=>> Building biology/seqwish build started at Wed Apr 3 01:07:49 BST 2024 port directory: /usr/ports/biology/seqwish package name: seqwish-0.7.9 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 839 Nov 6 13:35 /usr/ports/biology/seqwish/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: 25d04c675e Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 08 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/08/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for seqwish-0.7.9: OPENMP=on: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCACHE_DIR="/root/.ccache" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local 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unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> seqwish-0.7.9 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqwish-0.7.9 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by seqwish-0.7.9 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by seqwish-0.7.9 for building => SHA256 Checksum OK for seqwish-v0.7.9.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by seqwish-0.7.9 for building ===> Extracting for seqwish-0.7.9 => SHA256 Checksum OK for seqwish-v0.7.9.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for seqwish-0.7.9 ===> Applying FreeBSD patches for seqwish-0.7.9 from /usr/ports/biology/seqwish/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqwish-0.7.9 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.3.pkg [pkg-builder.dan.net.uk] Installing cmake-core-3.28.3... [pkg-builder.dan.net.uk] `-- Installing expat-2.6.1... [pkg-builder.dan.net.uk] `-- Extracting expat-2.6.1: .......... done [pkg-builder.dan.net.uk] `-- Installing jsoncpp-1.9.5... [pkg-builder.dan.net.uk] `-- Extracting jsoncpp-1.9.5: .......... done [pkg-builder.dan.net.uk] `-- Installing libuv-1.48.0... [pkg-builder.dan.net.uk] `-- Extracting libuv-1.48.0: .......... done [pkg-builder.dan.net.uk] `-- Installing openssl-3.0.13_1,1... [pkg-builder.dan.net.uk] `-- Extracting openssl-3.0.13_1,1: .......... done [pkg-builder.dan.net.uk] `-- Installing rhash-1.4.4_1... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting rhash-1.4.4_1: .......... done [pkg-builder.dan.net.uk] Extracting cmake-core-3.28.3: .......... done ===> seqwish-0.7.9 depends on file: /usr/local/bin/cmake - found ===> Returning to build of seqwish-0.7.9 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for seqwish-0.7.9 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/seqwish/work/.build CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is Clang 14.0.5 -- The CXX compiler identification is Clang 14.0.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /ccache/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /ccache/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Found Threads: TRUE -- CMAKE_BUILD_TYPE: Release -- CMAKE_SYSTEM_NAME: FreeBSD -- Configuring done (1.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED USE_OPENMP -- Build files have been written to: /wrkdirs/usr/ports/biology/seqwish/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for seqwish-0.7.9 /usr/local/bin/cmake -S/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -B/wrkdirs/usr/ports/biology/seqwish/work/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /wrkdirs/usr/ports/biology/seqwish/work/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f CMakeFiles/sdsl-lite.dir/build.make CMakeFiles/sdsl-lite.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/sdsl-lite.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/sdsl-lite.dir/build.make CMakeFiles/sdsl-lite.dir/build [ 1%] Creating directories for 'sdsl-lite' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/tmp/sdsl-lite-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-mkdir [ 1%] No download step for 'sdsl-lite' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-download [ 2%] No update step for 'sdsl-lite' cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/sdsl-lite && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/sdsl-lite && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-update [ 3%] No patch step for 'sdsl-lite' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-patch [ 4%] Performing configure step for 'sdsl-lite' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix "-GUnix Makefiles" -S /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/sdsl-lite -B /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is Clang 14.0.5 -- The C compiler identification is Clang 14.0.5 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /ccache/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /ccache/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Compiler is recent enough to support C++11. -- Performing Test HAVE_CLANG_STD=C__11__DNDEBUG -- Performing Test HAVE_CLANG_STD=C__11__DNDEBUG - Success -- Performing Test HAVE_CLANG_STDLIB=LIBC__ -- Performing Test HAVE_CLANG_STDLIB=LIBC__ - Success -- Performing Test HAVE_CLANG_O3__FFAST_MATH__FUNROLL_LOOPS__D__EXTERN_ALWAYS_INLINE="EXTERN___ALWAYS_INLINE"_ -- Performing Test HAVE_CLANG_O3__FFAST_MATH__FUNROLL_LOOPS__D__EXTERN_ALWAYS_INLINE="EXTERN___ALWAYS_INLINE"_ - Success -- Performing Test HAVE_CXA_DEMANGLE -- Performing Test HAVE_CXA_DEMANGLE - Failed -- Could NOT find CxaDemangle (missing: HAVE_CXA_DEMANGLE) -- Could NOT find Git (missing: GIT_EXECUTABLE) CMake Warning at CMakeLists.txt:118 (message): git not found. Cloning of submodules will not work. CMake Deprecation Warning at external/libdivsufsort/CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Warning (dev) at external/libdivsufsort/CMakeLists.txt:7 (project): Policy CMP0048 is not set: project() command manages VERSION variables. Run "cmake --help-policy CMP0048" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The following variable(s) would be set to empty: PROJECT_VERSION PROJECT_VERSION_MAJOR PROJECT_VERSION_MINOR PROJECT_VERSION_PATCH This warning is for project developers. Use -Wno-dev to suppress it. -- Performing Test HAVE_UNKNOWN_WALL -- Performing Test HAVE_UNKNOWN_WALL - Success -- Performing Test HAVE_UNKNOWN_FOMIT_FRAME_POINTER -- Performing Test HAVE_UNKNOWN_FOMIT_FRAME_POINTER - Success -- Looking for inttypes.h -- Looking for inttypes.h - found -- Looking for memory.h -- Looking for memory.