=>> Building misc/snakemake build started at Thu Apr 4 22:06:52 BST 2024 port directory: /usr/ports/misc/snakemake package name: snakemake-6.15.5_1 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1663 Jun 29 2023 /usr/ports/misc/snakemake/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: 3d9a815d9c Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/misc/snakemake/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/snakemake/work XDG_CACHE_HOME=/wrkdirs/usr/ports/misc/snakemake/work/.cache HOME=/wrkdirs/usr/ports/misc/snakemake/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/misc/snakemake/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/misc/snakemake/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCACHE_DIR="/root/.ccache" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/misc/snakemake/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/snakemake/work XDG_CACHE_HOME=/wrkdirs/usr/ports/misc/snakemake/work/.cache HOME=/wrkdirs/usr/ports/misc/snakemake/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/misc/snakemake/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/misc/snakemake/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/snakemake" EXAMPLESDIR="share/examples/snakemake" DATADIR="share/snakemake" WWWDIR="www/snakemake" ETCDIR="etc/snakemake" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/snakemake DOCSDIR=/usr/local/share/doc/snakemake EXAMPLESDIR=/usr/local/share/examples/snakemake WWWDIR=/usr/local/www/snakemake ETCDIR=/usr/local/etc/snakemake --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> snakemake-6.15.5_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> snakemake-6.15.5_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of snakemake-6.15.5_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by snakemake-6.15.5_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by snakemake-6.15.5_1 for building => SHA256 Checksum OK for snakemake-6.15.5.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by snakemake-6.15.5_1 for building ===> Extracting for snakemake-6.15.5_1 => SHA256 Checksum OK for snakemake-6.15.5.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for snakemake-6.15.5_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> snakemake-6.15.5_1 depends on package: py39-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py39-setuptools-63.1.0_1.pkg [pkg-builder.dan.net.uk] Installing py39-setuptools-63.1.0_1... [pkg-builder.dan.net.uk] `-- Installing python39-3.9.18_1... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.4_1... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.4_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-2.5.1... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-2.5.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing openssl-3.0.13_1,1... [pkg-builder.dan.net.uk] | `-- Extracting openssl-3.0.13_1,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.10... [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.10: .......... done [pkg-builder.dan.net.uk] `-- Extracting python39-3.9.18_1: .......... done [pkg-builder.dan.net.uk] Extracting py39-setuptools-63.1.0_1: .......... done ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> snakemake-6.15.5_1 depends on package: py39-setuptools>=63.1.0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for snakemake-6.15.5_1 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for snakemake-6.15.5_1 running build running build_py creating build creating build/lib creating build/lib/snakemake copying snakemake/modules.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake copying snakemake/stats.py -> build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/script.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake creating build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote creating build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report creating build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common creating build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/remote.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching creating build/lib/snakemake/deployment copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment creating build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting creating build/lib/snakemake/executors copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors creating build/lib/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/report/report.html.jinja2 -> build/lib/snakemake/report copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '6.15.5' =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> snakemake-6.15.5_1 depends on package: py39-appdirs>0 - not found ===> Installing existing package /packages/All/py39-appdirs-1.4.4.pkg [pkg-builder.dan.net.uk] Installing py39-appdirs-1.4.4... [pkg-builder.dan.net.uk] Extracting py39-appdirs-1.4.4: ....... done ===> snakemake-6.15.5_1 depends on package: py39-appdirs>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-connection_pool>=0.0.3>0 - not found ===> Installing existing package /packages/All/py39-connection_pool-0.0.3.pkg [pkg-builder.dan.net.uk] Installing py39-connection_pool-0.0.3... [pkg-builder.dan.net.uk] Extracting py39-connection_pool-0.0.3: ....... done ===> snakemake-6.15.5_1 depends on package: py39-connection_pool>=0.0.3>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-configargparse>0 - not found ===> Installing existing package /packages/All/py39-configargparse-1.5.3.pkg [pkg-builder.dan.net.uk] Installing py39-configargparse-1.5.3... [pkg-builder.dan.net.uk] Extracting py39-configargparse-1.5.3: ........ done ===> snakemake-6.15.5_1 depends on package: py39-configargparse>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-datrie>0 - not found ===> Installing existing package /packages/All/py39-datrie-0.8.2.pkg [pkg-builder.dan.net.uk] Installing py39-datrie-0.8.2... [pkg-builder.dan.net.uk] Extracting py39-datrie-0.8.2: ..... done ===> snakemake-6.15.5_1 depends on package: py39-datrie>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-docutils>0 - not found ===> Installing existing package /packages/All/py39-docutils-0.19,1.pkg [pkg-builder.dan.net.uk] Installing py39-docutils-0.19,1... [pkg-builder.dan.net.uk] Extracting py39-docutils-0.19,1: .......... done ===> snakemake-6.15.5_1 depends on package: py39-docutils>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-filelock>0 - not found ===> Installing existing package /packages/All/py39-filelock-3.13.1.pkg [pkg-builder.dan.net.uk] Installing py39-filelock-3.13.1... [pkg-builder.dan.net.uk] `-- Installing py39-typing-extensions-4.10.0... [pkg-builder.dan.net.uk] `-- Extracting py39-typing-extensions-4.10.0: ....... done [pkg-builder.dan.net.uk] Extracting py39-filelock-3.13.1: .......... done ===> snakemake-6.15.5_1 depends on package: py39-filelock>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-gitpython>0 - not found ===> Installing existing package /packages/All/py39-gitpython-3.1.30.pkg [pkg-builder.dan.net.uk] Installing py39-gitpython-3.1.30... [pkg-builder.dan.net.uk] `-- Installing py39-gitdb-4.0.11... [pkg-builder.dan.net.uk] | `-- Installing py39-smmap-5.0.1... [pkg-builder.dan.net.uk] | `-- Extracting py39-smmap-5.0.1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-gitdb-4.0.11: .......... done [pkg-builder.dan.net.uk] Extracting py39-gitpython-3.1.30: .......... done ===> snakemake-6.15.5_1 depends on package: py39-gitpython>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-jsonschema>0 - not found ===> Installing existing package /packages/All/py39-jsonschema-4.21.1.pkg [pkg-builder.dan.net.uk] Installing py39-jsonschema-4.21.1... [pkg-builder.dan.net.uk] `-- Installing py39-attrs-23.2.0... [pkg-builder.dan.net.uk] `-- Extracting py39-attrs-23.2.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-jsonschema-specifications-2023.6.1... [pkg-builder.dan.net.uk] | `-- Installing py39-referencing-0.33.0... [pkg-builder.dan.net.uk] | | `-- Installing py39-rpds-py-0.13.2_3... [pkg-builder.dan.net.uk] | | `-- Extracting py39-rpds-py-0.13.2_3: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-referencing-0.33.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-jsonschema-specifications-2023.6.1: .......... done [pkg-builder.dan.net.uk] Extracting py39-jsonschema-4.21.1: .......... done ===> snakemake-6.15.5_1 depends on package: py39-jsonschema>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-nbformat>0 - not found ===> Installing existing package /packages/All/py39-nbformat-5.9.2.pkg [pkg-builder.dan.net.uk] Installing py39-nbformat-5.9.2... [pkg-builder.dan.net.uk] `-- Installing py39-fastjsonschema-2.19.1... [pkg-builder.dan.net.uk] `-- Extracting py39-fastjsonschema-2.19.1: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-jupyter-core-5.7.1... [pkg-builder.dan.net.uk] | `-- Installing py39-platformdirs-3.11.0... [pkg-builder.dan.net.uk] | `-- Extracting py39-platformdirs-3.11.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-traitlets-5.14.2... [pkg-builder.dan.net.uk] | `-- Extracting py39-traitlets-5.14.2: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-jupyter-core-5.7.1: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-sqlite3-3.9.18_7... [pkg-builder.dan.net.uk] | `-- Installing sqlite3-3.45.1,1... [pkg-builder.dan.net.uk] | | `-- Installing libedit-3.1.20230828_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting libedit-3.1.20230828_1,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting sqlite3-3.45.1,1: ......... done [pkg-builder.dan.net.uk] `-- Extracting py39-sqlite3-3.9.18_7: ..... done [pkg-builder.dan.net.uk] Extracting py39-nbformat-5.9.2: .......... done ===> snakemake-6.15.5_1 depends on package: py39-nbformat>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-PuLP>=2.0 - not found ===> Installing existing package /packages/All/py39-PuLP-2.7.0_1.pkg [pkg-builder.dan.net.uk] Installing py39-PuLP-2.7.0_1... [pkg-builder.dan.net.uk] `-- Installing coin-or-cbc-2.10.11_1... [pkg-builder.dan.net.uk] | `-- Installing coin-or-Clp-1.17.9_1... [pkg-builder.dan.net.uk] | | `-- Installing blas-3.12.0_1... [pkg-builder.dan.net.uk] | | `-- Installing gcc13-13.2.0_4... [pkg-builder.dan.net.uk] | | | `-- Installing binutils-2.40_5,1... [pkg-builder.dan.net.uk] | | | `-- Installing zstd-1.5.5_1... [pkg-builder.dan.net.uk] | | | | `-- Installing liblz4-1.9.4_1,1... [pkg-builder.dan.net.uk] | | | | `-- Extracting liblz4-1.9.4_1,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting zstd-1.5.5_1: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting binutils-2.40_5,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | | | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | | `-- Installing mpfr-4.2.1,1... [pkg-builder.dan.net.uk] | | | `-- Extracting mpfr-4.2.1,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] | | `-- Extracting gcc13-13.2.0_4: .......... done create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) [pkg-builder.dan.net.uk] | | `-- Extracting