fragId . empty (); | ^~~~~~~~~~~~~~ 1 warning generated. [ 40% 171/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -MF libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o.d -o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ngs-vdb/VdbReference.cpp [ 41% 172/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -MF libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o.d -o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ngs-vdb/ReferenceBlob.cpp [ 41% 173/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -MF libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o.d -o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ngs-vdb/ReferenceBlobIterator.cpp [ 41% 174/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -MF libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o.d -o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ngs-vdb/VdbAlignment.cpp [ 41% 175/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -MF libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o.d -o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ngs-vdb/NGS-VDB.cpp [ 42% 176/418] : && /usr/local/bin/cmake -E rm -f ilib/libngs-vdb.a && /usr/bin/llvm-ar qc ilib/libngs-vdb.a libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o && /usr/bin/llvm-ranlib ilib/libngs-vdb.a && : [ 42% 177/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ascp -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/ascp/CMakeFiles/ascp.dir/ascp.c.o -MF libs/ascp/CMakeFiles/ascp.dir/ascp.c.o.d -o libs/ascp/CMakeFiles/ascp.dir/ascp.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ascp/ascp.c [ 42% 178/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ascp -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o -MF libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o.d -o libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ascp/unix/connect.c [ 42% 179/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ascp -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/ascp/CMakeFiles/ascp.dir/bsd/ascp-path.c.o -MF libs/ascp/CMakeFiles/ascp.dir/bsd/ascp-path.c.o.d -o libs/ascp/CMakeFiles/ascp.dir/bsd/ascp-path.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/ascp/bsd/ascp-path.c [ 43% 180/418] : && /usr/local/bin/cmake -E rm -f ilib/libascp.a && /usr/bin/llvm-ar qc ilib/libascp.a libs/ascp/CMakeFiles/ascp.dir/ascp.c.o libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o libs/ascp/CMakeFiles/ascp.dir/bsd/ascp-path.c.o && /usr/bin/llvm-ranlib ilib/libascp.a && : [ 43% 181/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/diagnose -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o -MF libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o.d -o libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/diagnose/diagnose.c [ 43% 182/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/diagnose -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o -MF libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o.d -o libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/diagnose/endpoint.c [ 43% 183/418] : && /usr/local/bin/cmake -E rm -f ilib/libdiagnose.a && /usr/bin/llvm-ar qc ilib/libdiagnose.a libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o && /usr/bin/llvm-ranlib ilib/libdiagnose.a && : [ 44% 184/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT libs/schema/CMakeFiles/sra.dir/SraSchema.cpp.o -MF libs/schema/CMakeFiles/sra.dir/SraSchema.cpp.o.d -o libs/schema/CMakeFiles/sra.dir/SraSchema.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/schema/SraSchema.cpp [ 44% 185/418] : && /usr/local/bin/cmake -E rm -f ilib/libsra.a && /usr/bin/llvm-ar qc ilib/libsra.a libs/schema/CMakeFiles/sra.dir/SraSchema.cpp.o && /usr/bin/llvm-ranlib ilib/libsra.a && : [ 44% 186/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o -MF libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o.d -o libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/search/agrep-dp.c [ 44% 187/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o -MF libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o.d -o libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/search/agrep-myers.c [ 44% 188/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -MF libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o.d -o libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/search/agrep-myersunltd.c [ 45% 189/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o -MF libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o.d -o libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/search/agrep-wumanber.c [ 45% 190/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-aho.c.o -MF libs/search/CMakeFiles/ksrch.dir/fgrep-aho.c.o.d -o libs/search/CMakeFiles/ksrch.dir/fgrep-aho.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/search/fgrep-aho.c [ 45% 191/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -MF libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o.d -o libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/search/fgrep-boyermoore.c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/search/fgrep-boyermoore.c:379:13: warning: variable 'skips' set but not used [-Wunused-but-set-variable] 379 | int32_t skips = 0; | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/search/fgrep-boyermoore.c:424:13: warning: variable 'skips' set but not used [-Wunused-but-set-variable] 424 | int32_t skips = 0; | ^ 2 warnings generated. [ 45% 192/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o -MF libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o.d -o libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/search/fgrep-dumb.c [ 46% 193/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o -MF libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o.d -o libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/search/nucstrstr.c [ 46% 194/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/search.c.o -MF libs/search/CMakeFiles/ksrch.dir/search.c.o.d -o libs/search/CMakeFiles/ksrch.dir/search.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/search/search.c [ 46% 195/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/sw-search.c.o -MF libs/search/CMakeFiles/ksrch.dir/sw-search.c.o.d -o libs/search/CMakeFiles/ksrch.dir/sw-search.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/search/sw-search.c [ 46% 196/418] : && /usr/local/bin/cmake -E rm -f ilib/libksrch.a && /usr/bin/llvm-ar qc ilib/libksrch.a libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o libs/search/CMakeFiles/ksrch.dir/fgrep-aho.c.o libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o libs/search/CMakeFiles/ksrch.dir/search.c.o libs/search/CMakeFiles/ksrch.dir/sw-search.c.o && /usr/bin/llvm-ranlib ilib/libksrch.a && : [ 47% 197/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o -MF libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o.d -o libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/general-writer/general-writer.cpp [ 47% 198/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -fPIC -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -MF libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o.d -o libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/general-writer/utf8-like-int-codec.c [ 47% 199/418] : && /usr/local/bin/cmake -E rm -f ilib/libgeneral-writer.a && /usr/bin/llvm-ar qc ilib/libgeneral-writer.a libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o && /usr/bin/llvm-ranlib ilib/libgeneral-writer.a && : [ 47% 200/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_LIBRARY -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIE -MD -MT libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o -MF libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o.d -o libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/general-writer/gw-dumper.cpp [ 48% 201/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=libs/general-writer/CMakeFiles/gw-dumper.dir/link.d libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o -o bin/gw-dumper -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib ilib/libgeneral-writer.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && : [ 48% 202/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/prefetch\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o -MF tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o.d -o tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/prefetch/kfile-no-q.c [ 48% 203/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/prefetch\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o -MF tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o.d -o tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/prefetch/PrfMain.c [ 48% 204/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/prefetch\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o -MF tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o.d -o tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/prefetch/prefetch.c [ 49% 205/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/prefetch\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o -MF tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o.d -o tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/prefetch/PrfRetrier.c [ 49% 206/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/prefetch\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o -MF tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o.d -o tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/prefetch/PrfOutFile.c [ 49% 207/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/prefetch/CMakeFiles/prefetch.dir/link.d tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o -o bin/prefetch -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib ilib/libascp.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f prefetch.3.2.1 && mv prefetch prefetch.3.2.1 && ln -f -s prefetch.3.2.1 prefetch.3 && ln -f -s prefetch.3 prefetch && ln -f -s sratools.3.2.1 prefetch-driver [ 49% 208/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o -MF tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o.d -o tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/configure.cpp [ 50% 209/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o -MF tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o.d -o tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/util.cpp [ 50% 210/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o -MF tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o.d -o tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/vdb-config.c [ 50% 211/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o -MF tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o.d -o tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/interactive2.cpp [ 50% 212/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -MF tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o.d -o tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/vdb-config-model.cpp [ 50% 213/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/dir_dlg.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/dir_dlg.