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stdlib.h -- Looking for stdlib.h - found -- Looking for string.h -- Looking for string.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Performing Test HAVE_INLINE -- Performing Test HAVE_INLINE - Success -- Performing Test HAVE___INLINE -- Performing Test HAVE___INLINE - Success -- Performing Test HAVE___INLINE__ -- Performing Test HAVE___INLINE__ - Success -- Performing Test HAVE___DECLSPEC_DLLEXPORT_ -- Performing Test HAVE___DECLSPEC_DLLEXPORT_ - Failed -- Performing Test HAVE___DECLSPEC_DLLIMPORT_ -- Performing Test HAVE___DECLSPEC_DLLIMPORT_ - Failed -- Check size of uint8_t -- Check size of uint8_t - done -- Check size of int32_t -- Check size of int32_t - done -- Looking for PRId32 -- Looking for PRId32 - found -- Check size of int64_t -- Check size of int64_t - done -- Looking for PRId64 -- Looking for PRId64 - found CMake Warning (dev) at external/googletest/googletest/CMakeLists.txt:47 (project): Policy CMP0048 is not set: project() command manages VERSION variables. Run "cmake --help-policy CMP0048" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The following variable(s) would be set to empty: PROJECT_VERSION PROJECT_VERSION_MAJOR PROJECT_VERSION_MINOR PROJECT_VERSION_PATCH This warning is for project developers. Use -Wno-dev to suppress it. CMake Deprecation Warning at external/googletest/googletest/CMakeLists.txt:48 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Warning (dev) at external/googletest/googletest/cmake/internal_utils.cmake:211 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): external/googletest/googletest/CMakeLists.txt:60 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include cstdio -- Looking for C++ include cstdio - found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (7.5s) -- Generating done (0.1s) -- Build files have been written to: /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-configure [ 5%] Performing build step for 'sdsl-lite' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/bin/make [ 0%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/divsufsort.o [ 0%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/sssort.o [ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/trsort.o [ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/utils.o [ 10%] Linking C static library libdivsufsort.a [ 10%] Built target divsufsort [ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/divsufsort.o [ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/sssort.o [ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/trsort.o [ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/utils.o [ 20%] Linking C static library libdivsufsort64.a [ 20%] Built target divsufsort64 [ 20%] Building CXX object external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o [ 20%] Linking CXX static library libgtest.a [ 20%] Built target gtest [ 20%] Building CXX object external/googletest/googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o [ 30%] Linking CXX static library libgtest_main.a [ 30%] Built target gtest_main [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/bits.cpp.o [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/config.cpp.o [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_config.cpp.o [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/sdsl-lite/lib/construct_lcp.cpp:6: /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/construct_lcp.hpp:130:53: warning: instantiation of variable 'sdsl::key_text_trait<'\b'>::KEY_TEXT' required here, but no definition is available [-Wundefined-var-template] const char* KEY_TEXT = key_text_trait::KEY_TEXT; ^ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/sdsl-lite/lib/construct_lcp.cpp:209:25: note: in instantiation of function template specialization 'sdsl::construct_lcp_PHI<(unsigned char)'\b'>' requested here construct_lcp_PHI<8>(config); ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/config.hpp:51:24: note: forward declaration of template entity is here static const char* KEY_TEXT; ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/lib/../include/sdsl/construct_lcp.hpp:130:53: note: add an explicit instantiation declaration to suppress this warning if 'sdsl::key_text_trait<'\b'>::KEY_TEXT' is explicitly instantiated in another translation unit const char* KEY_TEXT = key_text_trait::KEY_TEXT; ^ 1 warning generated. [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/io.cpp.o [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/memory_management.cpp.o [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o [ 80%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o [ 80%] Building CXX object lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o [ 80%] Building CXX object lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o [ 80%] Building CXX object lib/CMakeFiles/sdsl.dir/sfstream.cpp.o [ 