blas-3.12.0_1: ..... done [pkg-builder.dan.net.uk] | | `-- Installing coin-or-CoinUtils-2.11.10_1... [pkg-builder.dan.net.uk] | | `-- Installing coin-or-Data-Netlib-1.2.9... [pkg-builder.dan.net.uk] | | `-- Extracting coin-or-Data-Netlib-1.2.9: .......... done [pkg-builder.dan.net.uk] | | `-- Installing coin-or-Data-Sample-1.2.12... [pkg-builder.dan.net.uk] | | `-- Extracting coin-or-Data-Sample-1.2.12: .......... done [pkg-builder.dan.net.uk] | | `-- Installing openblas-0.3.25,2... [pkg-builder.dan.net.uk] | | `-- Extracting openblas-0.3.25,2: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting coin-or-CoinUtils-2.11.10_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing coin-or-Osi-0.108.9_1... [pkg-builder.dan.net.uk] | | `-- Extracting coin-or-Osi-0.108.9_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing coin-or-asl-2.0.1... [pkg-builder.dan.net.uk] | | `-- Extracting coin-or-asl-2.0.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing coin-or-metis-1.3.10_2... [pkg-builder.dan.net.uk] | | `-- Extracting coin-or-metis-1.3.10_2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing coin-or-mumps-3.0.3_3... [pkg-builder.dan.net.uk] | | `-- Installing lapack-3.12.0_2... [pkg-builder.dan.net.uk] | | `-- Extracting lapack-3.12.0_2: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting coin-or-mumps-3.0.3_3: ......... done [pkg-builder.dan.net.uk] | `-- Extracting coin-or-Clp-1.17.9_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing coin-or-cgl-0.60.8_2... [pkg-builder.dan.net.uk] | `-- Extracting coin-or-cgl-0.60.8_2: .......... done [pkg-builder.dan.net.uk] | `-- Installing nauty-2.8.6_1,1... [pkg-builder.dan.net.uk] | `-- Extracting nauty-2.8.6_1,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting coin-or-cbc-2.10.11_1: .......... done [pkg-builder.dan.net.uk] `-- Installing glpk-5.0... [pkg-builder.dan.net.uk] `-- Extracting glpk-5.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-amply-0.1.6... [pkg-builder.dan.net.uk] | `-- Installing py39-pyparsing-3.1.1... [pkg-builder.dan.net.uk] | `-- Extracting py39-pyparsing-3.1.1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-amply-0.1.6: .......... done [pkg-builder.dan.net.uk] Extracting py39-PuLP-2.7.0_1: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> snakemake-6.15.5_1 depends on package: py39-PuLP>=2.0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-psutil>0 - not found ===> Installing existing package /packages/All/py39-psutil-5.9.8.pkg [pkg-builder.dan.net.uk] Installing py39-psutil-5.9.8... [pkg-builder.dan.net.uk] Extracting py39-psutil-5.9.8: .......... done ===> snakemake-6.15.5_1 depends on package: py39-psutil>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-ratelimiter>0 - not found ===> Installing existing package /packages/All/py39-ratelimiter-1.2.0_1.pkg [pkg-builder.dan.net.uk] Installing py39-ratelimiter-1.2.0_1... [pkg-builder.dan.net.uk] Extracting py39-ratelimiter-1.2.0_1: ........ done ===> snakemake-6.15.5_1 depends on package: py39-ratelimiter>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-requests>0 - not found ===> Installing existing package /packages/All/py39-requests-2.31.0.pkg [pkg-builder.dan.net.uk] Installing py39-requests-2.31.0... [pkg-builder.dan.net.uk] `-- Installing py39-certifi-2024.2.2... [pkg-builder.dan.net.uk] `-- Extracting py39-certifi-2024.2.2: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-charset-normalizer-3.3.2... [pkg-builder.dan.net.uk] `-- Extracting py39-charset-normalizer-3.3.2: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-idna-3.6... [pkg-builder.dan.net.uk] `-- Extracting py39-idna-3.6: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-pysocks-1.7.1... [pkg-builder.dan.net.uk] `-- Extracting py39-pysocks-1.7.1: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-urllib3-1.26.18,1... [pkg-builder.dan.net.uk] | `-- Installing py39-cryptography-42.0.5,1... [pkg-builder.dan.net.uk] | | `-- Installing py39-cffi-1.16.0... [pkg-builder.dan.net.uk] | | `-- Installing py39-pycparser-2.21... [pkg-builder.dan.net.uk] | | `-- Extracting py39-pycparser-2.21: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py39-cffi-1.16.0: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-cryptography-42.0.5,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-openssl-23.2.0,1... [pkg-builder.dan.net.uk] | `-- Extracting py39-openssl-23.2.0,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-urllib3-1.26.18,1: .......... done [pkg-builder.dan.net.uk] Extracting py39-requests-2.31.0: .......... done ===== Message from py39-urllib3-1.26.18,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. ===> snakemake-6.15.5_1 depends on package: py39-requests>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-smart-open>=3.0 - not found ===> Installing existing package /packages/All/py39-smart-open-7.0.1.pkg [pkg-builder.dan.net.uk] Installing py39-smart-open-7.0.1... [pkg-builder.dan.net.uk] `-- Installing py39-azure-common-1.1.27... [pkg-builder.dan.net.uk] | `-- Installing py39-azure-cli-base-1.0.0... [pkg-builder.dan.net.uk] | `-- Extracting py39-azure-cli-base-1.0.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-azure-common-1.1.27: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-azure-core-1.29.2... [pkg-builder.dan.net.uk] | `-- Installing py39-aiohttp-3.9.3... [pkg-builder.dan.net.uk] | | `-- Installing py39-aiosignal-1.3.1... [pkg-builder.dan.net.uk] | | `-- Installing py39-frozenlist-1.4.1... [pkg-builder.dan.net.uk] | | `-- Extracting py39-frozenlist-1.4.1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py39-aiosignal-1.3.