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/dir_dlg.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/dir_dlg.c [ 51% 214/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/eventring.c [ 51% 215/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/file_dlg.c [ 51% 216/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/line_policy.c [ 51% 217/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/screen.c [ 52% 218/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/string_cache.c [ 52% 219/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui.c [ 52% 220/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_dlg.c [ 52% 221/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_dlg_helper.c [ 53% 222/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_menu.c [ 53% 223/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_palette.c [ 53% 224/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_std_dlg.c [ 53% 225/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_widget.c [ 54% 226/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_widget_button.c [ 54% 227/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_widget_checkbox.c [ 54% 228/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_widget_grid.c [ 54% 229/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_widget_inputline.c [ 55% 230/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_widget_label.c [ 55% 231/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_widget_progress.c [ 55% 232/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_widget_radiobox.c [ 55% 233/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_widget_spin_edit.c [ 55% 234/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_widget_string_list.c [ 56% 235/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_widget_tabhdr.c [ 56% 236/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/bsd/systui.c.o -MF tools/external/vdb-config/tui/CMakeFiles/tui.dir/bsd/systui.c.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui.dir/bsd/systui.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/bsd/systui.c [ 56% 237/418] : && /usr/local/bin/cmake -E rm -f ilib/libtui.a && /usr/bin/llvm-ar qc ilib/libtui.a tools/external/vdb-config/tui/CMakeFiles/tui.dir/dir_dlg.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o tools/external/vdb-config/tui/CMakeFiles/tui.dir/bsd/systui.c.o && /usr/bin/llvm-ranlib ilib/libtui.a && : [ 56% 238/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"libs/tui\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/.. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -MF tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o.d -o tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-config/tui/tui_cpp.cpp [ 57% 239/418] : && /usr/local/bin/cmake -E rm -f ilib/libtui_cpp.a && /usr/bin/llvm-ar qc ilib/libtui_cpp.a tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o && /usr/bin/llvm-ranlib ilib/libtui_cpp.a && : [ 57% 240/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/vdb-config/CMakeFiles/vdb-config.dir/link.d tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -o bin/vdb-config -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib ilib/libtui_cpp.a ilib/libtui.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f vdb-config.3.2.1 && mv vdb-config vdb-config.3.2.1 && ln -f -s vdb-config.3.2.1 vdb-config.3 && ln -f -s vdb-config.3 vdb-config && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/tools/external/vdb-config && /usr/local/bin/cmake -E copy /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/kfg/ncbi/default.kfg /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin/ncbi/default.kfg [ 57% 241/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o -MF tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o.d -o tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/factory.c [ 57% 242/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o -MF tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o.d -o tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/fasta_dump.c [ 58% 243/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o -MF tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o.d -o tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/core.c [ 58% 244/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o -MF tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o.d -o tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/fastq.c [ 58% 245/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/sra-dump/CMakeFiles/fastq-dump.dir/link.d tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o -o bin/fastq-dump -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f fastq-dump.3.2.1 && mv fastq-dump fastq-dump.3.2.1 && ln -f -s fastq-dump.3.2.1 fastq-dump.3 && ln -f -s fastq-dump.3 fastq-dump && ln -f -s sratools.3.2.1 fastq-dump-driver [ 58% 246/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o -MF tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o.d -o tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/factory.c [ 59% 247/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o -MF tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o.d -o tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/fasta_dump.c [ 59% 248/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o -MF tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o.d -o tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/core.c [ 59% 249/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o -MF tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o.d -o tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/sff.c [ 59% 250/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/sra-dump/CMakeFiles/sff-dump.dir/link.d tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o -o bin/sff-dump -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f sff-dump.3.2.1 && mv sff-dump sff-dump.3.2.1 && ln -f -s sff-dump.3.2.1 sff-dump.3 && ln -f -s sff-dump.3 sff-dump [ 60% 251/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o -MF tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o.d -o tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/factory.c [ 60% 252/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o -MF tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o.d -o tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/fasta_dump.c [ 60% 253/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o -MF tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o.d -o tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/core.c [ 60% 254/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o -MF tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o.d -o tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/illumina.c [ 61% 255/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/sra-dump/CMakeFiles/illumina-dump.dir/link.d tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o -o bin/illumina-dump -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f illumina-dump.3.2.1 && mv illumina-dump illumina-dump.3.2.1 && ln -f -s illumina-dump.3.2.1 illumina-dump.3 && ln -f -s illumina-dump.3 illumina-dump [ 61% 256/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o -MF tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o.d -o tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/factory.c [ 61% 257/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o -MF tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o.d -o tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/fasta_dump.c [ 61% 258/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o -MF tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o.d -o tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/core.c [ 61% 259/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o -MF tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o.d -o tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-dump/abi.c [ 62% 260/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/sra-dump/CMakeFiles/abi-dump.dir/link.d tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o -o bin/abi-dump -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f abi-dump.3.2.1 && mv abi-dump abi-dump.3.2.1 && ln -f -s abi-dump.3.2.1 abi-dump.3 && ln -f -s abi-dump.3 abi-dump [ 62% 261/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/dyn_string.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/dyn_string.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/dyn_string.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/dyn_string.c [ 62% 262/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/cmdline_cmn.c [ 62% 263/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/out_redir.c [ 63% 264/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/perf_log.c [ 63% 265/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/reref.c [ 63% 266/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/cg_tools.c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/cg_tools.c:505:13: warning: variable 'ref_pos' set but not used [-Wunused-but-set-variable] 505 | int32_t ref_pos = 0; /** ref_pos is tracked precisely - with every delta and consumption in cigar **/ | ^ 1 warning generated. [ 63% 267/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/report_deletes.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/report_deletes.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/report_deletes.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/report_deletes.c [ 64% 268/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/ref_regions.c [ 64% 269/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/4na_ascii.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/4na_ascii.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/4na_ascii.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/4na_ascii.c [ 64% 270/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker_0.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker_0.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker_0.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/ref_walker_0.c [ 64% 271/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/ref_walker.c [ 65% 272/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/walk_debug.c [ 65% 273/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/pileup_counters.c [ 65% 274/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/pileup_index.c [ 65% 275/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_indels.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_indels.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_indels.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/pileup_indels.c [ 66% 276/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/pileup_varcount.c [ 66% 277/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/pileup_stat.c [ 66% 278/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_v2.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_v2.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_v2.