90%] Building CXX object lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o [ 90%] Building CXX object lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o [ 90%] Building CXX object lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o [ 90%] Building CXX object lib/CMakeFiles/sdsl.dir/util.cpp.o [100%] Building CXX object lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o [100%] Linking CXX static library libsdsl.a [100%] Built target sdsl cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-build [ 6%] No install step for 'sdsl-lite' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-install [ 7%] Completed 'sdsl-lite' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/sdsl-lite-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-done [ 7%] Built target sdsl-lite /usr/bin/make -f CMakeFiles/tayweeargs.dir/build.make CMakeFiles/tayweeargs.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/tayweeargs.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/tayweeargs.dir/build.make CMakeFiles/tayweeargs.dir/build [ 8%] Creating directories for 'tayweeargs' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/tmp/tayweeargs-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-mkdir [ 9%] No download step for 'tayweeargs' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-download [ 10%] No update step for 'tayweeargs' cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-update [ 11%] No patch step for 'tayweeargs' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-patch [ 12%] No configure step for 'tayweeargs' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-configure [ 12%] No build step for 'tayweeargs' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-build [ 13%] No install step for 'tayweeargs' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-install [ 14%] Completed 'tayweeargs' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/tayweeargs-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-done [ 14%] Built target tayweeargs /usr/bin/make -f CMakeFiles/gzipreader.dir/build.make CMakeFiles/gzipreader.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/gzipreader.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/gzipreader.dir/build.make CMakeFiles/gzipreader.dir/build [ 15%] Creating directories for 'gzipreader' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/tmp/gzipreader-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-stamp/gzipreader-mkdir [ 15%] No download step for 'gzipreader' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-stamp/gzipreader-download [ 16%] No update step for 'gzipreader' cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-stamp/gzipreader-update [ 17%] No patch step for 'gzipreader' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-stamp/gzipreader-patch [ 18%] Performing configure step for 'gzipreader' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-build && /usr/local/bin/cmake "-GUnix Makefiles" -S /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -B /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-build CMake Warning (dev) in CMakeLists.txt: No project() command is present. The top-level CMakeLists.txt file must contain a literal, direct call to the project() command. Add a line of code such as project(ProjectName) near the top of the file, but after cmake_minimum_required(). CMake is pretending there is a "project(Project)" command on the first line. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in CMakeLists.txt: cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is Clang 14.0.5 -- The CXX compiler identification is Clang 14.0.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /ccache/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /ccache/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.8s) -- Generating done (0.0s) -- Build files have been written to: /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-build cd /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-stamp/gzipreader-configure [ 19%] Performing build step for 'gzipreader' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-build && /usr/bin/make [ 50%] Building CXX object CMakeFiles/gzip_reader.dir/gzip_reader.cc.o [100%] Linking CXX executable gzip_reader [100%] Built target gzip_reader cd /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-stamp/gzipreader-build [ 20%] No install step for 'gzipreader' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-stamp/gzipreader-install [ 21%] Completed 'gzipreader' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/gzipreader-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/gzipreader-prefix/src/gzipreader-stamp/gzipreader-done [ 21%] Built target gzipreader /usr/bin/make -f CMakeFiles/mmmulti.dir/build.make CMakeFiles/mmmulti.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/mmmulti.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/mmmulti.dir/build.make CMakeFiles/mmmulti.dir/build [ 21%] Creating directories for 'mmmulti' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/tmp/mmmulti-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-stamp/mmmulti-mkdir [ 22%] No download step for 'mmmulti' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-stamp/mmmulti-download [ 23%] No update step for 'mmmulti' cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-stamp/mmmulti-update [ 24%] No patch step for 'mmmulti' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-stamp/mmmulti-patch [ 25%] No configure step for 'mmmulti' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-stamp/mmmulti-configure [ 26%] No build step for 'mmmulti' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-stamp/mmmulti-build [ 27%] No install step for 'mmmulti' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-stamp/mmmulti-install [ 28%] Completed 'mmmulti' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/mmmulti-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-stamp/mmmulti-done [ 28%] Built target mmmulti /usr/bin/make -f CMakeFiles/iitii.dir/build.make CMakeFiles/iitii.