=>> Building science/rdkit build started at Fri Mar 29 06:24:17 GMT 2024 port directory: /usr/ports/science/rdkit package name: rdkit-2023.09.6 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2540 Mar 13 17:24 /usr/ports/science/rdkit/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: e7c943f4df Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for rdkit-2023.09.6: DOCS=on: Build and/or install documentation PGSQL=off: Build the PostgreSQL cartridge PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/rdkit/work/.cache HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/rdkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCACHE_DIR="/root/.ccache" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/rdkit/work/.cache HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/rdkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/rdkit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- SHLIB_VER=2023.09.6 PORTDOCS="" DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " LITTLE_ENDIAN="" CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/RDKit" EXAMPLESDIR="share/examples/rdkit" DATADIR="share/RDKit" WWWDIR="www/rdkit" ETCDIR="etc/rdkit" --End PLIST_SUB-- --SUB_LIST-- DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/RDKit DOCSDIR=/usr/local/share/doc/RDKit EXAMPLESDIR=/usr/local/share/examples/rdkit WWWDIR=/usr/local/www/rdkit ETCDIR=/usr/local/etc/rdkit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> rdkit-2023.09.6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> rdkit-2023.09.6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of rdkit-2023.09.6 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by rdkit-2023.09.6 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by rdkit-2023.09.6 for building => SHA256 Checksum OK for rdkit-2023.09.6/Comic_Neue.zip. => SHA256 Checksum OK for rdkit-2023.09.6/rdkit-rdkit-Release_2023_09_6_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2023.09.6/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by rdkit-2023.09.6 for building ===> Extracting for rdkit-2023.09.6 => SHA256 Checksum OK for rdkit-2023.09.6/Comic_Neue.zip. => SHA256 Checksum OK for rdkit-2023.09.6/rdkit-rdkit-Release_2023_09_6_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2023.09.6/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz. Archive: /portdistfiles/rdkit-2023.09.6/Comic_Neue.zip extracting: OFL.txt extracting: ComicNeue-Light.ttf extracting: ComicNeue-LightItalic.ttf extracting: ComicNeue-Regular.ttf extracting: ComicNeue-Italic.ttf extracting: ComicNeue-Bold.ttf extracting: ComicNeue-BoldItalic.ttf =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for rdkit-2023.09.6 ===> Applying FreeBSD patches for rdkit-2023.09.6 from /usr/ports/science/rdkit/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> rdkit-2023.09.6 depends on package: catch>0 - not found ===> Installing existing package /packages/All/catch-2.13.10.pkg [pkg-builder.dan.net.uk] Installing catch-2.13.10... [pkg-builder.dan.net.uk] Extracting catch-2.13.10: .......... done ===> rdkit-2023.09.6 depends on package: catch>0 - found ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on executable: flex - found ===> rdkit-2023.09.6 depends on package: rapidjson>=0 - not found ===> Installing existing package /packages/All/rapidjson-1.1.0.709.pkg [pkg-builder.dan.net.uk] Installing rapidjson-1.1.0.709... [pkg-builder.dan.net.uk] Extracting rapidjson-1.1.0.709: .......... done ===> rdkit-2023.09.6 depends on package: rapidjson>=0 - found ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on package: py39-numpy>=1.16,1<1.26,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg [pkg-builder.dan.net.uk] Installing py39-numpy-1.25.0_6,1... [pkg-builder.dan.net.uk] `-- Installing gcc13-13.2.0_4... [pkg-builder.dan.net.uk] | `-- Installing binutils-2.40_5,1... [pkg-builder.dan.net.uk] | | `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] | | `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.5_1... [pkg-builder.dan.net.uk] | | `-- Installing liblz4-1.9.4_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting liblz4-1.9.4_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.5_1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting binutils-2.40_5,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | `-- Installing mpfr-4.2.1,1... [pkg-builder.dan.net.uk] | | `-- Extracting mpfr-4.2.1,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] `-- Extracting gcc13-13.2.0_4: .......... done create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) [pkg-builder.dan.net.uk] `-- Installing openblas-0.3.25,2... [pkg-builder.dan.net.uk] `-- Extracting openblas-0.3.25,2: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-setuptools-63.1.0_1... [pkg-builder.dan.net.uk] | `-- Installing python39-3.9.18_1... [pkg-builder.dan.net.uk] | | `-- Installing libffi-3.4.4_1... [pkg-builder.dan.net.uk] | | `-- Extracting libffi-3.4.4_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing mpdecimal-2.5.1... [pkg-builder.dan.net.uk] | | `-- Extracting mpdecimal-2.5.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing openssl-3.0.13_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting openssl-3.0.13_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing readline-8.2.10... [pkg-builder.dan.net.uk] | | `-- Extracting readline-8.2.10: .......... done [pkg-builder.dan.net.uk] | `-- Extracting python39-3.9.18_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-setuptools-63.1.0_1: .......... done [pkg-builder.dan.net.uk] `-- Installing suitesparse-umfpack-6.3.2... [pkg-builder.dan.net.uk] | `-- Installing suitesparse-amd-3.3.1... [pkg-builder.dan.net.uk] | | `-- Installing suitesparse-config-7.6.1... [pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-config-7.6.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-amd-3.3.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-camd-3.3.1... [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-camd-3.3.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-ccolamd-3.3.2... [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-ccolamd-3.3.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-cholmod-5.2.0... [pkg-builder.dan.net.uk] | | `-- Installing suitesparse-colamd-3.3.2... [pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-colamd-3.3.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-cholmod-5.2.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting suitesparse-umfpack-6.3.2: .......... done [pkg-builder.dan.net.uk] Extracting py39-numpy-1.25.0_6,1: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> rdkit-2023.09.6 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on executable: bison - not found ===> Installing existing package /packages/All/bison-3.8.2_1,1.pkg [pkg-builder.dan.net.uk] Installing bison-3.8.2_1,1... [pkg-builder.dan.net.uk] `-- Installing libtextstyle-0.22.3... [pkg-builder.dan.net.uk] `-- Extracting libtextstyle-0.22.3: .......... done [pkg-builder.dan.net.uk] `-- Installing m4-1.4.19_1,1... [pkg-builder.dan.net.uk] | `-- Installing libsigsegv-2.14... [pkg-builder.dan.net.uk] | `-- Extracting libsigsegv-2.14: ..... done [pkg-builder.dan.net.uk] `-- Extracting m4-1.4.19_1,1: .......... done [pkg-builder.dan.net.uk] Extracting bison-3.8.2_1,1: .......... done ===== Message from libsigsegv-2.14: -- Note that the stackoverflow handling functions of this library need procfs mounted on /proc. ===> rdkit-2023.09.6 depends on executable: bison - found ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.3.pkg [pkg-builder.dan.net.uk] Installing cmake-core-3.28.3... [pkg-builder.dan.net.uk] `-- Installing expat-2.6.1... [pkg-builder.dan.net.uk] `-- Extracting expat-2.6.1: .......... done [pkg-builder.dan.net.uk] `-- Installing jsoncpp-1.9.5... [pkg-builder.dan.net.uk] `-- Extracting jsoncpp-1.9.5: .......... done [pkg-builder.dan.net.uk] `-- Installing libuv-1.48.0... [pkg-builder.dan.net.uk] `-- Extracting libuv-1.48.0: .......... done [pkg-builder.dan.net.uk] `-- Installing rhash-1.4.4_1... [pkg-builder.dan.net.uk] `-- Extracting rhash-1.4.4_1: .......... done [pkg-builder.dan.net.uk] Extracting cmake-core-3.28.3: .......... done ===> rdkit-2023.09.6 depends on file: /usr/local/bin/cmake - found ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,2.pkg [pkg-builder.dan.net.uk] Installing ninja-1.11.1,2... [pkg-builder.dan.net.uk] Extracting ninja-1.11.1,2: ..... done ===> rdkit-2023.09.6 depends on executable: ninja - found ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.4.0_3.pkg [pkg-builder.dan.net.uk] Installing eigen-3.4.0_3... [pkg-builder.dan.net.uk] `-- Installing blas-3.12.0_1... [pkg-builder.dan.net.uk] `-- Extracting blas-3.12.0_1: ..... done [pkg-builder.dan.net.uk] `-- Installing lapack-3.12.0_2... [pkg-builder.dan.net.uk] `-- Extracting lapack-3.12.0_2: .......... done [pkg-builder.dan.net.uk] Extracting eigen-3.4.0_3: .......... done ===> rdkit-2023.09.6 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> rdkit-2023.09.6 depends on shared library: libboost_system.so - not found ===> Installing existing package /packages/All/boost-libs-1.84.0.pkg [pkg-builder.dan.net.uk] Installing boost-libs-1.84.0... [pkg-builder.dan.net.uk] `-- Installing icu-74.2,1... [pkg-builder.dan.net.uk] `-- Extracting icu-74.2,1: .......... done [pkg-builder.dan.net.uk] Extracting boost-libs-1.84.0: .......... done ===== Message from boost-libs-1.84.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> rdkit-2023.09.6 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so) ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on shared library: libcoordgen.so - not found ===> Installing existing package /packages/All/coordgenlibs-3.0.2.pkg [pkg-builder.dan.net.uk] Installing coordgenlibs-3.0.2... [pkg-builder.dan.net.uk] `-- Installing maeparser-1.3.1_3... [pkg-builder.dan.net.uk] `-- Extracting maeparser-1.3.1_3: .......... done [pkg-builder.dan.net.uk] Extracting coordgenlibs-3.0.2: .......... done ===> rdkit-2023.09.6 depends on shared library: libcoordgen.so - found (/usr/local/lib/libcoordgen.so) ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on shared library: libfreetype.so - not found ===> Installing existing package /packages/All/freetype2-2.13.2.pkg [pkg-builder.dan.net.uk] Installing freetype2-2.13.2... [pkg-builder.dan.net.uk] Extracting freetype2-2.13.2: .......... done ===== Message from freetype2-2.13.2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===> rdkit-2023.09.6 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on shared library: libmaeparser.so - found (/usr/local/lib/libmaeparser.so) ===> rdkit-2023.09.6 depends on shared library: libboost_python39.so - not found ===> Installing existing package /packages/All/py39-boost-libs-1.84.0.pkg [pkg-builder.dan.net.uk] Installing py39-boost-libs-1.84.0... [pkg-builder.dan.net.uk] Extracting py39-boost-libs-1.84.0: .......... done ===== Message from py39-boost-libs-1.84.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> rdkit-2023.09.6 depends on shared library: libboost_python39.so - found (/usr/local/lib/libboost_python39.so) ===> Returning to build of rdkit-2023.09.6 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for rdkit-2023.09.6 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/rdkit/work/.build -- The C compiler identification is Clang 14.0.5 -- The CXX compiler identification is Clang 14.0.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /ccache/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /ccache/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning at CMakeLists.txt:153 (find_package): Could not find a configuration file for package "Catch2" that is compatible with requested version "3". The following configuration files were considered but not accepted: /usr/local/lib/cmake/Catch2/Catch2Config.cmake, version: 2.13.10 CMake Warning (dev) at CMakeLists.txt:293 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.9 (found version "3.9.18") CMake Warning (dev) at CMakeLists.txt:302 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/local/lib/libpython3.9.so (found version "3.9.18") CMake Warning (dev) at Code/cmake/Modules/FindNumPy.cmake:10 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:317 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at Code/cmake/Modules/FindNumPy.cmake:14 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. Call Stack (most recent call first): CMakeLists.txt:317 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:2240 (message): No header defined for python-py39; skipping header check (note: header-only libraries have no designated component) Call Stack (most recent call first): CMakeLists.txt:331 (find_package) Python Install directory /usr/local/lib/python3.9/site-packages PYTHON Py_ENABLE_SHARED: 1 PYTHON USING LINK LINE: -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong nbval not found, disabling the jupyter tests -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Boost: /usr/local/include (found suitable version "1.84.0", minimum required is "1.58.0") found components: system serialization iostreams regex -- Found Boost: /usr/local/include (found suitable version "1.84.0", minimum required is "1.58.0") found components: system iostreams regex == Using strict rotor definition -- maeparser include dir set as '/usr/local/include' -- maeparser libraries set as '/usr/local/lib/libmaeparser.so' -- Found maeparser: /usr/local/include -- coordgen include dir set as /usr/local/include -- coordgen libraries set as '/usr/local/lib/libcoordgen.so' -- Found coordgen: /usr/local/include -- Found RingDecomposerLib source in /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib CMake Warning (dev) at Code/GraphMol/FilterCatalog/CMakeLists.txt:5 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. == Updating Filters.cpp from pains file == Done updating pains files /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Data/Fonts/ComicNeue-Regular.ttf already there, skipping the download -- Found Freetype: /usr/local/lib/libfreetype.so (found version "2.13.2") -- Found Boost: /usr/local/include (found suitable version "1.84.0", minimum required is "1.58.0") found components: program_options -- Found RapidJSON source in /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -- Configuring done (3.4s) -- Generating done (0.7s) CMake Warning: Manually-specified variables were not used by the project: CATCH_DIR CMAKE_COLOR_MAKEFILE CMAKE_VERBOSE_MAKEFILE Python3_EXECUTABLE Python_EXECUTABLE RDK_OPTIMIZE_NATIVE -- Build files have been written to: /wrkdirs/usr/ports/science/rdkit/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for rdkit-2023.09.6 [ 0% 1/640] cd /wrkdirs/usr/ports/science/rdkit/work/.build/External/INCHI-API && /usr/local/bin/cmake -E copy /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/INCHI-API/python/noinchi.py /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/rdkit/Chem/inchi.py [ 0% 2/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdCoordGen_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -MF External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o.d -o External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/CoordGen/Wrap/rdCoordGen.cpp [ 0% 3/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c [ 0% 4/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c [ 0% 5/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c [ 0% 6/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c [ 1% 7/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c [ 1% 8/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c [ 1% 9/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c [ 1% 10/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c [ 1% 11/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c [ 1% 12/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c [ 2% 13/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c [ 2% 14/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c [ 2% 15/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c.o -MF External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c.o.d -o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c [ 2% 16/640] : && /ccache/libexec/ccache/cc -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitRingDecomposerLib.so.1 -o lib/libRDKitRingDecomposerLib.so.1.2023.09.6 External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c.o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c.o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c.o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c.o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c.o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c.o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c.o External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c.o -Wl,-rpath,/usr/local/lib: -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 2% 17/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1 lib/libRDKitRingDecomposerLib.so && : [ 2% 18/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dga_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/GA/CMakeFiles/ga.dir/ga/StringChromosome.cpp.o -MF External/GA/CMakeFiles/ga.dir/ga/StringChromosome.cpp.o.d -o External/GA/CMakeFiles/ga.dir/ga/StringChromosome.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/GA/ga/StringChromosome.cpp [ 2% 19/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dga_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/GA/CMakeFiles/ga.dir/ga/Chromosome.cpp.o -MF External/GA/CMakeFiles/ga.dir/ga/Chromosome.cpp.o.d -o External/GA/CMakeFiles/ga.dir/ga/Chromosome.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/GA/ga/Chromosome.cpp [ 3% 20/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dga_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/GA/CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o -MF External/GA/CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o.d -o External/GA/CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/GA/ga/IntegerStringChromosomePolicy.cpp [ 3% 21/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dga_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o -MF External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o.d -o External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/GA/ga/BinaryStringChromosomePolicy.cpp [ 3% 22/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dga_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/GA/CMakeFiles/ga.dir/util/RandomUtil.cpp.o -MF External/GA/CMakeFiles/ga.dir/util/RandomUtil.cpp.o.d -o External/GA/CMakeFiles/ga.dir/util/RandomUtil.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/GA/util/RandomUtil.cpp [ 3% 23/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dga_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/GA/CMakeFiles/ga.dir/util/Util.cpp.o -MF External/GA/CMakeFiles/ga.dir/util/Util.cpp.o.d -o External/GA/CMakeFiles/ga.dir/util/Util.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/GA/util/Util.cpp [ 3% 24/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitga.so.1 -o lib/libRDKitga.so.1.2023.09.6 External/GA/CMakeFiles/ga.dir/ga/StringChromosome.cpp.o External/GA/CMakeFiles/ga.dir/ga/Chromosome.cpp.o External/GA/CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o External/GA/CMakeFiles/ga.dir/util/RandomUtil.cpp.o External/GA/CMakeFiles/ga.dir/util/Util.cpp.o -Wl,-rpath,/usr/local/lib: -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 3% 25/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitga.so.1.2023.09.6 lib/libRDKitga.so.1 lib/libRDKitga.so && : [ 4% 26/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o -MF Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o.d -o Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/RDGeneral/Invariant.cpp [ 4% 27/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o -MF Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o.d -o Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/RDGeneral/types.cpp [ 4% 28/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o -MF Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o.d -o Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/RDGeneral/utils.cpp [ 4% 29/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -MF Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o.d -o Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/RDGeneral/RDGeneralExceptions.cpp [ 4% 30/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o -MF Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o.d -o Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/RDGeneral/RDLog.cpp [ 4% 31/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -MF Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o.d -o Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/RDGeneral/LocaleSwitcher.cpp [ 5% 32/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_BOOST_STACKTRACE -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o -MF Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o.d -o Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/RDGeneral/versions.cpp [ 5% 33/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o lib/libRDKitRDGeneral.so.1.2023.09.6 Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o -Wl,-rpath,/usr/local/lib: -ldl -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 5% 34/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitRDGeneral.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1 lib/libRDKitRDGeneral.so && : [ 5% 35/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o -MF Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o.d -o Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/RDBoost/Wrap.cpp [ 5% 36/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitRDBoost.so.1 -o lib/libRDKitRDBoost.so.1.2023.09.6 Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so && : [ 5% 37/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitRDBoost.so.1 lib/libRDKitRDBoost.so && : [ 5% 38/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdBase_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o -MF Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o.d -o Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/RDBoost/Wrap/RDBase.cpp [ 6% 39/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/rdBase.so Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 6% 40/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RDSTREAMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRDStreams_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o -MF Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o.d -o Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/RDStreams/streams.cpp [ 6% 41/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitRDStreams.so.1 -o lib/libRDKitRDStreams.so.1.2023.09.6 Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o -Wl,-rpath,/usr/local/lib: -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 6% 42/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitRDStreams.so.1.2023.09.6 lib/libRDKitRDStreams.so.1 lib/libRDKitRDStreams.so && : [ 6% 43/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o -MF Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o.d -o Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/BitVect.cpp [ 6% 44/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -MF Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o.d -o Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/SparseBitVect.cpp [ 7% 45/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -MF Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o.d -o Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/ExplicitBitVect.cpp [ 7% 46/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o -MF Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o.d -o Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/Utils.cpp [ 7% 47/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o -MF Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o.d -o Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/base64.cpp [ 7% 48/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o -MF Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o.d -o Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/BitOps.cpp [ 7% 49/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -MF Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o.d -o Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/DiscreteDistMat.cpp [ 7% 50/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -MF Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o.d -o Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/DiscreteValueVect.cpp [ 7% 51/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o -MF Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o.d -o Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/FPBReader.cpp [ 8% 52/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -MF Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o.d -o Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/MultiFPBReader.cpp [ 8% 53/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitDataStructs.so.1 -o lib/libRDKitDataStructs.so.1.2023.09.6 Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 8% 54/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitDataStructs.so.1 lib/libRDKitDataStructs.so && : [ 8% 55/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -MF Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o.d -o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/Wrap/DataStructs.cpp [ 8% 56/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -MF Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o.d -o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/Wrap/DiscreteValueVect.cpp [ 8% 57/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -MF Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o.d -o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/Wrap/SparseIntVect.cpp [ 9% 58/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -MF Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o.d -o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/Wrap/wrap_SparseBV.cpp [ 9% 59/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -MF Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o.d -o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp [ 9% 60/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -MF Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o.d -o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/Wrap/wrap_BitOps.cpp [ 9% 61/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -MF Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o.d -o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/Wrap/wrap_FPB.cpp [ 9% 62/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -MF Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o.d -o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataStructs/Wrap/wrap_Utils.cpp [ 9% 63/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/DataStructs/cDataStructs.so Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 10% 64/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o -MF Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o.d -o Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Geometry/point.cpp [ 10% 65/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -MF Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o.d -o Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Geometry/Transform2D.cpp [ 10% 66/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -MF Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o.d -o Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Geometry/Transform3D.cpp [ 10% 67/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -MF Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o.d -o Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Geometry/UniformGrid3D.cpp [ 10% 68/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -MF Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o.d -o Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Geometry/GridUtils.cpp [ 10% 69/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o lib/libRDKitRDGeometryLib.so.1.2023.09.6 Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 10% 70/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1 lib/libRDKitRDGeometryLib.so && : [ 11% 71/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdGeometry_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o -MF Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o.d -o Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Geometry/Wrap/Point.cpp [ 11% 72/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdGeometry_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -MF Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o.d -o Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Geometry/Wrap/UniformGrid3D.cpp [ 11% 73/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdGeometry_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -MF Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o.d -o Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Geometry/Wrap/rdGeometry.cpp [ 11% 74/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Geometry/rdGeometry.so Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 11% 75/640] /ccache/libexec/ccache/c++ -DAlignment_EXPORTS -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o -MF Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o.d -o Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Numerics/Alignment/AlignPoints.cpp [ 11% 76/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitAlignment.so.1 -o lib/libRDKitAlignment.so.1.2023.09.6 Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 12% 77/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitAlignment.so.1 lib/libRDKitAlignment.so && : [ 12% 78/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdAlignment_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -MF Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o.d -o Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Numerics/Alignment/Wrap/rdAlignment.cpp [ 12% 79/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Numerics/rdAlignment.so Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 12% 80/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -MF Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o.d -o Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp [ 12% 81/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o lib/libRDKitEigenSolvers.so.1.2023.09.6 Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 12% 82/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1 lib/libRDKitEigenSolvers.so && : [ 12% 83/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -MF Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o.d -o Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Numerics/Optimizer/BFGSOpt.cpp [ 13% 84/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -MF Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o.d -o Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Numerics/Optimizer/LinearSearch.cpp [ 13% 85/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/ForceField.cpp [ 13% 86/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/UFF/AngleBend.cpp [ 13% 87/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/UFF/BondStretch.cpp [ 13% 88/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/UFF/Nonbonded.cpp [ 13% 89/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/UFF/Inversion.cpp [ 14% 90/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/UFF/TorsionAngle.cpp [ 14% 91/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/UFF/DistanceConstraint.cpp [ 14% 92/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/UFF/AngleConstraint.cpp [ 14% 93/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/UFF/TorsionConstraint.cpp [ 14% 94/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/UFF/PositionConstraint.cpp [ 14% 95/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/UFF/Params.cpp [ 15% 96/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/MMFF/AngleBend.cpp [ 15% 97/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/MMFF/BondStretch.cpp [ 15% 98/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/MMFF/StretchBend.cpp [ 15% 99/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/MMFF/OopBend.cpp [ 15% 100/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/MMFF/TorsionAngle.cpp [ 15% 101/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/MMFF/Nonbonded.cpp [ 15% 102/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/MMFF/DistanceConstraint.cpp [ 16% 103/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/MMFF/AngleConstraint.cpp [ 16% 104/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/MMFF/TorsionConstraint.cpp [ 16% 105/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/MMFF/PositionConstraint.cpp [ 16% 106/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -MF Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o.d -o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/MMFF/Params.cpp [ 16% 107/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdForceField_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o -MF Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o.d -o Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ForceField/Wrap/ForceField.cpp [ 16% 108/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -MF Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o.d -o Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DistGeom/DistGeomUtils.cpp [ 17% 109/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -MF Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o.d -o Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DistGeom/TriangleSmooth.cpp [ 17% 110/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -MF Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o.d -o Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DistGeom/DistViolationContrib.cpp [ 17% 111/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -MF Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o.d -o Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DistGeom/ChiralViolationContrib.cpp [ 17% 112/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o -MF Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o.d -o Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DistGeom/Wrap/DistGeom.cpp [ 17% 113/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o -MF Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o.d -o Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Catalogs/Catalog.cpp [ 17% 114/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -MF Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o.d -o Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Catalogs/CatalogParams.cpp [ 17% 115/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -MF Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o.d -o Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/Catalogs/CatalogEntry.cpp [ 18% 116/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitCatalogs.so.1 -o lib/libRDKitCatalogs.so.1.2023.09.6 Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 18% 117/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitCatalogs.so.1 lib/libRDKitCatalogs.so && : [ 18% 118/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Atom.cpp [ 18% 119/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/QueryAtom.cpp [ 18% 120/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/QueryBond.cpp [ 18% 121/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Bond.cpp [ 19% 122/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolOps.cpp [ 19% 123/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FindRings.cpp [ 19% 124/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ROMol.cpp [ 19% 125/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RWMol.cpp [ 19% 126/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/PeriodicTable.cpp [ 19% 127/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/atomic_data.cpp [ 20% 128/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/QueryOps.cpp [ 20% 129/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolPickler.cpp [ 20% 130/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Canon.cpp [ 20% 131/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/AtomIterators.cpp [ 20% 132/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/BondIterators.cpp [ 20% 133/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Aromaticity.cpp [ 20% 134/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Kekulize.cpp [ 21% 135/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ConjugHybrid.cpp [ 21% 136/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/AddHs.cpp [ 21% 137/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Matrices.cpp [ 21% 138/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Chirality.cpp [ 21% 139/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RingInfo.cpp [ 21% 140/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Conformer.cpp [ 22% 141/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Renumber.cpp [ 22% 142/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/AdjustQuery.cpp [ 22% 143/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Resonance.cpp [ 22% 144/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/StereoGroup.cpp [ 22% 145/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/new_canon.cpp [ 22% 146/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SubstanceGroup.cpp [ 22% 147/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FindStereo.cpp [ 23% 148/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MonomerInfo.cpp [ 23% 149/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/NontetrahedralStereo.cpp [ 23% 150/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -MF Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o.d -o Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/WedgeBonds.cpp [ 23% 151/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitGraphMol.so.1 -o lib/libRDKitGraphMol.so.1.2023.09.6 Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 23% 152/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitGraphMol.so.1 lib/libRDKitGraphMol.so && : [ 23% 153/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -MF Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o.d -o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SmilesParse/SmilesParse.cpp [ 24% 154/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -MF Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o.d -o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SmilesParse/SmilesParseOps.cpp [ 24% 155/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -MF Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o.d -o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SmilesParse/SmilesWrite.cpp [ 24% 156/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -MF Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o.d -o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SmilesParse/SmartsWrite.cpp [ 24% 157/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -MF Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o.d -o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SmilesParse/CXSmilesOps.cpp [ 24% 158/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -MF Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o.d -o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SmilesParse/smarts.tab.cpp [ 24% 159/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -MF Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o.d -o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SmilesParse/smiles.tab.cpp [ 25% 160/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -MF Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o.d -o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SmilesParse/lex.yysmarts.cpp [ 25% 161/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -MF Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o.d -o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SmilesParse/lex.yysmiles.cpp [ 25% 162/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o lib/libRDKitSmilesParse.so.1.2023.09.6 Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 25% 163/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1 lib/libRDKitSmilesParse.so && : [ 25% 164/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o -MF Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o.d -o Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Depictor/RDDepictor.cpp [ 25% 165/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -MF Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o.d -o Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Depictor/EmbeddedFrag.cpp [ 25% 166/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o -MF Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o.d -o Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Depictor/DepictUtils.cpp [ 26% 167/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o -MF Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o.d -o Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Depictor/Templates.cpp [ 26% 168/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DIN_COORDGEN -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdDepictor_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -MF Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o.d -o Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp [ 26% 169/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMarvinParser_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MARVINPARSER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinParser.cpp.o -MF Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinParser.cpp.o.d -o Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MarvinParse/MarvinParser.cpp [ 26% 170/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMarvinParser_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MARVINPARSER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinWriter.cpp.o -MF Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinWriter.cpp.o.d -o Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MarvinParse/MarvinWriter.cpp [ 26% 171/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMarvinParser_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MARVINPARSER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o -MF Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o.d -o Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MarvinParse/MarvinDefs.cpp [ 26% 172/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/CDXMLParser.cpp [ 27% 173/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/Mol2FileParser.cpp [ 27% 174/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/MolFileParser.cpp [ 27% 175/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/MolSGroupParsing.cpp [ 27% 176/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/MolSGroupWriting.cpp [ 27% 177/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/MolFileStereochem.cpp [ 27% 178/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/MolFileWriter.cpp [ 27% 179/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp [ 28% 180/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/SDMolSupplier.cpp [ 28% 181/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/SDWriter.cpp [ 28% 182/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp [ 28% 183/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/SmilesWriter.cpp [ 28% 184/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/TDTMolSupplier.cpp [ 28% 185/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/TDTWriter.cpp [ 29% 186/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/TplFileParser.cpp [ 29% 187/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/TplFileWriter.cpp [ 29% 188/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/PDBParser.cpp [ 29% 189/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/PDBWriter.cpp [ 29% 190/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/PDBSupplier.cpp [ 29% 191/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/CMLWriter.cpp [ 30% 192/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/XYZFileWriter.cpp [ 30% 193/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/XYZFileParser.cpp [ 30% 194/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/MaeMolSupplier.cpp [ 30% 195/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeWriter.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeWriter.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/MaeWriter.cpp [ 30% 196/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/ProximityBonds.cpp [ 30% 197/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/SequenceParsers.cpp [ 30% 198/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/SequenceWriters.cpp [ 31% 199/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/SVGParser.cpp [ 31% 200/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/PNGParser.cpp [ 31% 201/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/MultithreadedMolSupplier.cpp [ 31% 202/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.cpp [ 31% 203/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -MF Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o.d -o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FileParsers/MultithreadedSDMolSupplier.cpp [ 31% 204/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSubstructMatch_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -MF Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o.d -o Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Substruct/SubstructMatch.cpp [ 32% 205/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSubstructMatch_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -MF Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o.d -o Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Substruct/SubstructUtils.cpp [ 32% 206/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGenericGroups_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GENERICGROUPS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -MF Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o.d -o Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/GenericGroups/GenericGroups.cpp [ 32% 207/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitGenericGroups.so.1 -o lib/libRDKitGenericGroups.so.1.2023.09.6 Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 32% 208/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1 lib/libRDKitGenericGroups.so && : [ 32% 209/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o lib/libRDKitSubstructMatch.so.1.2023.09.6 Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 32% 210/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1 lib/libRDKitSubstructMatch.so && : [ 32% 211/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/Reaction.cpp [ 33% 212/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/MDLParser.cpp [ 33% 213/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/DaylightParser.cpp [ 33% 214/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/ReactionPickler.cpp [ 33% 215/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/ReactionWriter.cpp [ 33% 216/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/ReactionDepict.cpp [ 33% 217/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp [ 34% 218/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/ReactionUtils.cpp [ 34% 219/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/MoleculeParser.cpp [ 34% 220/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/ReactionRunner.cpp [ 34% 221/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/PreprocessRxn.cpp [ 34% 222/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/SanitizeRxn.cpp [ 34% 223/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PNGParser.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PNGParser.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PNGParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/PNGParser.cpp [ 35% 224/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/CDXMLParser.cpp [ 35% 225/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp [ 35% 226/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp [ 35% 227/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -MF Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o.d -o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp [ 35% 228/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdChemReactions_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -MF Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o.d -o Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp [ 35% 229/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdChemReactions_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -MF Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o.d -o Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp [ 35% 230/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -MF Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o.d -o Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemTransforms/ChemTransforms.cpp [ 36% 231/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -MF Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o.d -o Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ChemTransforms/MolFragmenter.cpp [ 36% 232/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_TAUTOMERQUERY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DTautomerQuery_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -MF Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o.d -o Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/TautomerQuery/TautomerQuery.cpp [ 36% 233/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdTautomerQuery_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -MF Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o.d -o Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/TautomerQuery/Wrap/rdTautomerQuery.cpp [ 36% 234/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSubgraphs_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -MF Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o.d -o Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Subgraphs/Subgraphs.cpp [ 36% 235/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSubgraphs_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -MF Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o.d -o Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Subgraphs/SubgraphUtils.cpp [ 36% 236/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o lib/libRDKitSubgraphs.so.1.2023.09.6 Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 37% 237/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1 lib/libRDKitSubgraphs.so && : [ 37% 238/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o -MF Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o.d -o Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FilterCatalog/Filters.cpp [ 37% 239/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -MF Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o.d -o Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FilterCatalog/FilterCatalog.cpp [ 37% 240/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -MF Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o.d -o Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp [ 37% 241/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -MF Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o.d -o Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FilterCatalog/FilterCatalogRunner.cpp [ 37% 242/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -MF Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o.d -o Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FilterCatalog/FilterMatchers.cpp [ 37% 243/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -MF Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o.d -o Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp [ 38% 244/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o lib/libRDKitFilterCatalog.so.1.2023.09.6 Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 38% 245/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1 lib/libRDKitFilterCatalog.so && : [ 38% 246/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfiltercatalog_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -MF Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o.d -o Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp [ 38% 247/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfiltercatalog_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -MF Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o.d -o Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp [ 38% 248/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdfiltercatalog.so Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 38% 249/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -MF Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o.d -o Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp [ 39% 250/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -MF Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o.d -o Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FragCatalog/FragCatGenerator.cpp [ 39% 251/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -MF Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o.d -o Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp [ 39% 252/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -MF Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o.d -o Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FragCatalog/FragCatParams.cpp [ 39% 253/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -MF Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o.d -o Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FragCatalog/FragFPGenerator.cpp [ 39% 254/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o lib/libRDKitFragCatalog.so.1.2023.09.6 Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 39% 255/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitFragCatalog.so.1.2023.09.6 lib/libRDKitFragCatalog.so.1 lib/libRDKitFragCatalog.so && : [ 40% 256/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfragcatalog_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -MF Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o.d -o Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp [ 40% 257/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfragcatalog_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -MF Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o.d -o Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp [ 40% 258/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfragcatalog_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -MF Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o.d -o Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp [ 40% 259/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfragcatalog_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -MF Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o.d -o Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp [ 40% 260/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfragcatalog_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -MF Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o.d -o Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp [ 40% 261/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/Crippen.cpp [ 40% 262/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/BCUT.cpp [ 41% 263/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/MolDescriptors.cpp [ 41% 264/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/MolSurf.cpp [ 41% 265/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/Lipinski.cpp [ 41% 266/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp [ 41% 267/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/MQN.cpp [ 41% 268/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/Property.cpp [ 42% 269/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/AUTOCORR2D.cpp [ 42% 270/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp [ 42% 271/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp [ 42% 272/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/USRDescriptor.cpp [ 42% 273/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AtomFeat.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AtomFeat.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AtomFeat.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/AtomFeat.cpp [ 42% 274/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/OxidationNumbers.cpp [ 42% 275/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/EEM.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/EEM.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/EEM.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/EEM.cpp [ 43% 276/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/PBF.cpp [ 43% 277/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/PMI.cpp [ 43% 278/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/AUTOCORR3D.cpp [ 43% 279/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/RDF.cpp [ 43% 280/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/MORSE.cpp [ 43% 281/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/GETAWAY.cpp [ 44% 282/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/WHIM.cpp [ 44% 283/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/CoulombMat.cpp.o -MF Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/CoulombMat.cpp.o.d -o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/CoulombMat.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/CoulombMat.cpp [ 44% 284/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolDescriptors_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -MF Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o.d -o Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp [ 44% 285/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -MF Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o.d -o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/Fingerprints.cpp [ 44% 286/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -MF Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o.d -o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/PatternFingerprints.cpp [ 44% 287/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -MF Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o.d -o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/MorganFingerprints.cpp [ 45% 288/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -MF Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o.d -o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/AtomPairs.cpp [ 45% 289/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o -MF Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o.d -o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/MACCS.cpp [ 45% 290/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o -MF Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o.d -o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/MHFP.cpp [ 45% 291/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -MF Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o.d -o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp [ 45% 292/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -MF Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o.d -o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp [ 45% 293/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -MF Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o.d -o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/MorganGenerator.cpp [ 45% 294/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -MF Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o.d -o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp [ 46% 295/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -MF Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o.d -o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/FingerprintUtil.cpp [ 46% 296/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -MF Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o.d -o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp [ 46% 297/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitFingerprints.so.1 -o lib/libRDKitFingerprints.so.1.2023.09.6 Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 46% 298/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitFingerprints.so.1 lib/libRDKitFingerprints.so && : [ 46% 299/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdFingerprintGenerator_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -MF Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o.d -o Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp [ 46% 300/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdFingerprintGenerator.so Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 47% 301/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMHFPFingerprint_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -MF Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o.d -o Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp [ 47% 302/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdMHFPFingerprint.so Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 47% 303/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -MF Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o.d -o Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/PartialCharges/GasteigerCharges.cpp [ 47% 304/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -MF Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o.d -o Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/PartialCharges/GasteigerParams.cpp [ 47% 305/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o lib/libRDKitPartialCharges.so.1.2023.09.6 Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 47% 306/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1 lib/libRDKitPartialCharges.so && : [ 47% 307/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdPartialCharges_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -MF Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o.d -o Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp [ 48% 308/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdPartialCharges.so Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 48% 309/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -MF Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o.d -o Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolTransforms/MolTransforms.cpp [ 48% 310/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o lib/libRDKitMolTransforms.so.1.2023.09.6 Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 48% 311/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1 lib/libRDKitMolTransforms.so && : [ 48% 312/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolTransforms_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -MF Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o.d -o Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp [ 48% 313/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdMolTransforms.so Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 49% 314/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -MF Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o.d -o Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp [ 49% 315/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -MF Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o.d -o Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp [ 49% 316/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -MF Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o.d -o Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp [ 49% 317/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -MF Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o.d -o Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp [ 49% 318/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -MF Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o.d -o Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp [ 49% 319/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -MF Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o.d -o Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp [ 50% 320/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdForceFieldHelpers_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -MF Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o.d -o Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp [ 50% 321/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -MF Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o.d -o Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp [ 50% 322/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -MF Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o.d -o Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/DistGeomHelpers/Embedder.cpp [ 50% 323/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -MF Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o.d -o Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/DistGeomHelpers/EmbedderUtils.cpp [ 50% 324/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PYTHON_MAX_ARITY=32 -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdDistGeom_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -MF Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o.d -o Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp [ 50% 325/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -MF Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o.d -o Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolAlign/AlignMolecules.cpp [ 50% 326/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitMolAlign.so.1 -o lib/libRDKitMolAlign.so.1.2023.09.6 Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 51% 327/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolAlign.so.1 lib/libRDKitMolAlign.so && : [ 51% 328/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdCoordGen.so External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/rdkit/work/.build/lib: /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 51% 329/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitDepictor.so.1 -o lib/libRDKitDepictor.so.1.2023.09.6 Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o -Wl,-rpath,/usr/local/lib:/wrkdirs/usr/ports/science/rdkit/work/.build/lib: /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 51% 330/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitDepictor.so.1.2023.09.6 lib/libRDKitDepictor.so.1 lib/libRDKitDepictor.so && : [ 51% 331/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdDepictor.so Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitDepictor.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 51% 332/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o lib/libRDKitChemTransforms.so.1.2023.09.6 Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 52% 333/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1 lib/libRDKitChemTransforms.so && : [ 52% 334/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitFileParsers.so.1 -o lib/libRDKitFileParsers.so.1.2023.09.6 Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeWriter.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitChemTransforms.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 52% 335/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitFileParsers.so.1 lib/libRDKitFileParsers.so && : [ 52% 336/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdfragcatalog.so Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitFragCatalog.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 /usr/local/lib/libmaeparser.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 52% 337/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitDescriptors.so.1 -o lib/libRDKitDescriptors.so.1.2023.09.6 Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AtomFeat.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/EEM.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/CoulombMat.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 52% 338/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitDescriptors.so.1 lib/libRDKitDescriptors.so && : [ 52% 339/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitChemReactions.so.1 -o lib/libRDKitChemReactions.so.1.2023.09.6 Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PNGParser.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 53% 340/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitChemReactions.so.1 lib/libRDKitChemReactions.so && : [ 53% 341/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitMarvinParser.so.1 -o lib/libRDKitMarvinParser.so.1.2023.09.6 Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinParser.cpp.o Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinWriter.cpp.o Code/GraphMol/MarvinParse/CMakeFiles/MarvinParser.dir/MarvinDefs.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 53% 342/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitMarvinParser.so.1.2023.09.6 lib/libRDKitMarvinParser.so.1 lib/libRDKitMarvinParser.so && : [ 53% 343/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdChemReactions.so Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMarvinParser.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 53% 344/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdMolDescriptors.so Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 53% 345/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DO3AAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -MF Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o.d -o Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp [ 54% 346/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolAlign_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -MF Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o.d -o Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp [ 54% 347/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -MF Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o.d -o Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp [ 54% 348/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -MF Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o.d -o Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp [ 54% 349/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -MF Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o.d -o Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp [ 54% 350/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -MF Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o.d -o Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp [ 54% 351/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o lib/libRDKitMolChemicalFeatures.so.1.2023.09.6 Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 55% 352/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitMolChemicalFeatures.so.1.2023.09.6 lib/libRDKitMolChemicalFeatures.so.1 lib/libRDKitMolChemicalFeatures.so && : [ 55% 353/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolChemicalFeatures_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -MF Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o.d -o Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp [ 55% 354/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolChemicalFeatures_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -MF Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o.d -o Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp [ 55% 355/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolChemicalFeatures_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -MF Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o.d -o Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp [ 55% 356/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolChemicalFeatures_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -MF Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o.d -o Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp [ 55% 357/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdMolChemicalFeatures.so Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolChemicalFeatures.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 55% 358/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DShapeHelpers_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -MF Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o.d -o Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp [ 56% 359/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DShapeHelpers_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -MF Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o.d -o Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp [ 56% 360/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o lib/libRDKitShapeHelpers.so.1.2023.09.6 Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 56% 361/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitShapeHelpers.so.1.2023.09.6 lib/libRDKitShapeHelpers.so.1 lib/libRDKitShapeHelpers.so && : [ 56% 362/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdShapeHelpers_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -MF Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o.d -o Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp [ 56% 363/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdShapeHelpers.so Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitShapeHelpers.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 56% 364/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -MF Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o.d -o Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp [ 57% 365/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -MF Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o.d -o Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolCatalog/MolCatalogParams.cpp [ 57% 366/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o lib/libRDKitMolCatalog.so.1.2023.09.6 Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 57% 367/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitMolCatalog.so.1.2023.09.6 lib/libRDKitMolCatalog.so.1 lib/libRDKitMolCatalog.so && : [ 57% 368/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolCatalog_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -MF Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o.d -o Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp [ 57% 369/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdMolCatalog.so Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolCatalog.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 57% 370/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/MolDraw2D.cpp [ 57% 371/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp [ 58% 372/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp [ 58% 373/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp [ 58% 374/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/AtomSymbol.cpp [ 58% 375/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawAnnotation.cpp [ 58% 376/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawMol.cpp [ 58% 377/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp [ 59% 378/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawMolMCHCircleAndLine.cpp [ 59% 379/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawMolMCHLasso.cpp [ 59% 380/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawShape.cpp [ 59% 381/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawText.cpp [ 59% 382/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawTextNotFT.cpp [ 59% 383/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawTextSVG.cpp [ 60% 384/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/MolDraw2DJS.cpp [ 60% 385/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawTextJS.cpp [ 60% 386/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawTextFT.cpp [ 60% 387/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawTextFTSVG.cpp [ 60% 388/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o -MF Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o.d -o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/DrawTextFTJS.cpp [ 60% 389/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o lib/libRDKitMolDraw2D.so.1.2023.09.6 Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHCircleAndLine.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCHLasso.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitChemReactions.so.1.2023.09.6 /usr/local/lib/libfreetype.so lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 60% 390/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitMolDraw2D.so.1.2023.09.6 lib/libRDKitMolDraw2D.so.1 lib/libRDKitMolDraw2D.so && : [ 61% 391/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolDraw2D_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -MF Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o.d -o Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp [ 61% 392/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/Draw/rdMolDraw2D.so Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolDraw2D.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 /usr/local/lib/libfreetype.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 61% 393/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o -MF Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o.d -o Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FMCS/FMCS.cpp [ 61% 394/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o -MF Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o.d -o Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FMCS/Seed.cpp [ 61% 395/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -MF Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o.d -o Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp [ 61% 396/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -MF Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o.d -o Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FMCS/SubstructMatchCustom.cpp [ 62% 397/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitFMCS.so.1 -o lib/libRDKitFMCS.so.1.2023.09.6 Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl /usr/local/lib/libmaeparser.so && : [ 62% 398/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitFMCS.so.1.2023.09.6 lib/libRDKitFMCS.so.1 lib/libRDKitFMCS.so && : [ 62% 399/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdFMCS_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -MF Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o.d -o Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp [ 62% 400/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdFMCS.so Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitFMCS.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 62% 401/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o -MF Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o.d -o Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolHash/hashfunctions.cpp [ 62% 402/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o -MF Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o.d -o Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolHash/normalize.cpp [ 62% 403/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitMolHash.so.1 -o lib/libRDKitMolHash.so.1.2023.09.6 Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 63% 404/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitMolHash.so.1.2023.09.6 lib/libRDKitMolHash.so.1 lib/libRDKitMolHash.so && : [ 63% 405/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolHash_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -MF Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o.d -o Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp [ 63% 406/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdMolHash.so Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolHash.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 63% 407/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o -MF Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o.d -o Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MMPA/MMPA.cpp [ 63% 408/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitMMPA.so.1 -o lib/libRDKitMMPA.so.1.2023.09.6 Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl /usr/local/lib/libmaeparser.so && : [ 63% 409/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitMMPA.so.1.2023.09.6 lib/libRDKitMMPA.so.1 lib/libRDKitMMPA.so && : [ 64% 410/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMMPA_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -MF Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o.d -o Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp [ 64% 411/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdMMPA.so Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMMPA.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 64% 412/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRascalMCES_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o -MF Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o.d -o Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RascalMCES/RascalMCES.cpp [ 64% 413/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRascalMCES_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o -MF Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o.d -o Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RascalMCES/RascalCluster.cpp [ 64% 414/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRascalMCES_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o -MF Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o.d -o Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RascalMCES/RascalButinaCluster.cpp [ 64% 415/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRascalMCES_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o -MF Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o.d -o Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RascalMCES/lap_a_la_scipy.cpp [ 65% 416/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRascalMCES_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o -MF Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o.d -o Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RascalMCES/PartitionSet.cpp [ 65% 417/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RASCALMCES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRascalMCES_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalResult.cpp.o -MF Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalResult.cpp.o.d -o Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalResult.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RascalMCES/RascalResult.cpp [ 65% 418/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitRascalMCES.so.1 -o lib/libRDKitRascalMCES.so.1.2023.09.6 Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalMCES.cpp.o Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalCluster.cpp.o Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalButinaCluster.cpp.o Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/lap_a_la_scipy.cpp.o Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/PartitionSet.cpp.o Code/GraphMol/RascalMCES/CMakeFiles/RascalMCES.dir/RascalResult.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl /usr/local/lib/libmaeparser.so && : [ 65% 419/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitRascalMCES.so.1.2023.09.6 lib/libRDKitRascalMCES.so.1 lib/libRDKitRascalMCES.so && : [ 65% 420/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdRascalMCES_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o -MF Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o.d -o Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RascalMCES/Wrap/rdRascalMCES.cpp [ 65% 421/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdRascalMCES.so Code/GraphMol/RascalMCES/Wrap/CMakeFiles/rdRascalMCES.dir/rdRascalMCES.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitRascalMCES.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 65% 422/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/CIPMol.cpp [ 66% 423/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/CIPLabeler.cpp [ 66% 424/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/Mancude.cpp [ 66% 425/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/Digraph.cpp [ 66% 426/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/Node.cpp [ 66% 427/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/Edge.cpp [ 66% 428/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/Sort.cpp [ 67% 429/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/configs/Configuration.cpp [ 67% 430/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/configs/Sp2Bond.cpp [ 67% 431/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/configs/Tetrahedral.cpp [ 67% 432/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp [ 67% 433/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp [ 67% 434/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/rules/Rule2.cpp [ 67% 435/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/rules/Rule3.cpp [ 68% 436/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp [ 68% 437/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp [ 68% 438/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/rules/Rule4c.cpp [ 68% 439/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/rules/Rule5.cpp [ 68% 440/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/rules/Rule5New.cpp [ 68% 441/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/rules/Rule6.cpp [ 69% 442/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -MF Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o.d -o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/rules/SequenceRule.cpp [ 69% 443/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitCIPLabeler.so.1 -o lib/libRDKitCIPLabeler.so.1.2023.09.6 Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 69% 444/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitCIPLabeler.so.1.2023.09.6 lib/libRDKitCIPLabeler.so.1 lib/libRDKitCIPLabeler.so && : [ 69% 445/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdCIPLabeler_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -MF Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o.d -o Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/CIPLabeler/Wrap/rdCIPLabeler.cpp [ 69% 446/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdCIPLabeler.so Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitCIPLabeler.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 69% 447/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DDeprotect_EXPORTS -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o -MF Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o.d -o Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Deprotect/Deprotect.cpp [ 70% 448/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitDeprotect.so.1 -o lib/libRDKitDeprotect.so.1.2023.09.6 Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 70% 449/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitDeprotect.so.1.2023.09.6 lib/libRDKitDeprotect.so.1 lib/libRDKitDeprotect.so && : [ 70% 450/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdDeprotect_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o -MF Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o.d -o Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Deprotect/Wrap/rdDeprotect.cpp [ 70% 451/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdDeprotect_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o -MF Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o.d -o Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Deprotect/Wrap/DeprotectWrap.cpp [ 70% 452/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdDeprotect.so Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitDeprotect.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 70% 453/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DReducedGraphs_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -MF Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o.d -o Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp [ 70% 454/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o lib/libRDKitReducedGraphs.so.1.2023.09.6 Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 71% 455/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitReducedGraphs.so.1.2023.09.6 lib/libRDKitReducedGraphs.so.1 lib/libRDKitReducedGraphs.so && : [ 71% 456/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdReducedGraphs_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -MF Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o.d -o Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp [ 71% 457/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdReducedGraphs.so Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitReducedGraphs.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 71% 458/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DTrajectory_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o -MF Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o.d -o Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Trajectory/Trajectory.cpp [ 71% 459/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitTrajectory.so.1 -o lib/libRDKitTrajectory.so.1.2023.09.6 Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 71% 460/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitTrajectory.so.1 lib/libRDKitTrajectory.so && : [ 72% 461/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitOptimizer.so.1 -o lib/libRDKitOptimizer.so.1.2023.09.6 Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 72% 462/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitOptimizer.so.1.2023.09.6 lib/libRDKitOptimizer.so.1 lib/libRDKitOptimizer.so && : [ 72% 463/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitForceField.so.1 -o lib/libRDKitForceField.so.1.2023.09.6 Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitOptimizer.so.1.2023.09.6 lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 72% 464/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitForceField.so.1.2023.09.6 lib/libRDKitForceField.so.1 lib/libRDKitForceField.so && : [ 72% 465/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o lib/libRDKitForceFieldHelpers.so.1.2023.09.6 Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitForceField.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitOptimizer.so.1.2023.09.6 lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 72% 466/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitForceFieldHelpers.so.1.2023.09.6 lib/libRDKitForceFieldHelpers.so.1 lib/libRDKitForceFieldHelpers.so && : [ 72% 467/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/ForceField/rdForceField.so Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitForceFieldHelpers.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitForceField.so.1.2023.09.6 lib/libRDKitOptimizer.so.1.2023.09.6 lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 73% 468/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o lib/libRDKitDistGeometry.so.1.2023.09.6 Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitForceFieldHelpers.so.1.2023.09.6 lib/libRDKitForceField.so.1.2023.09.6 lib/libRDKitOptimizer.so.1.2023.09.6 lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 73% 469/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitDistGeometry.so.1.2023.09.6 lib/libRDKitDistGeometry.so.1 lib/libRDKitDistGeometry.so && : [ 73% 470/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/DistanceGeometry/DistGeom.so Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitDistGeometry.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitForceFieldHelpers.so.1.2023.09.6 lib/libRDKitForceField.so.1.2023.09.6 lib/libRDKitOptimizer.so.1.2023.09.6 lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 73% 471/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdForceFieldHelpers.so Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitForceFieldHelpers.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitForceField.so.1.2023.09.6 lib/libRDKitOptimizer.so.1.2023.09.6 lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 73% 472/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o lib/libRDKitDistGeomHelpers.so.1.2023.09.6 Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitDistGeometry.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitForceFieldHelpers.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitForceField.so.1.2023.09.6 lib/libRDKitOptimizer.so.1.2023.09.6 lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 73% 473/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitDistGeomHelpers.so.1.2023.09.6 lib/libRDKitDistGeomHelpers.so.1 lib/libRDKitDistGeomHelpers.so && : [ 74% 474/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdDistGeom.so Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitDistGeomHelpers.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitDistGeometry.so.1.2023.09.6 lib/libRDKitForceFieldHelpers.so.1.2023.09.6 lib/libRDKitForceField.so.1.2023.09.6 lib/libRDKitOptimizer.so.1.2023.09.6 lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 74% 475/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitO3AAlign.so.1 -o lib/libRDKitO3AAlign.so.1.2023.09.6 Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitForceFieldHelpers.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitForceField.so.1.2023.09.6 lib/libRDKitOptimizer.so.1.2023.09.6 lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 74% 476/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitO3AAlign.so.1.2023.09.6 lib/libRDKitO3AAlign.so.1 lib/libRDKitO3AAlign.so && : [ 74% 477/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdMolAlign.so Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitO3AAlign.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitForceFieldHelpers.so.1.2023.09.6 lib/libRDKitForceField.so.1.2023.09.6 lib/libRDKitOptimizer.so.1.2023.09.6 lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 74% 478/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSubstructLibrary_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -MF Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o.d -o Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp [ 74% 479/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSubstructLibrary_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -MF Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o.d -o Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SubstructLibrary/PatternFactory.cpp [ 75% 480/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSubstructLibrary_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -MF Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o.d -o Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp [ 75% 481/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSubstructLibrary_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -MF Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o.d -o Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp [ 75% 482/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -MF Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o.d -o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp [ 75% 483/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o -MF Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o.d -o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RGroupDecomposition/RGroupDecompData.cpp [ 75% 484/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o -MF Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o.d -o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RGroupDecomposition/RGroupData.cpp [ 75% 485/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o -MF Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o.d -o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RGroupDecomposition/RGroupUtils.cpp [ 75% 486/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o -MF Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o.d -o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RGroupDecomposition/RGroupCore.cpp [ 76% 487/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o -MF Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o.d -o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RGroupDecomposition/RGroupDecompParams.cpp [ 76% 488/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o -MF Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o.d -o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RGroupDecomposition/RGroupScore.cpp [ 76% 489/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o -MF Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o.d -o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RGroupDecomposition/RGroupFingerprintScore.cpp [ 76% 490/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -MF Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o.d -o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RGroupDecomposition/RGroupGa.cpp [ 76% 491/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdRGroupDecomposition_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -MF Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o.d -o Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp [ 76% 492/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/rapidjson-1.1.0/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o -MF Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o.d -o Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolInterchange/Parser.cpp [ 77% 493/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/rapidjson-1.1.0/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o -MF Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o.d -o Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolInterchange/Writer.cpp [ 77% 494/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitMolInterchange.so.1 -o lib/libRDKitMolInterchange.so.1.2023.09.6 Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 77% 495/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitMolInterchange.so.1.2023.09.6 lib/libRDKitMolInterchange.so.1 lib/libRDKitMolInterchange.so && : [ 77% 496/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolInterchange_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/rapidjson-1.1.0/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -MF Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o.d -o Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolInterchange/Wrap/rdMolInterchange.cpp [ 77% 497/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdMolInterchange.so Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolInterchange.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 77% 498/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSLNParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o -MF Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o.d -o Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SLNParse/SLNParse.cpp [ 77% 499/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSLNParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -MF Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o.d -o Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SLNParse/SLNAttribs.cpp [ 78% 500/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSLNParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o -MF Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o.d -o Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SLNParse/sln.tab.cpp [ 78% 501/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSLNParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -MF Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o.d -o Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SLNParse/lex.yysln.cpp [ 78% 502/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitSLNParse.so.1 -o lib/libRDKitSLNParse.so.1.2023.09.6 Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 78% 503/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitSLNParse.so.1.2023.09.6 lib/libRDKitSLNParse.so.1 lib/libRDKitSLNParse.so && : [ 78% 504/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSLNParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -MF Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o.d -o Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp [ 78% 505/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdSLNParse.so Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitSLNParse.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 79% 506/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/rdchem.cpp [ 79% 507/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/Table.cpp [ 79% 508/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/Atom.cpp [ 79% 509/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/Bond.cpp [ 79% 510/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/Mol.cpp [ 79% 511/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/Conformer.cpp [ 80% 512/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/RingInfo.cpp [ 80% 513/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/EditableMol.cpp [ 80% 514/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/MonomerInfo.cpp [ 80% 515/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp [ 80% 516/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/MolBundle.cpp [ 80% 517/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/StereoGroup.cpp [ 80% 518/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/SubstanceGroup.cpp [ 81% 519/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/Chirality.cpp [ 81% 520/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdchem.so Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMarvinParser.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libmaeparser.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 81% 521/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolops_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/rdmolops.cpp [ 81% 522/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolops_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/MolOps.cpp [ 81% 523/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolops_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/ChiralityOps.cpp [ 81% 524/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdmolops.so Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 82% 525/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdqueries_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/rdqueries.cpp [ 82% 526/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdqueries_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/Queries.cpp [ 82% 527/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdqueries.so Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 82% 528/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/rdmolfiles.cpp [ 82% 529/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp [ 82% 530/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/MaeMolSupplier.cpp [ 82% 531/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/MaeWriter.cpp [ 83% 532/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/SDMolSupplier.cpp [ 83% 533/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/TDTMolSupplier.cpp [ 83% 534/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/SmilesMolSupplier.cpp [ 83% 535/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/SmilesWriter.cpp [ 83% 536/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/SDWriter.cpp [ 83% 537/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/TDTWriter.cpp [ 84% 538/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/PDBWriter.cpp [ 84% 539/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/MultithreadedSmilesMolSupplier.cpp [ 84% 540/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/MultithreadedSDMolSupplier.cpp [ 84% 541/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdmolfiles.so Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMarvinParser.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 84% 542/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdtrajectory_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/Trajectory.cpp [ 84% 543/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdtrajectory_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -MF Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o.d -o Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Wrap/rdTrajectory.cpp [ 85% 544/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdtrajectory.so Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitTrajectory.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 85% 545/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/MolStandardize.cpp [ 85% 546/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Metal.cpp [ 85% 547/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Normalize.cpp [ 85% 548/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Validate.cpp [ 85% 549/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Charge.cpp [ 85% 550/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Tautomer.cpp [ 86% 551/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Fragment.cpp [ 86% 552/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.cpp [ 86% 553/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.cpp [ 86% 554/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.cpp [ 86% 555/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp [ 86% 556/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.cpp [ 87% 557/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.cpp [ 87% 558/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp [ 87% 559/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.cpp [ 87% 560/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.cpp [ 87% 561/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.cpp [ 87% 562/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.cpp [ 87% 563/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -MF Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o.d -o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp [ 88% 564/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitMolStandardize.so.1 -o lib/libRDKitMolStandardize.so.1.2023.09.6 Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl /usr/local/lib/libmaeparser.so && : [ 88% 565/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitMolStandardize.so.1.2023.09.6 lib/libRDKitMolStandardize.so.1 lib/libRDKitMolStandardize.so && : [ 88% 566/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitTautomerQuery.so.1 -o lib/libRDKitTautomerQuery.so.1.2023.09.6 Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolStandardize.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 88% 567/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitTautomerQuery.so.1.2023.09.6 lib/libRDKitTautomerQuery.so.1 lib/libRDKitTautomerQuery.so && : [ 88% 568/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdTautomerQuery.so Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitTautomerQuery.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitMolStandardize.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 88% 569/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o -MF Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o.d -o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Wrap/rdMolStandardize.cpp [ 89% 570/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -MF Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o.d -o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Wrap/Validate.cpp [ 89% 571/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -MF Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o.d -o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Wrap/Charge.cpp [ 89% 572/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -MF Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o.d -o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp [ 89% 573/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -MF Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o.d -o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp [ 89% 574/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -MF Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o.d -o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Wrap/Metal.cpp [ 89% 575/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -MF Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o.d -o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp [ 90% 576/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/MolStandardize/rdMolStandardize.so Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolStandardize.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 90% 577/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SCAFFOLDNETWORK_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DScaffoldNetwork_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -MF Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o.d -o Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ScaffoldNetwork/ScaffoldNetwork.cpp [ 90% 578/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitScaffoldNetwork.so.1 -o lib/libRDKitScaffoldNetwork.so.1.2023.09.6 Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolStandardize.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 90% 579/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitScaffoldNetwork.so.1.2023.09.6 lib/libRDKitScaffoldNetwork.so.1 lib/libRDKitScaffoldNetwork.so && : [ 90% 580/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdScaffoldNetwork_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -MF Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o.d -o Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/ScaffoldNetwork/Wrap/rdScaffoldNetwork.cpp [ 90% 581/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/Scaffolds/rdScaffoldNetwork.so Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitScaffoldNetwork.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitMolStandardize.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 90% 582/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o -MF Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o.d -o Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolEnumerator/MolEnumerator.cpp [ 91% 583/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o -MF Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o.d -o Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolEnumerator/PositionVariation.cpp [ 91% 584/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o -MF Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o.d -o Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolEnumerator/LinkNode.cpp [ 91% 585/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -MF Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o.d -o Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolEnumerator/RepeatUnit.cpp [ 91% 586/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitMolEnumerator.so.1 -o lib/libRDKitMolEnumerator.so.1.2023.09.6 Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 91% 587/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitMolEnumerator.so.1.2023.09.6 lib/libRDKitMolEnumerator.so.1 lib/libRDKitMolEnumerator.so && : [ 91% 588/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o lib/libRDKitRGroupDecomposition.so.1.2023.09.6 Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitFMCS.so.1.2023.09.6 lib/libRDKitga.so.1.2023.09.6 lib/libRDKitMolEnumerator.so.1.2023.09.6 lib/libRDKitTautomerQuery.so.1.2023.09.6 lib/libRDKitMolStandardize.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 92% 589/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitRGroupDecomposition.so.1.2023.09.6 lib/libRDKitRGroupDecomposition.so.1 lib/libRDKitRGroupDecomposition.so && : [ 92% 590/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdRGroupDecomposition.so Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitRGroupDecomposition.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitFMCS.so.1.2023.09.6 lib/libRDKitga.so.1.2023.09.6 lib/libRDKitMolEnumerator.so.1.2023.09.6 lib/libRDKitTautomerQuery.so.1.2023.09.6 lib/libRDKitMolStandardize.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 92% 591/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolEnumerator_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -MF Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o.d -o Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/MolEnumerator/Wrap/rdMolEnumerator.cpp [ 92% 592/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdMolEnumerator.so Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolEnumerator.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 92% 593/640] /ccache/libexec/ccache/c++ -DAbbreviations_EXPORTS -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_ABBREVIATIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o -MF Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o.d -o Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Abbreviations/Abbreviations.cpp [ 92% 594/640] /ccache/libexec/ccache/c++ -DAbbreviations_EXPORTS -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_ABBREVIATIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -MF Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o.d -o Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Abbreviations/AbbreviationsUtils.cpp [ 92% 595/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitAbbreviations.so.1 -o lib/libRDKitAbbreviations.so.1.2023.09.6 Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 93% 596/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitAbbreviations.so.1.2023.09.6 lib/libRDKitAbbreviations.so.1 lib/libRDKitAbbreviations.so && : [ 93% 597/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdAbbreviations_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -MF Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o.d -o Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/Abbreviations/Wrap/rdAbbreviations.cpp [ 93% 598/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdAbbreviations.so Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitAbbreviations.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 93% 599/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGeneralizedSubstruct_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GENERALIZEDSUBSTRUCT_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o -MF Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o.d -o Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/GeneralizedSubstruct/XQMol.cpp [ 93% 600/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DGeneralizedSubstruct_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GENERALIZEDSUBSTRUCT_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o -MF Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o.d -o Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/GeneralizedSubstruct/TextIO.cpp [ 93% 601/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitGeneralizedSubstruct.so.1 -o lib/libRDKitGeneralizedSubstruct.so.1.2023.09.6 Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/XQMol.cpp.o Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitMolEnumerator.so.1.2023.09.6 lib/libRDKitTautomerQuery.so.1.2023.09.6 lib/libRDKitMolStandardize.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 94% 602/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitGeneralizedSubstruct.so.1.2023.09.6 lib/libRDKitGeneralizedSubstruct.so.1 lib/libRDKitGeneralizedSubstruct.so && : [ 94% 603/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o lib/libRDKitSubstructLibrary.so.1.2023.09.6 Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGeneralizedSubstruct.so.1.2023.09.6 lib/libRDKitTautomerQuery.so.1.2023.09.6 lib/libRDKitMolStandardize.so.1.2023.09.6 lib/libRDKitMolEnumerator.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl /usr/local/lib/libmaeparser.so && : [ 94% 604/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitSubstructLibrary.so.1.2023.09.6 lib/libRDKitSubstructLibrary.so.1 lib/libRDKitSubstructLibrary.so && : [ 94% 605/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdSubstructLibrary.so Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitSubstructLibrary.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitGeneralizedSubstruct.so.1.2023.09.6 lib/libRDKitMolEnumerator.so.1.2023.09.6 lib/libRDKitTautomerQuery.so.1.2023.09.6 lib/libRDKitMolStandardize.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 94% 606/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdGeneralizedSubstruct_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o -MF Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o.d -o Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/GraphMol/GeneralizedSubstruct/Wrap/rdGeneralizedSubstruct.cpp [ 94% 607/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdGeneralizedSubstruct.so Code/GraphMol/GeneralizedSubstruct/Wrap/CMakeFiles/rdGeneralizedSubstruct.dir/rdGeneralizedSubstruct.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitGeneralizedSubstruct.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitMolEnumerator.so.1.2023.09.6 lib/libRDKitTautomerQuery.so.1.2023.09.6 lib/libRDKitMolStandardize.so.1.2023.09.6 lib/libRDKitChemReactions.so.1.2023.09.6 lib/libRDKitFilterCatalog.so.1.2023.09.6 lib/libRDKitCatalogs.so.1.2023.09.6 lib/libRDKitDescriptors.so.1.2023.09.6 lib/libRDKitFileParsers.so.1.2023.09.6 lib/libRDKitChemTransforms.so.1.2023.09.6 lib/libRDKitDepictor.so.1.2023.09.6 /usr/local/lib/libcoordgen.so lib/libRDKitMolAlign.so.1.2023.09.6 lib/libRDKitAlignment.so.1.2023.09.6 /usr/local/lib/libmaeparser.so lib/libRDKitMolTransforms.so.1.2023.09.6 lib/libRDKitPartialCharges.so.1.2023.09.6 lib/libRDKitEigenSolvers.so.1.2023.09.6 lib/libRDKitFingerprints.so.1.2023.09.6 lib/libRDKitSubstructMatch.so.1.2023.09.6 lib/libRDKitGenericGroups.so.1.2023.09.6 lib/libRDKitSmilesParse.so.1.2023.09.6 lib/libRDKitSubgraphs.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 95% 608/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMetricMatrixCalc_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -MF Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o.d -o Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp [ 95% 609/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/DataManip/Metric/rdMetricMatrixCalc.so Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 95% 610/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSimDivPickers_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -MF Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o.d -o Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/SimDivPickers/DistPicker.cpp [ 95% 611/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSimDivPickers_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -MF Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o.d -o Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/SimDivPickers/MaxMinPicker.cpp [ 95% 612/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSimDivPickers_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -MF Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o.d -o Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/SimDivPickers/HierarchicalClusterPicker.cpp [ 95% 613/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSimDivPickers_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -MF Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o.d -o Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/SimDivPickers/Wrap/MaxMinPicker.cpp [ 95% 614/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSimDivPickers_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o -MF Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o.d -o Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/SimDivPickers/Wrap/LeaderPicker.cpp [ 96% 615/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSimDivPickers_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -MF Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o.d -o Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp [ 96% 616/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSimDivPickers_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -MF Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o.d -o Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp [ 96% 617/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dhc_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o -MF Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o.d -o Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ML/Cluster/Murtagh/hc.c [ 96% 618/640] /ccache/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dhc_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -MF Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o.d -o Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ML/Cluster/Murtagh/hcdriver.c [ 96% 619/640] : && /ccache/libexec/ccache/cc -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKithc.so.1 -o lib/libRDKithc.so.1.2023.09.6 Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -Wl,-rpath,/usr/local/lib: -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 96% 620/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKithc.so.1.2023.09.6 lib/libRDKithc.so.1 lib/libRDKithc.so && : [ 97% 621/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o lib/libRDKitSimDivPickers.so.1.2023.09.6 Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKithc.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 97% 622/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitSimDivPickers.so.1.2023.09.6 lib/libRDKitSimDivPickers.so.1 lib/libRDKitSimDivPickers.so && : [ 97% 623/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/SimDivFilters/rdSimDivPickers.so Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitSimDivPickers.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKithc.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 97% 624/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o -MF Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o.d -o Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ML/Cluster/Murtagh/Clustering.cpp [ 97% 625/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/ML/Cluster/Clustering.so Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKithc.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 97% 626/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -MF Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o.d -o Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ML/InfoTheory/InfoBitRanker.cpp [ 97% 627/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o lib/libRDKitInfoTheory.so.1.2023.09.6 Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 98% 628/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitInfoTheory.so.1.2023.09.6 lib/libRDKitInfoTheory.so.1 lib/libRDKitInfoTheory.so && : [ 98% 629/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdInfoTheory_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -MF Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o.d -o Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp [ 98% 630/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdInfoTheory_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -MF Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o.d -o Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp [ 98% 631/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdInfoTheory_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -MF Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o.d -o Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp [ 98% 632/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/ML/InfoTheory/rdInfoTheory.so Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitInfoTheory.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 98% 633/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcQuantize_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o -MF Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o.d -o Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ML/Data/cQuantize.cpp [ 99% 634/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/ML/Data/cQuantize.so Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitInfoTheory.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so && : [ 99% 635/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ChemicalFeatures/FreeChemicalFeature.cpp [ 99% 636/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o lib/libRDKitChemicalFeatures.so.1.2023.09.6 Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : [ 99% 637/640] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitChemicalFeatures.so.1.2023.09.6 lib/libRDKitChemicalFeatures.so.1 lib/libRDKitChemicalFeatures.so && : [ 99% 638/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdChemicalFeatures_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -MF Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o.d -o Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp [ 99% 639/640] /ccache/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdChemicalFeatures_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp [100% 640/640] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -fstack-protector-strong -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -shared -o rdkit/Chem/rdChemicalFeatures.so Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitChemicalFeatures.so.1.2023.09.6 lib/libRDKitGraphMol.so.1.2023.09.6 lib/libRDKitRDBoost.so.1.2023.09.6 lib/libRDKitRDGeometryLib.so.1.2023.09.6 lib/libRDKitDataStructs.so.1.2023.09.6 lib/libRDKitRingDecomposerLib.so.1.2023.09.6 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so lib/libRDKitRDGeneral.so.1.2023.09.6 /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_serialization.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so -lpthread -ldl && : =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> rdkit-2023.09.6 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> rdkit-2023.09.6 depends on package: py39-pillow>=7.0.0 - not found ===> Installing existing package /packages/All/py39-pillow-10.2.0.pkg [pkg-builder.dan.net.uk] Installing py39-pillow-10.2.0... [pkg-builder.dan.net.uk] `-- Installing jpeg-turbo-3.0.2... [pkg-builder.dan.net.uk] `-- Extracting jpeg-turbo-3.0.2: .......... done [pkg-builder.dan.net.uk] `-- Installing lcms2-2.16_1... [pkg-builder.dan.net.uk] | `-- Installing tiff-4.4.0_3... [pkg-builder.dan.net.uk] | | `-- Installing jbigkit-2.1_2... [pkg-builder.dan.net.uk] | | `-- Extracting jbigkit-2.1_2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libdeflate-1.19... [pkg-builder.dan.net.uk] | | `-- Extracting libdeflate-1.19: .......... done [pkg-builder.dan.net.uk] | `-- Extracting tiff-4.4.0_3: .......... done [pkg-builder.dan.net.uk] `-- Extracting lcms2-2.16_1: .......... done [pkg-builder.dan.net.uk] `-- Installing libimagequant-4.3.0_1... [pkg-builder.dan.net.uk] `-- Extracting libimagequant-4.3.0_1: ...... done [pkg-builder.dan.net.uk] `-- Installing libraqm-0.10.1... [pkg-builder.dan.net.uk] | `-- Installing fribidi-1.0.13_1... [pkg-builder.dan.net.uk] | `-- Extracting fribidi-1.0.13_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing harfbuzz-8.3.0... [pkg-builder.dan.net.uk] | | `-- Installing glib-2.80.0,2... [pkg-builder.dan.net.uk] | | `-- Installing libiconv-1.17_1... [pkg-builder.dan.net.uk] | | `-- Extracting libiconv-1.17_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing pcre2-10.43... [pkg-builder.dan.net.uk] | | `-- Extracting pcre2-10.43: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-packaging-23.2... [pkg-builder.dan.net.uk] | | `-- Extracting py39-packaging-23.2: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting glib-2.80.0,2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing graphite2-1.3.14... [pkg-builder.dan.net.uk] | | `-- Extracting graphite2-1.3.14: .......... done [pkg-builder.dan.net.uk] | `-- Extracting harfbuzz-8.3.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting libraqm-0.10.1: .......... done [pkg-builder.dan.net.uk] `-- Installing libxcb-1.16.1... [pkg-builder.dan.net.uk] | `-- Installing libXau-1.0.9_1... [pkg-builder.dan.net.uk] | `-- Extracting libXau-1.0.9_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libXdmcp-1.1.5... [pkg-builder.dan.net.uk] | | `-- Installing xorgproto-2023.2... [pkg-builder.dan.net.uk] | | `-- Extracting xorgproto-2023.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libXdmcp-1.1.5: ...... done [pkg-builder.dan.net.uk] `-- Extracting libxcb-1.16.1: .......... done [pkg-builder.dan.net.uk] `-- Installing openjpeg-2.5.2... [pkg-builder.dan.net.uk] | `-- Installing png-1.6.43... [pkg-builder.dan.net.uk] | `-- Extracting png-1.6.43: .......... done [pkg-builder.dan.net.uk] `-- Extracting openjpeg-2.5.2: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-olefile-0.46... [pkg-builder.dan.net.uk] `-- Extracting py39-olefile-0.46: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-tkinter-3.9.18_7... [pkg-builder.dan.net.uk] | `-- Installing tcl86-8.6.14_1... [pkg-builder.dan.net.uk] | `-- Extracting tcl86-8.6.14_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing tk86-8.6.14_1... [pkg-builder.dan.net.uk] | | `-- Installing fontconfig-2.15.0_2,1... [pkg-builder.dan.net.uk] | | `-- Extracting fontconfig-2.15.0_2,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libX11-1.8.7_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting libX11-1.8.7_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXScrnSaver-1.2.4_1... [pkg-builder.dan.net.uk] | | `-- Installing libXext-1.3.6,1... [pkg-builder.dan.net.uk] | | `-- Extracting libXext-1.3.6,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libXScrnSaver-1.2.4_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXft-2.3.7_1... [pkg-builder.dan.net.uk] | | `-- Installing libXrender-0.9.10_2... [pkg-builder.dan.net.uk] | | `-- Extracting libXrender-0.9.10_2: ....... done [pkg-builder.dan.net.uk] | | `-- Extracting libXft-2.3.7_1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting tk86-8.6.14_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-tkinter-3.9.18_7: ..... done [pkg-builder.dan.net.uk] `-- Installing webp-1.3.2_1... [pkg-builder.dan.net.uk] | `-- Installing freeglut-3.2.1... [pkg-builder.dan.net.uk] | | `-- Installing libGLU-9.0.2_2... [pkg-builder.dan.net.uk] | | `-- Installing libglvnd-1.7.0... [pkg-builder.dan.net.uk] | | `-- Extracting libglvnd-1.7.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libGLU-9.0.2_2: ..... done [pkg-builder.dan.net.uk] | | `-- Installing libICE-1.1.0_2,1... [pkg-builder.dan.net.uk] | | `-- Extracting libICE-1.1.0_2,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXi-1.8_1,1... [pkg-builder.dan.net.uk] | | `-- Installing libXfixes-6.0.0_1... [pkg-builder.dan.net.uk] | | `-- Extracting libXfixes-6.0.0_1: ....... done [pkg-builder.dan.net.uk] | | `-- Extracting libXi-1.8_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXrandr-1.5.2_1... [pkg-builder.dan.net.uk] | | `-- Extracting libXrandr-1.5.2_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXxf86vm-1.1.4_4... [pkg-builder.dan.net.uk] | | `-- Extracting libXxf86vm-1.1.4_4: .......... done [pkg-builder.dan.net.uk] | `-- Extracting freeglut-3.2.