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/pileup_v2.c [ 66% 279/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o -MF tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o.d -o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/sra-pileup.c [ 66% 280/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/link.d tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/dyn_string.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/report_deletes.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/4na_ascii.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker_0.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_indels.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_v2.c.o tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o -o bin/sra-pileup -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f sra-pileup.3.2.1 && mv sra-pileup sra-pileup.3.2.1 && ln -f -s sra-pileup.3.2.1 sra-pileup.3 && ln -f -s sra-pileup.3 sra-pileup && ln -f -s sratools.3.2.1 sra-pileup-driver [ 67% 281/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/inputfiles.c [ 67% 282/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/perf_log.c [ 67% 283/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/rna_splice_log.c [ 67% 284/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/sam-dump-opts.c [ 68% 285/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/out_redir.c [ 68% 286/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/sam-hdr.c [ 68% 287/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr1.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr1.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr1.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/sam-hdr1.c [ 68% 288/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/matecache.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/matecache.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/matecache.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/matecache.c [ 69% 289/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/read_fkt.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/read_fkt.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/read_fkt.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/read_fkt.c [ 69% 290/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-aligned.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-aligned.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-aligned.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/sam-aligned.c [ 69% 291/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/sam-unaligned.c [ 69% 292/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/md_flag.c [ 70% 293/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/cg_tools.c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/cg_tools.c:505:13: warning: variable 'ref_pos' set but not used [-Wunused-but-set-variable] 505 | int32_t ref_pos = 0; /** ref_pos is tracked precisely - with every delta and consumption in cigar **/ | ^ 1 warning generated. [ 70% 294/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/sam-dump.c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/sam-dump.c:2454:14: warning: variable 'ref_pos' set but not used [-Wunused-but-set-variable] 2454 | int ref_pos=0; /** ref_pos is tracked precisely - with every delta and consumption in cigar **/ | ^ 1 warning generated. [ 70% 295/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/sam-dump3.c [ 70% 296/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o -MF tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o.d -o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-pileup/dyn_string.c [ 71% 297/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/sra-pileup/CMakeFiles/sam-dump.dir/link.d tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr1.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/matecache.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/read_fkt.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-aligned.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o -o bin/sam-dump -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f sam-dump.3.2.1 && mv sam-dump sam-dump.3.2.1 && ln -f -s sam-dump.3.2.1 sam-dump.3 && ln -f -s sam-dump.3 sam-dump && ln -f -s sratools.3.2.1 sam-dump-driver [ 71% 298/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/helper.c [ 71% 299/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/arg_helper.c [ 71% 300/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/dflt_defline.c [ 72% 301/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/tool_ctx.c [ 72% 302/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/inspector.c [ 72% 303/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/sbuffer.c [ 72% 304/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/err_msg.c [ 72% 305/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/file_tools.c [ 73% 306/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/var_fmt.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/var_fmt.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/var_fmt.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/var_fmt.c [ 73% 307/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/flex_printer.c [ 73% 308/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/temp_dir.c [ 73% 309/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/progress_thread.c [ 74% 310/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/cleanup_task.c [ 74% 311/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/index.c [ 74% 312/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_writer.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_writer.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_writer.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/lookup_writer.c [ 74% 313/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/lookup_reader.c [ 75% 314/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_file_list.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_file_list.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_file_list.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/locked_file_list.c [ 75% 315/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/locked_value.c [ 75% 316/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/file_printer.c [ 75% 317/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/merge_sorter.c [ 76% 318/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/sorter.c [ 76% 319/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/cmn_iter.c [ 76% 320/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/raw_read_iter.c [ 76% 321/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/special_iter.c [ 77% 322/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/fq_seq_ua_iter.c [ 77% 323/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/fq_seq_csra_iter.c [ 77% 324/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/align_iter.c [ 77% 325/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/simple_fasta_iter.c [ 77% 326/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/db_join.c [ 78% 327/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/tbl_join.c [ 78% 328/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/temp_registry.c [ 78% 329/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/copy_machine.c [ 78% 330/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/multi_writer.c [ 79% 331/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/concatenator.c [ 79% 332/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/ref_inventory.c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/ref_inventory.c:912:22: warning: variable 'base_cnt' set but not used [-Wunused-but-set-variable] 912 | uint64_t base_cnt = 0; | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/ref_inventory.c:913:22: warning: variable 'chunks' set but not used [-Wunused-but-set-variable] 913 | uint32_t chunks = 0; | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/ref_inventory.c:943:22: warning: variable 'base_cnt' set but not used [-Wunused-but-set-variable] 943 | uint64_t base_cnt = 0; | ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/ref_inventory.c:944:22: warning: variable 'chunks' set but not used [-Wunused-but-set-variable] 944 | uint32_t chunks = 0; | ^ 4 warnings generated. [ 79% 333/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -MF tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o.d -o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/fasterq-dump/fasterq-dump.c [ 79% 334/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/link.d tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/var_fmt.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_writer.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_file_list.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -o bin/fasterq-dump -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm ilib/libksrch.a && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f fasterq-dump.3.2.1 && mv fasterq-dump fasterq-dump.3.2.1 && ln -f -s fasterq-dump.3.2.1 fasterq-dump.3 && ln -f -s fasterq-dump.3 fasterq-dump && ln -f -s sratools.3.2.1 fasterq-dump-driver [ 80% 335/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -MF tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o.d -o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-dump/vdb-dump-context.c [ 80% 336/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -MF tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o.d -o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-dump/vdb-dump-coldefs.c [ 80% 337/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -MF tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o.d -o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-dump/vdb-dump-tools.c [ 80% 338/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o -MF tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o.d -o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-dump/vdb-dump-str.c [ 81% 339/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o -MF tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o.d -o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-dump/vdb-dump-helper.c [ 81% 340/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -MF tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o.d -o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-dump/vdb-dump-formats.c [ 81% 341/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -MF tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o.d -o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-dump/vdb-dump-redir.c [ 81% 342/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -MF tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o.d -o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-dump/vdb-dump-fastq.c [ 82% 343/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -MF tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o.d -o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-dump/vdb-dump-view-spec.c [ 82% 344/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o -MF tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o.d -o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-dump/vdb-dump-inspect.c [ 82% 345/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o -MF tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o.d -o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-dump/vdb_info.c [ 82% 346/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o -MF tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o.d -o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-dump/vdb-dump.c [ 83% 347/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/link.d tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o -o bin/vdb-dump -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f vdb-dump.3.2.1 && mv vdb-dump vdb-dump.3.2.1 && ln -f -s vdb-dump.3.2.1 vdb-dump.3 && ln -f -s vdb-dump.3 vdb-dump && ln -f -s sratools.3.2.1 vdb-dump-driver [ 83% 348/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o -MF tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o.d -o tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-validate/main.c [ 83% 349/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o -MF tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o.d -o tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-validate/vdb-validate.c [ 83% 350/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -MF tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o.d -o tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-validate/check-redact.c [ 83% 351/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/link.d tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -o bin/vdb-validate -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f vdb-validate.3.2.1 && mv vdb-validate vdb-validate.3.2.1 && ln -f -s vdb-validate.3.2.1 vdb-validate.3 && ln -f -s vdb-validate.3 vdb-validate [ 84% 352/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -MF tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o.d -o tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-validate/check-corrupt.cpp [ 84% 353/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/link.d tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -o bin/check-corrupt -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f check-corrupt.3.2.1 && mv check-corrupt check-corrupt.3.2.1 && ln -f -s check-corrupt.3.2.1 check-corrupt.3 && ln -f -s check-corrupt.3 check-corrupt [ 84% 354/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -MF tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o.d -o tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-decrypt/vdb-decrypt.c [ 84% 355/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o -MF tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o.d -o tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-decrypt/shared.c [ 85% 356/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/link.d tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o -o bin/vdb-decrypt -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f vdb-decrypt.3.2.1 && mv vdb-decrypt vdb-decrypt.3.2.1 && ln -f -s vdb-decrypt.3.2.1 vdb-decrypt.3 && ln -f -s vdb-decrypt.3 vdb-decrypt [ 85% 357/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -MF tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o.d -o tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-decrypt/vdb-encrypt.c [ 85% 358/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o -MF tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o.d -o tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/vdb-decrypt/shared.c [ 85% 359/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/link.d tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o -o bin/vdb-encrypt -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f vdb-encrypt.3.2.1 && mv vdb-encrypt vdb-encrypt.3.2.1 && ln -f -s vdb-encrypt.3.2.1 vdb-encrypt.3 && ln -f -s vdb-encrypt.3 vdb-encrypt [ 86% 360/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/srapath\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o -MF tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o.d -o tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/srapath/helper.c [ 86% 361/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/srapath\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o -MF tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o.d -o tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/srapath/line_iter.c [ 86% 362/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/srapath\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o -MF tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o.d -o tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/srapath/repository-mgr.c [ 86% 363/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/srapath\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/services.c.o -MF tools/external/srapath/CMakeFiles/srapath.dir/services.c.o.d -o tools/external/srapath/CMakeFiles/srapath.dir/services.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/srapath/services.c [ 87% 364/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/srapath\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/cgi_request.c.o -MF tools/external/srapath/CMakeFiles/srapath.dir/cgi_request.c.o.d -o tools/external/srapath/CMakeFiles/srapath.dir/cgi_request.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/srapath/cgi_request.c [ 87% 365/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/srapath\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o -MF tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o.d -o tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/srapath/srapath.c [ 87% 366/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/srapath/CMakeFiles/srapath.dir/link.d tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o tools/external/srapath/CMakeFiles/srapath.dir/services.c.o tools/external/srapath/CMakeFiles/srapath.dir/cgi_request.c.o tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o -o bin/srapath -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f srapath.3.2.1 && mv srapath srapath.3.2.1 && ln -f -s srapath.3.2.1 srapath.3 && ln -f -s srapath.3 srapath && ln -f -s sratools.3.2.1 srapath-driver [ 87% 367/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-stat\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o -MF tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o.d -o tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-stat/assembly-statistics.c [ 88% 368/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-stat\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra.c.o -MF tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra.c.o.d -o tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-stat/sra.c [ 88% 369/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-stat\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra-stat.c.o -MF tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra-stat.c.o.d -o tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra-stat.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-stat/sra-stat.c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-stat/sra-stat.c:3263:22: warning: unused variable 'rc_fmt' [-Wunused-variable] 3263 | rc_t rc_fmt = formatLoadTime(ctx->info->loadTimestamp, buf, sizeof(buf), &sz); | ^~~~~~ 1 warning generated. [ 88% 370/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/sra-stat/CMakeFiles/sra-stat.dir/link.d tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra.c.o tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra-stat.c.o -o bin/sra-stat -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib ilib/libloader.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f sra-stat.3.2.1 && mv sra-stat sra-stat.3.2.1 && ln -f -s sra-stat.3.2.1 sra-stat.3 && ln -f -s sra-stat.3 sra-stat [ 88% 371/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/ngs-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -MF tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o.d -o tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/ngs-pileup/ngs-pileup.cpp [ 88% 372/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/ngs-pileup\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ncbi/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o -MF tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o.d -o tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/ngs-pileup/main.cpp [ 89% 373/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/link.d tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o -o bin/ngs-pileup -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib lib/libncbi-ngs-c++.a lib/libngs-c++.a ilib/libngs.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f ngs-pileup.3.2.1 && mv ngs-pileup ngs-pileup.3.2.1 && ln -f -s ngs-pileup.3.2.1 ngs-pileup.3 && ln -f -s ngs-pileup.3 ngs-pileup [ 89% 374/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/util\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/rcexplain/CMakeFiles/rcexplain.dir/rcexplain.c.o -MF tools/external/rcexplain/CMakeFiles/rcexplain.dir/rcexplain.c.o.d -o tools/external/rcexplain/CMakeFiles/rcexplain.dir/rcexplain.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/rcexplain/rcexplain.c [ 89% 375/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/rcexplain/CMakeFiles/rcexplain.dir/link.d tools/external/rcexplain/CMakeFiles/rcexplain.dir/rcexplain.c.o -o bin/rcexplain -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f rcexplain.3.2.1 && mv rcexplain rcexplain.3.2.1 && ln -f -s rcexplain.3.2.1 rcexplain.3 && ln -f -s rcexplain.3 rcexplain [ 89% 376/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/util\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o -MF tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o.d -o tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/kdbmeta/kdbmeta.c [ 90% 377/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/link.d tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o -o bin/kdbmeta -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-wvdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f kdbmeta.3.2.1 && mv kdbmeta kdbmeta.3.2.1 && ln -f -s kdbmeta.3.2.1 kdbmeta.3 && ln -f -s kdbmeta.3 kdbmeta [ 90% 378/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/align-info\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/align-info/CMakeFiles/align-info.dir/align-info.c.o -MF tools/external/align-info/CMakeFiles/align-info.dir/align-info.c.o.d -o tools/external/align-info/CMakeFiles/align-info.dir/align-info.