=>> Building science/PETSc build started at Thu May 1 08:50:13 BST 2025 port directory: /usr/ports/science/PETSc package name: PETSc-3.22.4 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2798 Apr 5 02:48 /usr/ports/science/PETSc/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: a580137bf5 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 06 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/06/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for PETSc-3.22.4: METIS=on: Enable metis support for graph partitioning algorithms ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --with-shared-libraries=1 --with-mpi-dir=/usr/local --with-python=1 --with-python-pkg-config=/usr/local/libdata/pkgconfig FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" FFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -msse2" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -msse2" CPPFLAGS="" AR=/usr/local/bin/ar RANLIB=/usr/local/bin/ranlib MAKEFLAGS="" LDFLAGS=" /usr/local/lib/libmpi.so -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="" --with-64-bit-indices --with-metis=1 --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- BLA_VENDOR="Generic" F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" MAKE=/usr/local/bin/gmake PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/PETSc/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/PETSc/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/PETSc/work/.cache HOME=/wrkdirs/usr/ports/science/PETSc/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/PETSc/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/PETSc/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/PETSc/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/PETSc/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/PETSc/work/.cache HOME=/wrkdirs/usr/ports/science/PETSc/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/PETSc/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/PETSc/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" /usr/local/lib/libmpi.so -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- SHLIB=3.22.4 SHL=3.22 PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/PETSc" EXAMPLESDIR="share/examples/PETSc" DATADIR="share/petsc" WWWDIR="www/PETSc" ETCDIR="etc/PETSc" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/petsc DOCSDIR=/usr/local/share/doc/PETSc EXAMPLESDIR=/usr/local/share/examples/PETSc WWWDIR=/usr/local/www/PETSc ETCDIR=/usr/local/etc/PETSc --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> PETSc-3.22.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> PETSc-3.22.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of PETSc-3.22.4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by PETSc-3.22.4 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by PETSc-3.22.4 for building => SHA256 Checksum OK for petsc-3.22.4.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by PETSc-3.22.4 for building ===> Extracting for PETSc-3.22.4 => SHA256 Checksum OK for petsc-3.22.4.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for PETSc-3.22.4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> PETSc-3.22.4 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.6.pkg [pkg-builder.dan.net.uk] Installing cmake-core-3.31.6... [pkg-builder.dan.net.uk] `-- Installing expat-2.7.1... [pkg-builder.dan.net.uk] `-- Extracting expat-2.7.1: .......... done [pkg-builder.dan.net.uk] `-- Installing jsoncpp-1.9.6_1... [pkg-builder.dan.net.uk] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg-builder.dan.net.uk] `-- Installing libidn2-2.3.8... [pkg-builder.dan.net.uk] | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] | `-- Installing libunistring-1.3... [pkg-builder.dan.net.uk] | `-- Extracting libunistring-1.3: .......... done [pkg-builder.dan.net.uk] `-- Extracting libidn2-2.3.8: .......... done [pkg-builder.dan.net.uk] `-- Installing libuv-1.51.0... [pkg-builder.dan.net.uk] `-- Extracting libuv-1.51.0: .......... done [pkg-builder.dan.net.uk] `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] `-- Installing rhash-1.4.4_1... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg-builder.dan.net.uk] `-- Extracting rhash-1.4.4_1: .......... done [pkg-builder.dan.net.uk] Extracting cmake-core-3.31.6: .......... done ===> PETSc-3.22.4 depends on file: /usr/local/bin/cmake - found ===> Returning to build of PETSc-3.22.4 ===> PETSc-3.22.4 depends on executable: gfortran13 - not found ===> Installing existing package /packages/All/gcc13-13.3.0_2.pkg [pkg-builder.dan.net.uk] Installing gcc13-13.3.0_2... [pkg-builder.dan.net.uk] `-- Installing binutils-2.44,1... [pkg-builder.dan.net.uk] | `-- Installing zstd-1.5.7... [pkg-builder.dan.net.uk] | | `-- Installing liblz4-1.10.0,1... [pkg-builder.dan.net.uk] | | `-- Extracting liblz4-1.10.0,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting zstd-1.5.7: .......... done [pkg-builder.dan.net.uk] `-- Extracting binutils-2.44,1: .......... done [pkg-builder.dan.net.uk] `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | `-- Installing mpfr-4.2.2,1... [pkg-builder.dan.net.uk] | `-- Extracting mpfr-4.2.2,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] Extracting gcc13-13.3.0_2: .......... done ===== Message from gcc13-13.3.0_2: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> PETSc-3.22.4 depends on executable: gfortran13 - found ===> Returning to build of PETSc-3.22.4 ===> PETSc-3.22.4 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg-builder.dan.net.uk] Installing gmake-4.4.1... [pkg-builder.dan.net.uk] Extracting gmake-4.4.1: .......... done ===> PETSc-3.22.4 depends on package: gmake>=4.4.1 - found ===> Returning to build of PETSc-3.22.4 ===> PETSc-3.22.4 depends on file: /usr/local/bin/python3.11 - not found ===> Installing existing package /packages/All/python311-3.11.12.pkg [pkg-builder.dan.net.uk] Installing python311-3.11.12... [pkg-builder.dan.net.uk] `-- Installing libffi-3.4.8... [pkg-builder.dan.net.uk] `-- Extracting libffi-3.4.8: .......... done [pkg-builder.dan.net.uk] `-- Installing mpdecimal-4.0.0... [pkg-builder.dan.net.uk] `-- Extracting mpdecimal-4.0.0: .......... done [pkg-builder.dan.net.uk] `-- Installing readline-8.2.13_2... [pkg-builder.dan.net.uk] `-- Extracting readline-8.2.13_2: .......... done [pkg-builder.dan.net.uk] Extracting python311-3.11.12: .......... done ===== Message from python311-3.11.12: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> PETSc-3.22.4 depends on file: /usr/local/bin/python3.11 - found ===> Returning to build of PETSc-3.22.4 ===> PETSc-3.22.4 depends on file: /usr/local/bin/as - found ===> PETSc-3.22.4 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found ===> Installing existing package /packages/All/libX11-1.8.12,1.pkg [pkg-builder.dan.net.uk] Installing libX11-1.8.12,1... [pkg-builder.dan.net.uk] `-- Installing libxcb-1.17.0... [pkg-builder.dan.net.uk] | `-- Installing libXau-1.0.11... [pkg-builder.dan.net.uk] | `-- Extracting libXau-1.0.11: .......... done [pkg-builder.dan.net.uk] | `-- Installing libXdmcp-1.1.5... [pkg-builder.dan.net.uk] | | `-- Installing xorgproto-2024.1... [pkg-builder.dan.net.uk] | | `-- Extracting xorgproto-2024.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libXdmcp-1.1.5: ...... done [pkg-builder.dan.net.uk] `-- Extracting libxcb-1.17.0: .......... done [pkg-builder.dan.net.uk] Extracting libX11-1.8.12,1: .......... done ===> PETSc-3.22.4 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> Returning to build of PETSc-3.22.4 ===> PETSc-3.22.4 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> PETSc-3.22.4 depends on file: /usr/local/bin/ccache - found ===> Returning to build of PETSc-3.22.4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> PETSc-3.22.4 depends on shared library: libblis.so - not found ===> Installing existing package /packages/All/blis-1.1.pkg [pkg-builder.dan.net.uk] Installing blis-1.1... [pkg-builder.dan.net.uk] Extracting blis-1.1: .......... done ===> PETSc-3.22.4 depends on shared library: libblis.so - found (/usr/local/lib/libblis.so) ===> Returning to build of PETSc-3.22.4 ===> PETSc-3.22.4 depends on shared library: libmpich.so - not found ===> Installing existing package /packages/All/mpich-4.3.0.pkg [pkg-builder.dan.net.uk] Installing mpich-4.3.0... [pkg-builder.dan.net.uk] `-- Installing hwloc2-2.11.2... [pkg-builder.dan.net.uk] | `-- Installing level-zero-1.21.9... [pkg-builder.dan.net.uk] | | `-- Installing libfmt-10.2.1... [pkg-builder.dan.net.uk] | | `-- Extracting libfmt-10.2.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing spdlog-1.15.2... [pkg-builder.dan.net.uk] | | `-- Extracting spdlog-1.15.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting level-zero-1.21.9: .......... done [pkg-builder.dan.net.uk] | `-- Installing libpciaccess-0.18.1_1... [pkg-builder.dan.net.uk] | | `-- Installing hwdata-0.394,1... [pkg-builder.dan.net.uk] | | `-- Extracting hwdata-0.394,1: ...... done [pkg-builder.dan.net.uk] | `-- Extracting libpciaccess-0.18.1_1: ..... done [pkg-builder.dan.net.uk] | `-- Installing libxml2-2.11.9... [pkg-builder.dan.net.uk] | `-- Extracting libxml2-2.11.9: .......... done [pkg-builder.dan.net.uk] `-- Extracting hwloc2-2.11.2: .......... done [pkg-builder.dan.net.uk] `-- Installing json-c-0.18... [pkg-builder.dan.net.uk] `-- Extracting json-c-0.18: .......... done [pkg-builder.dan.net.uk] `-- Installing libepoll-shim-0.0.20240608... [pkg-builder.dan.net.uk] `-- Extracting libepoll-shim-0.0.20240608: .......... done [pkg-builder.dan.net.uk] `-- Installing libfabric-1.15.1_4... [pkg-builder.dan.net.uk] `-- Extracting libfabric-1.15.1_4: .......... done [pkg-builder.dan.net.uk] `-- Installing perl5-5.36.3_3... [pkg-builder.dan.net.uk] `-- Extracting perl5-5.36.3_3: .......... done [pkg-builder.dan.net.uk] Extracting mpich-4.3.0: .......... done ===> PETSc-3.22.4 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Returning to build of PETSc-3.22.4 ===> PETSc-3.22.4 depends on shared library: libmetis.so - not found ===> Installing existing package /packages/All/metis-5.1.0.p13,1.pkg [pkg-builder.dan.net.uk] Installing metis-5.1.0.p13,1... [pkg-builder.dan.net.uk] Extracting metis-5.1.0.p13,1: .......... done ===== Message from metis-5.1.0.p13,1: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> PETSc-3.22.4 depends on shared library: libmetis.so - found (/usr/local/lib/libmetis.so) ===> Returning to build of PETSc-3.22.4 ===> PETSc-3.22.4 depends on shared library: libblas.so - not found ===> Installing existing package /packages/All/blas-3.12.1.pkg [pkg-builder.dan.net.uk] Installing blas-3.12.1... [pkg-builder.dan.net.uk] Extracting blas-3.12.1: ..... done ===> PETSc-3.22.4 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Returning to build of PETSc-3.22.4 ===> PETSc-3.22.4 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.12.1.pkg [pkg-builder.dan.net.uk] Installing lapack-3.12.1... [pkg-builder.dan.net.uk] Extracting lapack-3.12.1: .......... done ===> PETSc-3.22.4 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of PETSc-3.22.4 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for PETSc-3.22.4 ============================================================================================= Configuring PETSc to compile on your system ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: CC=cc. Ignoring it! Use "./configure CC=$CC" if you really want to use this value ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: CXX=c++. Ignoring it! Use "./configure CXX=$CXX" if you really want to use this value ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: FC=gfortran13. Ignoring it! Use "./configure FC=$FC" if you really want to use this value ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: F77=gfortran13. Ignoring it! Use "./configure F77=$F77" if you really want to use this value ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: F90=gfortran13. Ignoring it! Use "./configure F90=$F90" if you really want to use this value ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: CFLAGS=-O2 -pipe -fstack-protector-strong -fno-strict-aliasing . Ignoring it, since it's also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: CXXFLAGS=-O2 -pipe -fstack-protector-strong -fno-strict-aliasing . Ignoring it, since it's also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: FCFLAGS=-Wl,-rpath=/usr/local/lib/gcc13. Ignoring it, since it's also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: FFLAGS=-O -Wl,-rpath=/usr/local/lib/gcc13. Ignoring it, since it's also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: F90FLAGS=-O -Wl,-rpath=/usr/local/lib/gcc13. Ignoring it! Use "./configure F90FLAGS=$F90FLAGS" if you really want to use this value ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: CPP=cpp. Ignoring it! Use "./configure CPP=$CPP" if you really want to use this value ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: CPPFLAGS=. Ignoring it, since it's also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: LDFLAGS= /usr/local/lib/libmpi.so -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong . Ignoring it, since it's also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: LIBS=. Ignoring it, since it's also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: AR=/usr/local/bin/ar. Ignoring it, since it's also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: RANLIB=/usr/local/bin/ranlib. Ignoring it, since it's also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** mpiexec may not work on your system due to network issues. Perhaps you have VPN running whose network settings may not work with mpiexec or your network is misconfigured ============================================================================================= ********************************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): --------------------------------------------------------------------------------------------- Metis specified is incompatible! --with-64-bit-indices option requires a metis build with IDXTYPEWIDTH=64. Suggest using --download-metis for a compatible metis ********************************************************************************************* ===> Script "configure" failed unexpectedly. Please report the problem to yuri@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/science/PETSc/work/petsc-3.22.4/configure.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/science/PETSc =>> Cleaning up wrkdir ===> Cleaning for PETSc-3.22.4 build of science/PETSc | PETSc-3.22.4 ended at Thu May 1 08:53:01 BST 2025 build time: 00:02:49 !!! build failure encountered !!!