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing giflib-5.2.1_1... [pkg-builder.dan.net.uk] | `-- Extracting giflib-5.2.1_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting webp-1.3.2_1: .......... done [pkg-builder.dan.net.uk] Extracting py39-pillow-10.2.0: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from freeglut-3.2.1: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. ===> rdkit-2023.09.6 depends on package: py39-pillow>=7.0.0 - found ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on package: py39-matplotlib>0 - not found ===> Installing existing package /packages/All/py39-matplotlib-3.8.0.pkg [pkg-builder.dan.net.uk] Installing py39-matplotlib-3.8.0... [pkg-builder.dan.net.uk] `-- Installing py39-certifi-2024.2.2... [pkg-builder.dan.net.uk] `-- Extracting py39-certifi-2024.2.2: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-contourpy-1.2.0... [pkg-builder.dan.net.uk] `-- Extracting py39-contourpy-1.2.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-cycler-0.12.1... [pkg-builder.dan.net.uk] `-- Extracting py39-cycler-0.12.1: ......... done [pkg-builder.dan.net.uk] `-- Installing py39-dateutil-2.9.0... [pkg-builder.dan.net.uk] | `-- Installing py39-six-1.16.0... [pkg-builder.dan.net.uk] | `-- Extracting py39-six-1.16.0: ....... done [pkg-builder.dan.net.uk] `-- Extracting py39-dateutil-2.9.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-fonttools-4.49.0... [pkg-builder.dan.net.uk] | `-- Installing py39-fs2-2.4.16... [pkg-builder.dan.net.uk] | | `-- Installing py39-appdirs-1.4.4... [pkg-builder.dan.net.uk] | | `-- Extracting py39-appdirs-1.4.4: ....... done [pkg-builder.dan.net.uk] | | `-- Installing py39-pytz-2024.1,1... [pkg-builder.dan.net.uk] | | `-- Extracting py39-pytz-2024.1,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-fs2-2.4.16: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-lxml-4.9.3... [pkg-builder.dan.net.uk] | | `-- Installing libxml2-2.11.7... [pkg-builder.dan.net.uk] | | `-- Extracting libxml2-2.11.7: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libxslt-1.1.37_1... [pkg-builder.dan.net.uk] | | `-- Installing libgcrypt-1.10.3_1... [pkg-builder.dan.net.uk] | | | `-- Installing libgpg-error-1.48... [pkg-builder.dan.net.uk] | | | `-- Extracting libgpg-error-1.48: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libgcrypt-1.10.3_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libxslt-1.1.37_1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-lxml-4.9.3: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-unicodedata2-15.1.0... [pkg-builder.dan.net.uk] | `-- Extracting py39-unicodedata2-15.1.0: ...... done [pkg-builder.dan.net.uk] `-- Extracting py39-fonttools-4.49.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-importlib-resources-6.3.0... [pkg-builder.dan.net.uk] | `-- Installing py39-zipp-3.18.1... [pkg-builder.dan.net.uk] | `-- Extracting py39-zipp-3.18.1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-importlib-resources-6.3.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-kiwisolver-1.4.5,1... [pkg-builder.dan.net.uk] `-- Extracting py39-kiwisolver-1.4.5,1: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-pluggy-1.4.0... [pkg-builder.dan.net.uk] `-- Extracting py39-pluggy-1.4.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-pyparsing-3.1.1... [pkg-builder.dan.net.uk] `-- Extracting py39-pyparsing-3.1.1: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-tornado-6.3.3... [pkg-builder.dan.net.uk] `-- Extracting py39-tornado-6.3.3: .......... done [pkg-builder.dan.net.uk] `-- Installing qhull-8.0.2_3,1... [pkg-builder.dan.net.uk] `-- Extracting qhull-8.0.2_3,1: .......... done [pkg-builder.dan.net.uk] Extracting py39-matplotlib-3.8.0: .......... done ===> rdkit-2023.09.6 depends on package: py39-matplotlib>0 - found ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on package: py39-reportlab>0 - not found ===> Installing existing package /packages/All/py39-reportlab-4.1.0.pkg [pkg-builder.dan.net.uk] Installing py39-reportlab-4.1.0... [pkg-builder.dan.net.uk] `-- Installing adobe-cmaps-20051217_4... [pkg-builder.dan.net.uk] | `-- Installing mkfontscale-1.2.3... [pkg-builder.dan.net.uk] | | `-- Installing libfontenc-1.1.8... [pkg-builder.dan.net.uk] | | `-- Extracting libfontenc-1.1.8: ...... done [pkg-builder.dan.net.uk] | `-- Extracting mkfontscale-1.2.3: .... done [pkg-builder.dan.net.uk] `-- Extracting adobe-cmaps-20051217_4: .......... done [pkg-builder.dan.net.uk] Extracting py39-reportlab-4.1.0: .......... done ===> rdkit-2023.09.6 depends on package: py39-reportlab>0 - found ===> Returning to build of rdkit-2023.09.6 ===> rdkit-2023.09.6 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for rdkit-2023.09.6 ===> Generating temporary packing list [ 50% 1/2] cd /wrkdirs/usr/ports/science/rdkit/work/.build/External/INCHI-API && /usr/local/bin/cmake -E copy /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/External/INCHI-API/python/noinchi.py /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2023_09_6/rdkit/Chem/inchi.py [ 50% 2/2] cd /wrkdirs/usr/ports/science/rdkit/work/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/SimDivFilters -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/SimDivFilters/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/SimDivFilters/SimilarityPickers.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/MLUtils -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/MLUtils/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/MLUtils/VoteImg.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory/entropy.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory/BitRank.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory/BitClusterer.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Scoring -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Scoring/Scoring.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Scoring/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/GrowComposite.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/BuildComposite.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/files.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/Transforms.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/Quantize.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/DataUtils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/MLData.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/Stats.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/FindQuantBounds.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/SplitData.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/EnrichPlot.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/MatOps.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/CompositeRun.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/ScreenComposite.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Standardize.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Murtagh.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Butina.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/ClusterUtils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Clusters.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Resemblance.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/murtagh_test.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/ClusterVis.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/ID3.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/randomtest.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/SigTree.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/CrossValidate.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/BuildSigTree.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/BuildQuantTree.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/TreeVis.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/QuantTree.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/PruneTree.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/Tree.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/TreeUtils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/DecTree.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/Forest.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Composite -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Composite/Composite.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Composite/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Composite/AdjustComposite.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Composite/BayesComposite.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN/KNNModel.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN/KNNClassificationModel.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN/KNNRegressionModel.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN/CrossValidate.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN/DistFunctions.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Descriptors -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Descriptors/CompoundDescriptors.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Descriptors/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Descriptors/MoleculeDescriptors.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Descriptors/Descriptors.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Descriptors/Parser.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/Network.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/CrossValidate.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/architecture.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/Trainers.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/NetNode.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/ActFuncs.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/SLT -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/SLT/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/SLT/Risk.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/AnalyzeComposite.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/NaiveBayes -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/NaiveBayes/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/NaiveBayes/CrossValidate.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/NaiveBayes/ClassificationModel.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/ModelPackage -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/ModelPackage/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/ModelPackage/PackageUtils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/ModelPackage/Packager.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/TestRunner.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/Supply.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/Filter.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/Node.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/SDSupply.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/demo.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/Output.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/Transform.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DistanceGeometry -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DistanceGeometry/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/six.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/BitEnsemble.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/TopNContainer.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/HierarchyVis.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/BitEnsembleDb.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/VectCollection.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/BitUtils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/LazySignature.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/RDLogger.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Geometry -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Geometry/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/RDConfig.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataManip -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataManip/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataManip/Metric -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataManip/Metric/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/RDRandom.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/utils -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/comhack.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/chemdraw_qax.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/retest.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/fileutils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/chemdraw.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/cactvs.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/spiral.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/listutils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/chemutils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/DbModule.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/DbUtils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/DbResultSet.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/StorageUtils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/DbReport.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/DbInfo.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/DbConnection.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ForceField -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ForceField/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Numerics -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Numerics/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/SaltRemover.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/PropertyMol.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Recap.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemicalForceFields.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/QED.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Randomize.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FragmentMatcher.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/DSViewer.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ReducedGraphs.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/PandasPatcher.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/PyMol.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MACCSkeys.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/TemplateAlign.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/SATIS.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils/TemplateExpand.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils/SDFToCSV.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils/AlignDepict.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils/DescriptorUtilities.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils/BulkTester.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Crippen.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatMaps -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatMaps/FeatMapParser.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatMaps/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatMaps/FeatMapUtils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatMaps/FeatMapPoint.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatMaps/FeatMaps.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fraggle -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fraggle/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fraggle/FraggleSim.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolSurf.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolDb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolDb/FingerprintUtils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolDb/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolDb/Loader.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolDb/Loader_orig.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolDb/Loader_sa.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Graphs.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/GraphDescriptors.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/qtCanvas.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/InteractiveRenderer.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/IPythonConsole.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/canvasbase.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/spingCanvas.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/MolDrawing.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/SimilarityMaps.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/cairoCanvas.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/mplCanvas.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/FreeSans.ttf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/aggCanvas.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fragments.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EState -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EState/AtomTypes.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EState/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EState/EState_VSA.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EState/EState.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EState/Fingerprinter.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/nbtests -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/nbtests/github4823.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/nbtests/rdkit-structure-renderer.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/nbtests/ChEMBL_quinolones.tsv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AllChem.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Descriptors.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/inchi.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/SimpleEnum -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/SimpleEnum/Enumerator.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/SimpleEnum/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/BuildFragmentCatalog.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape/SubshapeAligner.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape/BuilderUtils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape/testCombined.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape/SubshapeBuilder.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape/SubshapeObjects.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/Matcher.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/LazyGenerator.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/Generate.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/SigFactory.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/Utils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm3D -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm3D/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm3D/EmbedLib.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm3D/Pharmacophore.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm3D/ExcludedVolume.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Scaffolds -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Scaffolds/MurckoScaffold.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Scaffolds/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Scaffolds/ScaffoldNetwork.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/TorsionFingerprints.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AtomPairs -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AtomPairs/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AtomPairs/Torsions.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AtomPairs/Pairs.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AtomPairs/Sheridan.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AtomPairs/Utils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EnumerateHeterocycles.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/fmcs -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/fmcs/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/fmcs/fmcs -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemicalFeatures.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EnumerateStereoisomers.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/resonance.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/charge.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/normalize.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/standardize.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/metal.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/validations.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/tautomer.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/validate.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/utils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/fragment.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/errors.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/test_standardizer.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ShowMols.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Suppliers -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Suppliers/DbMolSupplier.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Suppliers/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Suppliers/MolSupplier.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolCatalog.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/PandasTools.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FilterCatalog.