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/align-info/align-info.c [ 90% 379/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/align-info/CMakeFiles/align-info.dir/link.d tools/external/align-info/CMakeFiles/align-info.dir/align-info.c.o -o bin/align-info -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f align-info.3.2.1 && mv align-info align-info.3.2.1 && ln -f -s align-info.3.2.1 align-info.3 && ln -f -s align-info.3 align-info [ 90% 380/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o -MF tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o.d -o tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/ref-variation/common.cpp [ 91% 381/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o -MF tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o.d -o tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/ref-variation/helper.cpp [ 91% 382/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -MF tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o.d -o tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/ref-variation/ref-variation.cpp [ 91% 383/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/ref-variation/CMakeFiles/ref-variation.dir/link.d tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -o bin/ref-variation -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib ilib/libtk-version.a -lkapp ilib/libngs-vdb.a lib/libncbi-ngs.a ilib/libloader.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a ilib/libksrch.a && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f ref-variation.3.2.1 && mv ref-variation ref-variation.3.2.1 && ln -f -s ref-variation.3.2.1 ref-variation.3 && ln -f -s ref-variation.3 ref-variation [ 91% 384/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/var-expand\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o -MF tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o.d -o tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/ref-variation/common.cpp [ 92% 385/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/var-expand\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o -MF tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o.d -o tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/ref-variation/helper.cpp [ 92% 386/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/var-expand\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o -MF tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o.d -o tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/ref-variation/var-expand.cpp [ 92% 387/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/ref-variation/CMakeFiles/var-expand.dir/link.d tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o -o bin/var-expand -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib ilib/libtk-version.a -lkapp ilib/libngs-vdb.a lib/libncbi-ngs.a ilib/libloader.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a ilib/libksrch.a && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f var-expand.3.2.1 && mv var-expand var-expand.3.2.1 && ln -f -s var-expand.3.2.1 var-expand.3 && ln -f -s var-expand.3 var-expand [ 92% 388/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o -MF tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o.d -o tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-search/main.cpp [ 93% 389/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o -MF tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o.d -o tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-search/searchblock.cpp [ 93% 390/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -MF tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o.d -o tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-search/fragmentmatchiterator.cpp [ 93% 391/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -MF tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o.d -o tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-search/blobmatchiterator.cpp [ 93% 392/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -MF tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o.d -o tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-search/referencematchiterator.cpp [ 94% 393/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-search\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -MF tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o.d -o tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-search/vdb-search.cpp [ 94% 394/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/sra-search/CMakeFiles/sra-search.dir/link.d tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -o bin/sra-search -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib ilib/libngs-vdb.a lib/libncbi-ngs.a ilib/libtk-version.a -Wl,-Bstatic -lkapp -Wl,-Bdynamic /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a ilib/libksrch.a && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f sra-search.3.2.1 && mv sra-search sra-search.3.2.1 && ln -f -s sra-search.3.2.1 sra-search.3 && ln -f -s sra-search.3 sra-search [ 94% 395/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/test-sra\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/test-sra/. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/test-sra/CMakeFiles/test-sra.dir/test-sra.c.o -MF tools/external/test-sra/CMakeFiles/test-sra.dir/test-sra.c.o.d -o tools/external/test-sra/CMakeFiles/test-sra.dir/test-sra.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/test-sra/test-sra.c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/test-sra/test-sra.c:2509:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] 2509 | int n = 0; | ^ 1 warning generated. [ 94% 396/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/test-sra\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/test-sra/. -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/test-sra/CMakeFiles/test-sra.dir/unix/PrintOS.c.o -MF tools/external/test-sra/CMakeFiles/test-sra.dir/unix/PrintOS.c.o.d -o tools/external/test-sra/CMakeFiles/test-sra.dir/unix/PrintOS.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/test-sra/unix/PrintOS.c [ 94% 397/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/test-sra/CMakeFiles/test-sra.dir/link.d tools/external/test-sra/CMakeFiles/test-sra.dir/test-sra.c.o tools/external/test-sra/CMakeFiles/test-sra.dir/unix/PrintOS.c.o -o bin/test-sra -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib ilib/libascp.a ilib/libdiagnose.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f test-sra.3.2.1 && mv test-sra test-sra.3.2.1 && ln -f -s test-sra.3.2.1 test-sra.3 && ln -f -s test-sra.3 test-sra [ 95% 398/418] /usr/local/libexec/ccache/cc -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/cache-mgr\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c11 -MD -MT tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/cache-mgr.c.o -MF tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/cache-mgr.c.o.d -o tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/cache-mgr.c.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/cache-mgr/cache-mgr.c [ 95% 399/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/link.d tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/cache-mgr.c.o -o bin/cache-mgr -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f cache-mgr.3.2.1 && mv cache-mgr cache-mgr.3.2.1 && ln -f -s cache-mgr.3.2.1 cache-mgr.3 && ln -f -s cache-mgr.3 cache-mgr [ 95% 400/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/sratools.cpp [ 95% 401/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/config.cpp [ 96% 402/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/command-line.cpp [ 96% 403/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/run-source.cpp [ 96% 404/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/proc.cpp [ 96% 405/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/uuid.cpp [ 97% 406/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/accession.cpp [ 97% 407/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/service.cpp [ 97% 408/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/json-parse.cpp [ 97% 409/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/SDL-response.cpp [ 98% 410/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/tool-args.cpp [ 98% 411/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/build-version.cpp [ 98% 412/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/file-path.posix.cpp [ 98% 413/418] /usr/local/libexec/ccache/c++ -DBSD -DBUILD_PATH=\"/wrkdirs/usr/ports/biology/sra-tools/work/.build/bin\" -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -MF tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o.d -o tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/driver-tool/proc.posix.cpp [ 99% 414/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/driver-tool/CMakeFiles/sratools.dir/link.d tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -o bin/sratools -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f sratools.3.2.1 && mv sratools sratools.3.2.1 && ln -f -s sratools.3.2.1 sratools.3 && ln -f -s sratools.3 sratools [ 99% 415/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-info\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o -MF tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o.d -o tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-info/main.cpp [ 99% 416/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-info\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o -MF tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o.d -o tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-info/sra-info.cpp [ 99% 417/418] /usr/local/libexec/ccache/c++ -DBSD -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D__mod__=\"tools/sra-info\" -Dx86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/cc/clang/x86_64 -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/bsd -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/interfaces/os/unix -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-sdk -I/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/libs/inc -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o -MF tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o.d -o tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o -c /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/tools/external/sra-info/formatter.cpp [100% 418/418] : && /usr/local/libexec/ccache/c++ -Wall -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-unused-function -Wno-tautological-undefined-compare -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -Xlinker --dependency-file=tools/external/sra-info/CMakeFiles/sra-info.dir/link.d tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o -o bin/sra-info -L/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib -Wl,-rpath,/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libkapp.a ilib/libtk-version.a /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ncbi-vdb/build/lib/libncbi-vdb.a -lpthread -ldl -lm && cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/bin && rm -f sra-info.3.2.1 && mv sra-info sra-info.3.2.1 && ln -f -s sra-info.3.2.1 sra-info.3 && ln -f -s sra-info.3 sra-info =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> sra-tools-3.2.1 depends on package: hdf5>0 - not found ===> Installing existing package /packages/All/hdf5-1.12.2_2,1.pkg [pkg-builder.dan.net.uk] Installing hdf5-1.12.2_2,1... [pkg-builder.dan.net.uk] Extracting hdf5-1.12.2_2,1: .......... done ===> sra-tools-3.2.1 depends on package: hdf5>0 - found ===> Returning to build of sra-tools-3.2.1 ===> sra-tools-3.2.1 depends on file: /usr/local/openjdk21/bin/java - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for sra-tools-3.2.1 ===> Generating temporary packing list [ 25% 1/4] cd /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java && /usr/local/bin/javadoc -d /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc -sourcepath "/wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java" gov.nih.nlm.ncbi.ngs ngs Loading source files for package gov.nih.nlm.ncbi.ngs... Loading source files for package ngs... Constructing Javadoc information... Building index for all the packages and classes... Standard Doclet version 21.0.7+6-1 Building tree for all the packages and classes... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Alignment.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:140: warning: no comment static int all = primaryAlignment | secondaryAlignment; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:176: warning: no comment static int clipLeft = 0; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:177: warning: no comment static int clipRight = 1; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:132: warning: no comment static int maxMapQuality = 8; // pass alignments with mappingQuality <= param ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:131: warning: no comment static int minMapQuality = 4; // pass alignments with mappingQuality >= param ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:133: warning: no comment static int noWraparound = 16; // do not include leading wrapped around alignments to circular references ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:130: warning: no comment static int passDuplicates = 2; // either a PCR or optical duplicate ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:129: warning: no comment static int passFailed = 1; // reads rejected due to platform/vendor quality criteria ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:138: warning: no comment static int primaryAlignment = 1; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:139: warning: no comment static int secondaryAlignment = 2; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Alignment.java:134: warning: no comment static int startWithinSlice = 32; // change slice intersection criteria so that start pos is within slice ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/AlignmentIterator.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ErrorMsg.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ErrorMsg.java:38: warning: no main description * @return What went wrong ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ErrorMsg.java:49: warning: no comment public ErrorMsg () ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ErrorMsg.java:53: warning: no comment public ErrorMsg ( String message ) ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ErrorMsg.java:58: warning: no comment public ErrorMsg ( ErrorMsg obj ) ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Fragment.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/FragmentIterator.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/LibDependencies.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:29: warning: no comment public class LibDependencies { ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:34: warning: no comment public final static String NCBI_VDB = "ncbi-ngs"; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:30: warning: no comment public final static String NGS_SDK = "ngs-sdk"; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:29: warning: use of default constructor, which does not provide a comment public class LibDependencies { ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/NGS.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:40: warning: no comment public class NGS ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:40: warning: use of default constructor, which does not provide a comment public class NGS ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:133: warning: no comment public static void main(String[] args) { ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Package.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Package.java:37: warning: no main description * @return package version as a 1..3 part string ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Package.java:33: warning: use of default constructor, which does not provide a comment public class Package ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Pileup.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Pileup.java:58: warning: no main description * @return base at current Reference position ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupEvent.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:118: warning: no comment static int alignment_minus_strand = 0x20; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:116: warning: no comment static int alignment_start = 0x80; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:117: warning: no comment static int alignment_stop = 0x40; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:98: warning: no comment static int deletion = 2; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:104: warning: no comment static int insertion = 0x08; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:112: warning: no comment static int insertion_before_deletion = insertion | deletion; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:107: warning: no comment static int insertion_before_match = insertion | match; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:108: warning: no comment static int insertion_before_mismatch = insertion | mismatch; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:180: warning: no comment static int intron_minus = 2; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:179: warning: no comment static int intron_plus = 1; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:181: warning: no comment static int intron_unknown = 3; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:97: warning: no comment static int mismatch = 1; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:191: warning: no comment static int read_gap = 5; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:186: warning: no comment static int read_overlap = 4; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/PileupEvent.java:113: warning: no comment static int replacement = insertion_before_deletion; ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupEventIterator.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupIterator.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Read.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Read.java:35: warning: no comment public interface Read ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Read.java:79: warning: no comment static int aligned = fullyAligned | partiallyAligned; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Read.java:81: warning: no comment static int all = aligned | unaligned; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Read.java:78: warning: no comment static int partiallyAligned = 2; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Read.java:80: warning: no comment static int unaligned = 4; ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadCollection.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ReadCollection.java:88: warning: no main description * @param spec the name of a contained read group ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ReadCollection.java:121: warning: no main description * @param spec the name of a contained Reference ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadGroup.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadGroupIterator.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadIterator.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/ReadIterator.java:34: warning: no comment public interface ReadIterator ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Reference.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ReferenceIterator.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/ReferenceSequence.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/Statistics.html... /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Statistics.java:41: warning: no comment static int int64 = 2; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Statistics.java:43: warning: no comment static int real = 4; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Statistics.java:40: warning: no comment static int string = 1; ^ /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java/ngs/Statistics.java:42: warning: no comment static int uint64 = 3; ^ Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-summary.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-tree.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/package-summary.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/ngs/package-tree.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/constant-values.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/serialized-form.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/overview-tree.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/index.html... Building index for all classes... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/allclasses-index.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/allpackages-index.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/index-all.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/search.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/overview-summary.html... Generating /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc/help-doc.html... 52 warnings [ 50% 3/4] cd /wrkdirs/usr/ports/biology/sra-tools/work/sra-tools-3.2.1/ngs/ngs-java && sh -c /usr/local/bin/jar\ -cf\ /wrkdirs/usr/ports/biology/sra-tools/work/.build/lib/ngs-src.jar\ \ ngs/ErrorMsg.java\ ngs/Statistics.java\ ngs/Fragment.java\ ngs/FragmentIterator.java\ ngs/Read.java\ ngs/ReadIterator.java\ ngs/ReadGroup.java\ ngs/ReadGroupIterator.java\ ngs/Alignment.java\ ngs/AlignmentIterator.java\ ngs/PileupEvent.java\ ngs/PileupEventIterator.java\ ngs/Pileup.java\ ngs/PileupIterator.java\ ngs/Reference.java\ ngs/ReferenceIterator.java\ ngs/ReadCollection.java\ ngs/Package.java\ ngs/itf/Refcount.java\ ngs/itf/StatisticsItf.java\ ngs/itf/FragmentItf.java\ ngs/itf/FragmentIteratorItf.java\ ngs/itf/ReadItf.java\ ngs/itf/ReadIteratorItf.java\ ngs/itf/ReadGroupItf.java\ ngs/itf/ReadGroupIteratorItf.java\ ngs/itf/AlignmentItf.java\ ngs/itf/AlignmentIteratorItf.java\ ngs/itf/PileupEventItf.java\ ngs/itf/PileupEventIteratorItf.java\ ngs/itf/PileupItf.java\ ngs/itf/PileupIteratorItf.java\ ngs/itf/ReferenceItf.java\ ngs/itf/ReferenceIteratorItf.java\ ngs/itf/ReadCollectionItf.java\ gov/nih/nlm/ncbi/ngs/DownloadManager.java\ gov/nih/nlm/ncbi/ngs/FileCreator.java\ gov/nih/nlm/ncbi/ngs/HttpManager.java\ gov/nih/nlm/ncbi/ngs/LibDependencies.java\ gov/nih/nlm/ncbi/ngs/LibManager.java\ gov/nih/nlm/ncbi/ngs/LibPathIterator.java\ gov/nih/nlm/ncbi/ngs/LibVersionChecker.java\ gov/nih/nlm/ncbi/ngs/LMProperties.java\ gov/nih/nlm/ncbi/ngs/Logger.java\ gov/nih/nlm/ncbi/ngs/Manager.java\ gov/nih/nlm/ncbi/ngs/NGS.java\ gov/nih/nlm/ncbi/ngs/Version.java\ gov/nih/nlm/ncbi/ngs/error/LibraryLoadError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryNotFoundError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryIncompatibleVersionError.java\ gov/nih/nlm/ncbi/ngs/error/cause/ConnectionProblemCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/DownloadDisabledCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/InvalidLibraryCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/JvmErrorCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/LibraryLoadCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/OutdatedJarCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/PrereleaseReqLibCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/UnsupportedArchCause.java [ 75% 3/4] cd /wrkdirs/usr/ports/biology/sra-tools/work/.build/ngs/ngs-java/javadoc/ngs-doc && sh -c /usr/local/bin/jar\ -cf\ /wrkdirs/usr/ports/biology/sra-tools/work/.build/lib/ngs-doc.jar\ . [ 75% 4/4] cd /wrkdirs/usr/ports/biology/sra-tools/work/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" Updating /etc/profile.d/sra-tools.sh Updating /etc/profile.d/sra-tools.csh -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libncbi-ngs-c++.a.