=>> Building biology/seaview build started at Mon Apr 1 02:03:33 BST 2024 port directory: /usr/ports/biology/seaview package name: seaview-5.0.5_2,1 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: bofh@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1498 Jan 18 14:02 /usr/ports/biology/seaview/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: d4329229fb Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 14 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/14/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- bofh@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seaview/work/.cache HOME=/wrkdirs/usr/ports/biology/seaview/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/biology/seaview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seaview/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCACHE_DIR="/root/.ccache" --End CONFIGURE_ENV-- --MAKE_ENV-- HELPFILE='-DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\"' PHYMLNAME='-DPHYMLNAME=\"phyml\"' IFLTK='-I/usr/local/include' LFLTK='-L/usr/local/lib' USE_XFT='-DUSE_XFT' OPT="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seaview/work/.cache HOME=/wrkdirs/usr/ports/biology/seaview/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/biology/seaview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seaview/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seaview" EXAMPLESDIR="share/examples/seaview" DATADIR="share/seaview" WWWDIR="www/seaview" ETCDIR="etc/seaview" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seaview DOCSDIR=/usr/local/share/doc/seaview EXAMPLESDIR=/usr/local/share/examples/seaview WWWDIR=/usr/local/www/seaview ETCDIR=/usr/local/etc/seaview --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seaview-5.0.5_2,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> seaview-5.0.5_2,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seaview-5.0.5_2,1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by seaview-5.0.5_2,1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by seaview-5.0.5_2,1 for building => SHA256 Checksum OK for seaview_5.0.5.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by seaview-5.0.5_2,1 for building ===> Extracting for seaview-5.0.5_2,1 => SHA256 Checksum OK for seaview_5.0.5.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for seaview-5.0.5_2,1 /usr/bin/sed -i.bak -e 's|^\(CC\) |#\1 | ; s|-ldl || ; s|^\(CXX\) |#\1 |' /wrkdirs/usr/ports/biology/seaview/work/seaview/Makefile echo 'boolean javarun;' >> /wrkdirs/usr/ports/biology/seaview/work/seaview/csrc/phylip.c =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seaview-5.0.5_2,1 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg-builder.dan.net.uk] Installing gmake-4.4.1... [pkg-builder.dan.net.uk] `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] Extracting gmake-4.4.1: .......... done ===> seaview-5.0.5_2,1 depends on package: gmake>=4.4.1 - found ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found ===> Installing existing package /packages/All/libX11-1.8.7_1,1.pkg [pkg-builder.dan.net.uk] Installing libX11-1.8.7_1,1... [pkg-builder.dan.net.uk] `-- Installing libxcb-1.16.1... [pkg-builder.dan.net.uk] | `-- Installing libXau-1.0.9_1... [pkg-builder.dan.net.uk] | `-- Extracting libXau-1.0.9_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libXdmcp-1.1.5... [pkg-builder.dan.net.uk] | | `-- Installing xorgproto-2023.2... [pkg-builder.dan.net.uk] | | `-- Extracting xorgproto-2023.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libXdmcp-1.1.5: ...... done [pkg-builder.dan.net.uk] `-- Extracting libxcb-1.16.1: .......... done [pkg-builder.dan.net.uk] Extracting libX11-1.8.7_1,1: .......... done ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xcursor.pc - not found ===> Installing existing package /packages/All/libXcursor-1.2.2.pkg [pkg-builder.dan.net.uk] Installing libXcursor-1.2.2... [pkg-builder.dan.net.uk] `-- Installing libXfixes-6.0.0_1... [pkg-builder.dan.net.uk] `-- Extracting libXfixes-6.0.0_1: ....... done [pkg-builder.dan.net.uk] `-- Installing libXrender-0.9.10_2... [pkg-builder.dan.net.uk] `-- Extracting libXrender-0.9.10_2: ....... done [pkg-builder.dan.net.uk] Extracting libXcursor-1.2.2: .......... done ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xcursor.pc - found ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - not found ===> Installing existing package /packages/All/libXext-1.3.6,1.pkg [pkg-builder.dan.net.uk] Installing libXext-1.3.6,1... [pkg-builder.dan.net.uk] Extracting libXext-1.3.6,1: .......... done ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xfixes.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xft.pc - not found ===> Installing existing package /packages/All/libXft-2.3.7_1.pkg [pkg-builder.dan.net.uk] Installing libXft-2.3.7_1... [pkg-builder.dan.net.uk] `-- Installing fontconfig-2.15.0_2,1... [pkg-builder.dan.net.uk] | `-- Installing expat-2.6.1... [pkg-builder.dan.net.uk] | `-- Extracting expat-2.6.