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-async_timeout-4.0.3... [pkg-builder.dan.net.uk] | | `-- Extracting py39-async_timeout-4.0.3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-multidict-6.0.4... [pkg-builder.dan.net.uk] | | `-- Extracting py39-multidict-6.0.4: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-yarl-1.9.4... [pkg-builder.dan.net.uk] | | `-- Extracting py39-yarl-1.9.4: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-aiohttp-3.9.3: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-six-1.16.0... [pkg-builder.dan.net.uk] | `-- Extracting py39-six-1.16.0: ....... done [pkg-builder.dan.net.uk] `-- Extracting py39-azure-core-1.29.2: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-azure-storage-blob-2.1.0... [pkg-builder.dan.net.uk] | `-- Installing py39-azure-storage-common-2.1.0... [pkg-builder.dan.net.uk] | | `-- Installing py39-dateutil-2.9.0... [pkg-builder.dan.net.uk] | | `-- Extracting py39-dateutil-2.9.0: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-azure-storage-common-2.1.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-azure-storage-blob-2.1.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-boto3-1.34.54... [pkg-builder.dan.net.uk] | `-- Installing py39-botocore-1.34.54... [pkg-builder.dan.net.uk] | | `-- Installing py39-jmespath-1.0.1... [pkg-builder.dan.net.uk] | | `-- Extracting py39-jmespath-1.0.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-botocore-1.34.54: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-s3transfer-0.10.0... [pkg-builder.dan.net.uk] | `-- Extracting py39-s3transfer-0.10.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-boto3-1.34.54: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-google-cloud-storage-2.14.0... [pkg-builder.dan.net.uk] | `-- Installing py39-google-api-core-2.17.1... [pkg-builder.dan.net.uk] | | `-- Installing py39-google-auth-2.28.1... [pkg-builder.dan.net.uk] | | `-- Installing py39-cachetools-5.3.3... [pkg-builder.dan.net.uk] | | `-- Extracting py39-cachetools-5.3.3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-pyasn1-modules-0.3.0... [pkg-builder.dan.net.uk] | | | `-- Installing py39-pyasn1-0.5.0... [pkg-builder.dan.net.uk] | | | `-- Extracting py39-pyasn1-0.5.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py39-pyasn1-modules-0.3.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-rsa-4.9... [pkg-builder.dan.net.uk] | | `-- Extracting py39-rsa-4.9: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py39-google-auth-2.28.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-googleapis-common-protos-1.62.0... [pkg-builder.dan.net.uk] | | `-- Installing py39-protobuf-4.25.3,1... [pkg-builder.dan.net.uk] | | `-- Extracting py39-protobuf-4.25.3,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py39-googleapis-common-protos-1.62.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-grpcio-1.62.1... [pkg-builder.dan.net.uk] | | `-- Installing c-ares-1.27.0... [pkg-builder.dan.net.uk] | | `-- Extracting c-ares-1.27.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py39-grpcio-1.62.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-grpcio-status-1.60.1... [pkg-builder.dan.net.uk] | | `-- Extracting py39-grpcio-status-1.60.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-google-api-core-2.17.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-google-cloud-core-2.4.1... [pkg-builder.dan.net.uk] | `-- Extracting py39-google-cloud-core-2.4.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-google-crc32c-1.5.0... [pkg-builder.dan.net.uk] | | `-- Installing crc32c-1.1.2... [pkg-builder.dan.net.uk] | | `-- Extracting crc32c-1.1.2: ........ done [pkg-builder.dan.net.uk] | `-- Extracting py39-google-crc32c-1.5.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-google-resumable-media-2.7.0... [pkg-builder.dan.net.uk] | `-- Extracting py39-google-resumable-media-2.7.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-google-cloud-storage-2.14.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-paramiko-2.11.0_1... [pkg-builder.dan.net.uk] | `-- Installing py39-bcrypt-3.2.2_1... [pkg-builder.dan.net.uk] | `-- Extracting py39-bcrypt-3.2.2_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-pynacl-1.5.0... [pkg-builder.dan.net.uk] | | `-- Installing libsodium-1.0.18... [pkg-builder.dan.net.uk] | | `-- Extracting libsodium-1.0.18: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-pynacl-1.5.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-paramiko-2.11.0_1: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-wrapt-1.16.0... [pkg-builder.dan.net.uk] `-- Extracting py39-wrapt-1.16.