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libncbi-ngs-c++.a.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libncbi-ngs-c++.a -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libncbi-ngs-c++-static.a -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ncbi-vdb/NGS.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/FragTest.cpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/AlignTest.cpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/AlignSliceTest.cpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/PileupTest.cpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/RefTest.cpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/DumpReferenceFASTA.cpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/expected.txt -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/Makefile -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/README.txt -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libngs-c++.a.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libngs-c++.a.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libngs-c++.a -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libngs-c++-static.a -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libngs-c++.so.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libngs-c++.so.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libngs-c++.so -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libncbi-ngs.a.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libncbi-ngs.a.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libncbi-ngs.a -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libncbi-ngs-static.a -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libncbi-ngs.so.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libncbi-ngs.so.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/libncbi-ngs.so -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/Statistics.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/PileupEvent.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/ReferenceIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/ReadGroup.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/Pileup.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/Alignment.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/win -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/win/stdbool.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/win/atomic32.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/PileupEventIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/Fragment.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/ReadGroupIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/FragmentItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/ReadCollectionItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/ReferenceSequenceItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/Refcount.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/AlignmentItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/StringItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/defs.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/PileupItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/ReadItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/PileupEventItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/ReferenceItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/StatisticsItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/ErrorMsg.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/adapter/ReadGroupItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/ReferenceSequence.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/Read.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/AlignmentIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/unix -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/unix/arm64 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/unix/arm64/atomic32.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/unix/fat86 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/unix/fat86/atomic32.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/unix/x86_64 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/unix/x86_64/atomic32.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/unix/i386 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/unix/i386/atomic32.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/StringRef.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/FragmentIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/ReadIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/Statistics.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/PileupEvent.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/ReferenceIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/ReadGroup.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/Pileup.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/Alignment.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/PileupEventIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/Fragment.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/ReadGroupIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/ReferenceSequence.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/Read.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/AlignmentIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/StringRef.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/FragmentIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/ReadIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/Reference.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/PileupIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/ReadCollection.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/inl/Package.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/Reference.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/PileupIterator.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/FragmentItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/VTable.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/PackageItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/StatisticsItf.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ReadCollectionItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ReferenceSequenceItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/PileupItf.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/Refcount.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/AlignmentItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/StringItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/defs.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/PileupItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/PileupEventItf.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ReadItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ReadCollectionItf.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ErrBlock.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/PileupEventItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/AlignmentItf.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ReferenceItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ErrBlock.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ReferenceItf.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ReferenceSequenceItf.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/StringItf.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/Refcount.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ReadGroupItf.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/FragmentItf.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/StatisticsItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/VTable.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ErrorMsg.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ReadGroupItf.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/itf/ReadItf.h -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/ReadCollection.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/Package.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/include/ngs/ErrorMsg.hpp -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/jar/ngs-java.jar -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/java/examples/AlignTest.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/java/examples/AlignSliceTest.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/java/examples/FragTest.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/java/examples/PileupTest.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/java/examples/RefTest.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/java/examples/ReadGroupTest.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/java/examples/DumpReferenceFASTA.java -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/java/Makefile -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/java/README.txt -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/java/expected.txt -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/jar/ngs-examples.jar -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/search-page.js -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/package-search-index.js -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/Pileup.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/PileupEvent.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/Fragment.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/package-tree.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/ReadGroup.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/Package.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/Statistics.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/ReadIterator.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/PileupEventIterator.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/ReferenceIterator.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/FragmentIterator.