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing freetype2-2.13.2... [pkg-builder.dan.net.uk] | `-- Extracting freetype2-2.13.2: .......... done [pkg-builder.dan.net.uk] `-- Extracting fontconfig-2.15.0_2,1: .......... done [pkg-builder.dan.net.uk] Extracting libXft-2.3.7_1: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ===== Message from freetype2-2.13.2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xft.pc - found ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xinerama.pc - not found ===> Installing existing package /packages/All/libXinerama-1.1.4_3,1.pkg [pkg-builder.dan.net.uk] Installing libXinerama-1.1.4_3,1... [pkg-builder.dan.net.uk] Extracting libXinerama-1.1.4_3,1: .......... done ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xinerama.pc - found ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xrender.pc - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seaview-5.0.5_2,1 depends on shared library: libfltk.so - not found ===> Installing existing package /packages/All/fltk-1.3.9_1.pkg [pkg-builder.dan.net.uk] Installing fltk-1.3.9_1... [pkg-builder.dan.net.uk] `-- Installing jpeg-turbo-3.0.2... [pkg-builder.dan.net.uk] `-- Extracting jpeg-turbo-3.0.2: .......... done [pkg-builder.dan.net.uk] `-- Installing libGLU-9.0.2_2... [pkg-builder.dan.net.uk] | `-- Installing libglvnd-1.7.0... [pkg-builder.dan.net.uk] | `-- Extracting libglvnd-1.7.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting libGLU-9.0.2_2: ..... done [pkg-builder.dan.net.uk] `-- Installing png-1.6.43... [pkg-builder.dan.net.uk] `-- Extracting png-1.6.43: .......... done [pkg-builder.dan.net.uk] Extracting fltk-1.3.9_1: .......... done ===> seaview-5.0.5_2,1 depends on shared library: libfltk.so - found (/usr/local/lib/libfltk.so) ===> Returning to build of seaview-5.0.5_2,1 ===> seaview-5.0.5_2,1 depends on shared library: libfontconfig.so - found (/usr/local/lib/libfontconfig.so) ===> seaview-5.0.5_2,1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> seaview-5.0.5_2,1 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so) =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for seaview-5.0.5_2,1 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for seaview-5.0.5_2,1 c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF seaview.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF custom.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF use_mase_files.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF regions.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF load_seq.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF align.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF xfmatpt.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF comlines.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF resource.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF nexus.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF viewasprots.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF racnuc_fetch.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF concatenate.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF statistics.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF trees.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treedraw.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF least_squares_brl.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pseudoterminal.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF unrooted.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pdf_or_ps.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF svg.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF threads.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF tbe.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treerecs_draw.cxx c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF FL/Fl_SVG_Image.cxx cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/raa_acnuc.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/parser.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/md5.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/zsockr.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/misc_acnuc.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/dnapars.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/protpars.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/seq.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/phylip.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/lwl.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/bionj.c cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/phyml_util.c c++ -o seaview -fstack-protector-strong seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -lpthread -lz -Wl,-z,muldefs =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xcursor.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xfixes.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xft.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xinerama.pc - found ===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xrender.pc - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for seaview-5.0.5_2,1 ===> Generating temporary packing list (cd /wrkdirs/usr/ports/biology/seaview/work/seaview && install -s -m 555 seaview /wrkdirs/usr/ports/biology/seaview/work/stage/usr/local/bin) (cd /wrkdirs/usr/ports/biology/seaview/work/seaview && install -m 444 seaview.1 /wrkdirs/usr/ports/biology/seaview/work/stage/usr/local/share/man/man1) /bin/mkdir -p /wrkdirs/usr/ports/biology/seaview/work/stage/usr/local/share/seaview (cd /wrkdirs/usr/ports/biology/seaview/work/seaview && install -m 0644 seaview.html /wrkdirs/usr/ports/biology/seaview/work/stage/usr/local/share/seaview) (cd /wrkdirs/usr/ports/biology/seaview/work/seaview && install -m 0644 seaview.xpm /wrkdirs/usr/ports/biology/seaview/work/stage/usr/local/share/pixmaps) ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-04-01T01:03:33+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=d4329229fb' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for seaview-5.0.5_2,1 ===> Building seaview-5.0.5_2,1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for seaview-5.0.5_2,1 build of biology/seaview | seaview-5.0.5_2,1 ended at Mon Apr 1 02:04:16 BST 2024 build time: 00:00:43