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/iitii.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/iitii.dir/build.make CMakeFiles/iitii.dir/build [ 29%] Creating directories for 'iitii' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/tmp/iitii-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-stamp/iitii-mkdir [ 30%] No download step for 'iitii' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-stamp/iitii-download [ 31%] No update step for 'iitii' cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-stamp/iitii-update [ 32%] No patch step for 'iitii' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-stamp/iitii-patch [ 32%] No configure step for 'iitii' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-stamp/iitii-configure [ 33%] No build step for 'iitii' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-stamp/iitii-build [ 34%] No install step for 'iitii' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-stamp/iitii-install [ 35%] Completed 'iitii' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/iitii-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-stamp/iitii-done [ 35%] Built target iitii /usr/bin/make -f CMakeFiles/ips4o.dir/build.make CMakeFiles/ips4o.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/ips4o.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/ips4o.dir/build.make CMakeFiles/ips4o.dir/build [ 36%] Creating directories for 'ips4o' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/tmp/ips4o-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-stamp/ips4o-mkdir [ 37%] No download step for 'ips4o' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-stamp/ips4o-download [ 38%] No update step for 'ips4o' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-stamp/ips4o-update [ 39%] No patch step for 'ips4o' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-stamp/ips4o-patch [ 40%] No configure step for 'ips4o' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-stamp/ips4o-configure [ 40%] No build step for 'ips4o' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-stamp/ips4o-build [ 41%] No install step for 'ips4o' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-stamp/ips4o-install [ 42%] Completed 'ips4o' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/ips4o-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-stamp/ips4o-done [ 42%] Built target ips4o /usr/bin/make -f CMakeFiles/bbhash.dir/build.make CMakeFiles/bbhash.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/bbhash.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/bbhash.dir/build.make CMakeFiles/bbhash.dir/build [ 43%] Creating directories for 'bbhash' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/tmp/bbhash-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-stamp/bbhash-mkdir [ 44%] No download step for 'bbhash' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-stamp/bbhash-download [ 45%] No update step for 'bbhash' cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-stamp/bbhash-update [ 46%] No patch step for 'bbhash' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-stamp/bbhash-patch [ 47%] No configure step for 'bbhash' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-stamp/bbhash-configure [ 48%] No build step for 'bbhash' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-stamp/bbhash-build [ 48%] No install step for 'bbhash' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-stamp/bbhash-install [ 49%] Completed 'bbhash' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/bbhash-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-stamp/bbhash-done [ 49%] Built target bbhash /usr/bin/make -f CMakeFiles/atomicbitvector.dir/build.make CMakeFiles/atomicbitvector.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/atomicbitvector.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/atomicbitvector.dir/build.make CMakeFiles/atomicbitvector.dir/build [ 50%] Creating directories for 'atomicbitvector' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/tmp/atomicbitvector-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-mkdir [ 51%] No download step for 'atomicbitvector' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-download [ 52%] No update step for 'atomicbitvector' cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-update [ 52%] No patch step for 'atomicbitvector' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-patch [ 53%] No configure step for 'atomicbitvector' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-configure [ 54%] No build step for 'atomicbitvector' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-build [ 55%] No install step for 'atomicbitvector' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-install [ 55%] Completed 'atomicbitvector' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/atomicbitvector-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-done [ 55%] Built target atomicbitvector /usr/bin/make -f CMakeFiles/atomicqueue.dir/build.make CMakeFiles/atomicqueue.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/atomicqueue.