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-zstandard-0.22.0... [pkg-builder.dan.net.uk] `-- Extracting py39-zstandard-0.22.0: .......... done [pkg-builder.dan.net.uk] Extracting py39-smart-open-7.0.1: .......... done ===> snakemake-6.15.5_1 depends on package: py39-smart-open>=3.0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-stopit>0 - not found ===> Installing existing package /packages/All/py39-stopit-1.1.2.pkg [pkg-builder.dan.net.uk] Installing py39-stopit-1.1.2... [pkg-builder.dan.net.uk] Extracting py39-stopit-1.1.2: .......... done ===> snakemake-6.15.5_1 depends on package: py39-stopit>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-tabulate>0 - not found ===> Installing existing package /packages/All/py39-tabulate-0.8.9.pkg [pkg-builder.dan.net.uk] Installing py39-tabulate-0.8.9... [pkg-builder.dan.net.uk] Extracting py39-tabulate-0.8.9: .......... done ===> snakemake-6.15.5_1 depends on package: py39-tabulate>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-toposort>0 - not found ===> Installing existing package /packages/All/py39-toposort-1.5.pkg [pkg-builder.dan.net.uk] Installing py39-toposort-1.5... [pkg-builder.dan.net.uk] Extracting py39-toposort-1.5: ....... done ===> snakemake-6.15.5_1 depends on package: py39-toposort>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-wrapt>0 - found ===> snakemake-6.15.5_1 depends on package: py39-yaml>0 - not found ===> Installing existing package /packages/All/py39-yaml-6.0.1.pkg [pkg-builder.dan.net.uk] Installing py39-yaml-6.0.1... [pkg-builder.dan.net.uk] Extracting py39-yaml-6.0.1: .......... done ===> snakemake-6.15.5_1 depends on package: py39-yaml>0 - found ===> Returning to build of snakemake-6.15.5_1 ===> snakemake-6.15.5_1 depends on package: py39-setuptools>=63.1.0 - found ===> snakemake-6.15.5_1 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for snakemake-6.15.5_1 ===> Generating temporary packing list running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '6.15.5' running install_lib creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9 creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/common copying build/lib/snakemake/common/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/common copying build/lib/snakemake/modules.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/decorators.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/gui.html -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/workflow.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/report copying build/lib/snakemake/report/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/report copying build/lib/snakemake/report/report.html.jinja2 -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/report copying build/lib/snakemake/notebook.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/logging.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/shell.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/__main__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/deployment copying build/lib/snakemake/stats.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/wrapper.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/rules.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/checkpoints.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/jobs.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/io.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/S3.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/GS.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote copying build/lib/snakemake/gui.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/persistence.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/resources.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/benchmark.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/report.css -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/script.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/path_modifier.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/parser.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/ruleinfo.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/utils.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/dag.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/exceptions.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/executors copying build/lib/snakemake/executors/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences_helper.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/executors copying build/lib/snakemake/executors/ga4gh_tes.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/executors copying build/lib/snakemake/cwl.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/output_index.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/linting copying build/lib/snakemake/linting/rules.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/linting copying build/lib/snakemake/linting/links.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/linting copying build/lib/snakemake/scheduler.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/caching copying build/lib/snakemake/caching/local.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/caching copying build/lib/snakemake/caching/remote.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/caching copying build/lib/snakemake/caching/hash.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/caching creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/unit_tests copying build/lib/snakemake/unit_tests/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/unit_tests creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/unit_tests/templates copying build/lib/snakemake/sourcecache.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake copying build/lib/snakemake/_version.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/common/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/modules.py to modules.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/decorators.py to decorators.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/workflow.py to workflow.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/report/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/notebook.py to notebook.