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/ReadCollection.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/AlignmentIterator.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/ErrorMsg.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/package-summary.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/PileupIterator.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/Reference.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/ReadGroupIterator.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/ReferenceSequence.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/Read.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/ngs/Alignment.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/index.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/type-search-index.js -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/allpackages-index.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/serialized-form.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/element-list -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/index-all.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/copy.svg -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/help-doc.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/module-search-index.js -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/constant-values.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/script.js -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/search.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/member-search-index.js -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/allclasses-index.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/stylesheet.css -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/search.js -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/overview-summary.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/gov -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/gov/nih -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/gov/nih/nlm -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/gov/nih/nlm/ncbi -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-tree.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-summary.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/NGS.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/LibDependencies.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/tag-search-index.js -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/link.svg -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/legal -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/legal/jquery.md -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/legal/ADDITIONAL_LICENSE_INFO -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/legal/LICENSE -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/legal/ASSEMBLY_EXCEPTION -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/legal/jqueryUI.md -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/resources -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/resources/glass.png -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/resources/x.png -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/overview-tree.html -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/script-dir -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/script-dir/jquery-3.7.1.min.js -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/script-dir/jquery-ui.min.css -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/script-dir/jquery-ui.min.js -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/jar/ngs-doc.jar -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/jar/ngs-src.jar -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/python/AlignTest.py -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/python/AlignSliceTest.py -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/python/FragTest.py -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/python/PileupTest.py -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/python/RefTest.py -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/python/expected.txt -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/python/Makefile -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/examples/sra-tools/python/README.txt -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/prefetch -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/prefetch.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/prefetch-orig.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/prefetch.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-config.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-config.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-config -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/fastq-dump -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/fastq-dump.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/fastq-dump-orig.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/fastq-dump.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sff-dump.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sff-dump.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sff-dump -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/illumina-dump.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/illumina-dump.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/illumina-dump -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/abi-dump.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/abi-dump.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/abi-dump -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-pileup -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-pileup.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-pileup-orig.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-pileup.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sam-dump -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sam-dump.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sam-dump-orig.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sam-dump.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/fasterq-dump -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/fasterq-dump.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/fasterq-dump-orig.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/fasterq-dump.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-dump -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-dump.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-dump-orig.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-dump.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-validate.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-validate.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-validate -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/check-corrupt.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/check-corrupt.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/check-corrupt -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-decrypt.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-decrypt.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-decrypt -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-encrypt.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-encrypt.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/vdb-encrypt -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/srapath -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/srapath.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/srapath-orig.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/srapath.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-stat.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-stat.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-stat -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/ngs-pileup.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/ngs-pileup.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/ngs-pileup -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/rcexplain.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/rcexplain.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/rcexplain -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/kdbmeta.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/kdbmeta.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/kdbmeta -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/align-info.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/align-info.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/align-info -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/ref-variation.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/ref-variation.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/ref-variation -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/var-expand.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/var-expand.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/var-expand -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-search.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-search.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-search -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/test-sra.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/test-sra.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/test-sra -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/cache-mgr.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/cache-mgr.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/cache-mgr -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sratools.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sratools.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sratools -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-info.3.2.1 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-info.3 -- Installing: /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/sra-info /usr/bin/strip /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/bin/*.3.2.1 /usr/bin/strip /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/lib64/*.3.2.1 /bin/mv /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/script-dir/jquery-[0-9]*.min.js /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/script-dir/jquery.min.js ====> Compressing man pages (compress-man) ===> Installing ldconfig configuration file =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-02T15:48:09+0000' 'PKG_NOTE_ports_top_git_hash=5529c5919b' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=a57f4b8dea' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for sra-tools-3.2.1 ===> Building sra-tools-3.2.1 pkg-static: Unable to access file /wrkdirs/usr/ports/biology/sra-tools/work/stage/usr/local/share/javadoc/ngs-doc/jquery-ui.overrides.css:No such file or directory *** Error code 1 Stop. make: stopped in /usr/ports/biology/sra-tools =>> Cleaning up wrkdir ===> Cleaning for sra-tools-3.2.1 build of biology/sra-tools | sra-tools-3.2.1 ended at Fri May 2 16:56:08 BST 2025 build time: 00:07:59 !!! build failure encountered !!!