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/atomicqueue.dir/build.make CMakeFiles/atomicqueue.dir/build [ 55%] Creating directories for 'atomicqueue' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/tmp/atomicqueue-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-mkdir [ 56%] No download step for 'atomicqueue' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-download [ 57%] No update step for 'atomicqueue' cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-update [ 58%] No patch step for 'atomicqueue' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-patch [ 59%] No configure step for 'atomicqueue' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-configure [ 60%] No build step for 'atomicqueue' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-build [ 61%] No install step for 'atomicqueue' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-install [ 62%] Completed 'atomicqueue' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/atomicqueue-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-done [ 62%] Built target atomicqueue /usr/bin/make -f CMakeFiles/ska.dir/build.make CMakeFiles/ska.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/ska.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/ska.dir/build.make CMakeFiles/ska.dir/build [ 63%] Creating directories for 'ska' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/tmp/ska-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-stamp/ska-mkdir [ 64%] No download step for 'ska' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-stamp/ska-download [ 65%] No update step for 'ska' cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-stamp/ska-update [ 66%] No patch step for 'ska' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-stamp/ska-patch [ 66%] No configure step for 'ska' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-stamp/ska-configure [ 67%] No build step for 'ska' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-stamp/ska-build [ 68%] No install step for 'ska' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-stamp/ska-install [ 69%] Completed 'ska' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/ska-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-stamp/ska-done [ 69%] Built target ska /usr/bin/make -f CMakeFiles/paryfor.dir/build.make CMakeFiles/paryfor.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/paryfor.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/paryfor.dir/build.make CMakeFiles/paryfor.dir/build [ 70%] Creating directories for 'paryfor' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/tmp/paryfor-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-mkdir [ 71%] No download step for 'paryfor' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-download [ 72%] No update step for 'paryfor' cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/paryfor && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/paryfor && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-update [ 73%] No patch step for 'paryfor' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-patch [ 74%] No configure step for 'paryfor' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-configure [ 75%] No build step for 'paryfor' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-build [ 75%] No install step for 'paryfor' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-install [ 76%] Completed 'paryfor' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/paryfor-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-done [ 76%] Built target paryfor /usr/bin/make -f CMakeFiles/mio.dir/build.make CMakeFiles/mio.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/mio.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/mio.dir/build.make CMakeFiles/mio.dir/build [ 77%] Creating directories for 'mio' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/tmp/mio-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-mkdir [ 78%] No download step for 'mio' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-download [ 78%] No update step for 'mio' cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-update [ 79%] No patch step for 'mio' /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-patch [ 80%] No configure step for 'mio' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-configure [ 81%] No build step for 'mio' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-build [ 82%] No install step for 'mio' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-install [ 82%] Completed 'mio' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/mio-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-done [ 82%] Built target mio /usr/bin/make -f CMakeFiles/seqwish.dir/build.make CMakeFiles/seqwish.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/seqwish.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/seqwish.dir/build.make CMakeFiles/seqwish.dir/build [ 83%] Building CXX object CMakeFiles/seqwish.dir/src/utils.cpp.o /ccache/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/ips4o 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CMakeFiles/seqwish.dir/src/tempfile.cpp.o /ccache/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/ips4o -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -march=native -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/tempfile.cpp.o -MF CMakeFiles/seqwish.dir/src/tempfile.cpp.o.d -o CMakeFiles/seqwish.dir/src/tempfile.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/tempfile.cpp [ 84%] Building CXX object CMakeFiles/seqwish.dir/src/main.cpp.o /ccache/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/ips4o -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -march=native -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/main.cpp.o -MF CMakeFiles/seqwish.dir/src/main.cpp.o.d -o CMakeFiles/seqwish.