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/logging.py to logging.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/shell.py to shell.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/__main__.py to __main__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/deployment/containerize.py to containerize.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/deployment/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/deployment/env_modules.py to env_modules.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/deployment/singularity.py to singularity.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/deployment/conda.py to conda.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/stats.py to stats.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/wrapper.py to wrapper.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/rules.py to rules.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/checkpoints.py to checkpoints.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/jobs.py to jobs.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/io.py to io.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/SFTP.py to SFTP.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/S3.py to S3.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/GS.py to GS.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/gridftp.py to gridftp.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/NCBI.py to NCBI.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/dropbox.py to dropbox.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/HTTP.py to HTTP.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/FTP.py to FTP.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/S3Mocked.py to S3Mocked.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/AzBlob.py to AzBlob.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/EGA.py to EGA.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/webdav.py to webdav.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/XRootD.py to XRootD.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/gfal.py to gfal.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/remote/iRODS.py to iRODS.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/gui.py to gui.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/persistence.py to persistence.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/resources.py to resources.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/benchmark.py to benchmark.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/script.py to script.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/path_modifier.py to path_modifier.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/parser.py to parser.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/ruleinfo.py to ruleinfo.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/utils.py to utils.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/dag.py to dag.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/exceptions.py to exceptions.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py to google_lifesciences.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/executors/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/executors/google_lifesciences_helper.py to google_lifesciences_helper.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/executors/ga4gh_tes.py to ga4gh_tes.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/cwl.py to cwl.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/output_index.py to output_index.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/linting/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/linting/rules.py to rules.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/linting/links.py to links.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/linting/snakefiles.py to snakefiles.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/scheduler.py to scheduler.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/caching/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/caching/local.py to local.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/caching/remote.py to remote.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/caching/hash.py to hash.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/unit_tests/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/unit_tests/templates/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/sourcecache.py to sourcecache.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake/_version.py to _version.cpython-39.pyc writing byte-compilation script '/tmp/tmpy3756o_4.py' /usr/local/bin/python3.9 /tmp/tmpy3756o_4.py removing /tmp/tmpy3756o_4.py running install_egg_info running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.9/site-packages/snakemake-6.15.5-py3.9.egg-info running install_scripts Installing snakemake script to /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/bin Installing snakemake-bash-completion script to /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/bin writing list of installed files to '/wrkdirs/usr/ports/misc/snakemake/work/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-04-04T21:06:53+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=3d9a815d9c' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for snakemake-6.15.5_1 ===> Building snakemake-6.15.5_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for snakemake-6.15.5_1 build of misc/snakemake | snakemake-6.15.5_1 ended at Thu Apr 4 22:11:31 BST 2024 build time: 00:04:48