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/main.cpp [ 85%] Building CXX object CMakeFiles/seqwish.dir/src/seqindex.cpp.o /ccache/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/ips4o -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/flat_hash_map -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -march=native -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/seqindex.cpp.o -MF CMakeFiles/seqwish.dir/src/seqindex.cpp.o.d -o CMakeFiles/seqwish.dir/src/seqindex.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/seqindex.cpp In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/seqindex.cpp:1: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/seqindex.hpp:11: In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/csa_wt.hpp:24: In file included from /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/wavelet_trees.hpp:41: /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/construct.hpp:124:79: warning: instantiation of variable 'sdsl::key_text_trait<'\b'>::KEY_TEXT' required here, but no definition is available [-Wundefined-var-template] const char* KEY_TEXT = key_text_trait::KEY_TEXT; ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/construct.hpp:90:5: note: in instantiation of function template specialization 'sdsl::construct, sdsl::rank_support_v<'\x01', '\x01'>, sdsl::select_support_mcl<'\x01', '\x01'>, sdsl::select_support_mcl<'\x00', '\x01'>>, 32, 64, sdsl::sa_order_sa_sampling<'\x00'>, sdsl::isa_sampling<'\x00'>, sdsl::byte_alphabet>>' requested here construct(idx, file, config, num_bytes, index_tag); ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/construct.hpp:63:5: note: in instantiation of function template specialization 'sdsl::construct, sdsl::rank_support_v<'\x01', '\x01'>, sdsl::select_support_mcl<'\x01', '\x01'>, sdsl::select_support_mcl<'\x00', '\x01'>>, 32, 64, sdsl::sa_order_sa_sampling<'\x00'>, sdsl::isa_sampling<'\x00'>, sdsl::byte_alphabet>>' requested here construct(idx, file, config, num_bytes); ^ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/src/seqindex.cpp:91:5: note: in instantiation of function template specialization 'sdsl::construct, sdsl::rank_support_v<'\x01', '\x01'>, sdsl::select_support_mcl<'\x01', '\x01'>, sdsl::select_support_mcl<'\x00', '\x01'>>, 32, 64, sdsl::sa_order_sa_sampling<'\x00'>, sdsl::isa_sampling<'\x00'>, sdsl::byte_alphabet>>' requested here construct(seq_name_csa, seqnamefile, 1); ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/config.hpp:51:24: note: forward declaration of template entity is here static const char* KEY_TEXT; ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/construct.hpp:124:79: note: add an explicit instantiation declaration to suppress this warning if 'sdsl::key_text_trait<'\b'>::KEY_TEXT' is explicitly instantiated in another translation unit const char* KEY_TEXT = key_text_trait::KEY_TEXT; ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/construct.hpp:125:78: warning: instantiation of variable 'sdsl::key_bwt_trait<'\b'>::KEY_BWT' required here, but no definition is available [-Wundefined-var-template] const char* KEY_BWT = key_bwt_trait::KEY_BWT; ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/config.hpp:57:24: note: forward declaration of template entity is here static const char* KEY_BWT; ^ /wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include/sdsl/construct.hpp:125:78: note: add an explicit instantiation declaration to suppress this warning if 'sdsl::key_bwt_trait<'\b'>::KEY_BWT' is explicitly instantiated in another translation unit const char* KEY_BWT = key_bwt_trait::KEY_BWT; ^ 2 warnings generated. [ 86%] Building CXX object CMakeFiles/seqwish.dir/src/paf.cpp.o /ccache/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/include -I/wrkdirs/usr/ports/biology/seqwish/work/.build/sdsl-lite-prefix/src/sdsl-lite-build/external/libdivsufsort/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/ips4o -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/mmmulti/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9/deps/atomic_queue/include/atomic_queue 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/usr/bin/make -f CMakeFiles/paryfor.dir/build.make CMakeFiles/paryfor.dir/build [ 76%] Built target paryfor /usr/bin/make -f CMakeFiles/mio.dir/build.make CMakeFiles/mio.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/mio.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/mio.dir/build.make CMakeFiles/mio.dir/build [ 82%] Built target mio /usr/bin/make -f CMakeFiles/seqwish.dir/build.make CMakeFiles/seqwish.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.9 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/seqwish.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/seqwish.dir/build.make CMakeFiles/seqwish.dir/build [100%] Built target seqwish /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall Installing the project stripped... /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/biology/seqwish/work/stage/usr/local/bin/seqwish ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-04-03T00:07:49+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=25d04c675e' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for seqwish-0.7.9 ===> Building seqwish-0.7.9 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for seqwish-0.7.9 build of biology/seqwish | seqwish-0.7.9 ended at Wed Apr 3 01:15:58 BST 2024 build time: 00:08:11