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Descriptors3D.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/SpacialScore.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints/SimilarityScreener.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints/DbFpSupplier.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints/MolSimilarity.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints/ClusterMols.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints/FingerprintMols.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FastSDMolSupplier.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/BRICS.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolKey -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolKey/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolKey/InchiInfo.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolKey/MolKey.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FragmentCatalog.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatFinderCLI.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Lipinski.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FunctionalGroups.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MCS.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Features -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Features/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Features/FeatDirUtilsRD.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Features/ShowFeats.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/RegistrationHash.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Avalon -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Avalon/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PS -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PS/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PS/fontinfo.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PS/pidPS.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PS/latin1MetricsCache.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PS/psmetrics.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/util -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/util/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/util/HTMLPiddler.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/pdfutils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/pdfgeom.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/pidPDF.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/pdfgen.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/pdfmetrics.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/pdfdoc.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/stringformat.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/patches -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/patches/Imaging-1.1.1.diff -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/patches/Imaging-1.1-fixplugin-path -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/tests -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/tests/pstests.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/tests/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/tests/pidtest.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/tests/testallps.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/examples -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/examples/formatted-strings.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/examples/tkCanvas-with-scrollbars.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pidPIL.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-24.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-10.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pil.1 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-12.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-18.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-24.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-10.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-10.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-14.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-12.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-14.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-18.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-10.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-18.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-24.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-14.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-8.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-14.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-24.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-14.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-24.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-8.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-18.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-14.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/removemedium.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-8.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-12.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-18.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/metrics.dat -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-12.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-8.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-12.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-18.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-12.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-10.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-10.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-24.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/SVG -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/SVG/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/SVG/pidSVG.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/colors.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/ReportLab -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/ReportLab/pidReportLab.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/ReportLab/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/README -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Pyart -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Pyart/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Pyart/Fontmapping.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Pyart/pidPyart.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/pid.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/utils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/pagesizes.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/WX -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/WX/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/WX/pidWxDc.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/WX/pidWX.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/TK -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/TK/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/TK/pidTK.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Qt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Qt/pidQt4.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Qt/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Qt/pidQt.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/Amadeus.ttf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/ComicNeue-Light.ttf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/ComicNeue-Regular.ttf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/ComicNeue-BoldItalic.ttf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/ComicNeue-Italic.ttf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/roboto_regular_license.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/ComicNeue-Bold.ttf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/font_dumper.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/ComicNeue-LightItalic.ttf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/OFL.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/telex_font_license.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/Telex-Regular.ttf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Fonts/amadeus_font_license.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/SmartsLib -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/SmartsLib/tests -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/SmartsLib/tests/mols.1000.pkl.gz -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/SmartsLib/tests/bench2.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/SmartsLib/tests/fps.1000.counts.pkl.gz -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/SmartsLib/RLewis_smarts.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/SmartsLib/patty_rules.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/DTDs -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/DTDs/RD_Model.dtd -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/DTDs/RD_Dataset.dtd -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/DTDs/validate.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/RDTests.sqlt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Salts.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/FunctionalGroups.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Crippen.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/NCI -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/NCI/first_5k.tpsa.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/NCI/first_200.props.sdf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/NCI/first_5K.smi -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/NCI/first_200.tpsa.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Functional_Group_Hierarchy.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/rddata.sql -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/FragmentDescriptors.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/BaseFeatures.fdef -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/RDData.sqlt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/struchk -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/struchk/checkfgs.opt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/struchk/checkfgs.trn -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/struchk/checkfgs.chk -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Pains -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Pains/wehi_pains.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Pains/test_data -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Pains/test_data/run_tests.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Pains/test_data/wehi_mols.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Pains/test_data/test_set3.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Data/Pains/README.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/Supplementary_Text_jp.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/index.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/Makefile -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/The_RDKit_database_cartridge_jp.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/Backwards_incompatible_changes_jp.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/The_RDKit_Book_jp.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/introduction_jp.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/RDKit_cookbook_jp.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/terminology_jp.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/Installation_jp.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/Getting_Started_with_RDKit_in_Python_jp.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_11.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_25.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_49.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_20.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_57.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_41.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_16.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_4.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_13.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_33.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_31.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_51.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_53.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_32.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_22.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_23.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_9.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_17.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_15.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_14.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_12.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_35.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_45.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_37.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_43.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_52.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_60.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_5.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_48.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_28.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_34.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_27.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_19.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_29.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_10.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_59.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_7.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_6.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_62.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_56.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_61.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_46.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_50.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_44.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_47.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_21.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_39.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_18.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_8.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_58.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_38.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_55.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_3.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_30.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_24.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_36.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_26.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_40.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_42.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_54.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/An_overview_of_the_RDKit_jp.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book_jp/conf.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Images -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Images/logo.ai -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Images/logo.inkscape.svg -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Images/logo.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Images/wiki -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Images/wiki/morganfp_atomenv1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Images/logo_plain.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Images/logo.lrg.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Images/logo_plain.inkscape.svg -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis/ForceField -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_CorrMat.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_CorrMat.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_Correlation.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_CorrMat.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/README -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/EnhancedStereo.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/CIPLabeling.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/SGroups.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/CodingStandards.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/Chem -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/Chem/FragmentCatalogs.html -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/gsocGeneralFileReader.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_abs_and_base.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_expand.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_abs_and_expand.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_or1_or2_base.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_expand.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_base.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_base.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_expand.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_abs_or_base.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_base.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_or1_trans_base.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_or1_cis_base.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Notebooks -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Notebooks/MolStandardize.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-GA.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-GenericCores.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-DummyCores.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Notebooks/FingerprintGenerators.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-example-lactam.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-StereoChemTest.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-RingSubstitution.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Notebooks/compounds.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-MutipleCores.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-Tests.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/RD.css -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/Cookbook.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/index.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/exts -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/exts/extapi.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example7.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example13.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example1.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example6.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example15.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example2.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example12.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example9.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example14.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example5.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/FindMyRDKit.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example16.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example8.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/CMakeLists.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example4.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example11.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example3.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example10.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example17.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/Makefile -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/GettingStartedInC++.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/api-docs.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/RDKit_Book.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/Overview.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Features.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Subshape.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Descriptors.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.Resemblance.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.FindQuantBounds.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.PackageUtils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdFMCS.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Randomize.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FeatFinderCLI.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdmolops.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.MatOps.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.DbResultSet.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.canvasbase.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapParser.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.Transforms.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.PropertyMol.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SDSupply.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolHash.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.RDPaths.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.utils.fileutils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.MLData.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.entropy.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rdMolStandardize.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolKey.InchiInfo.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapUtils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.DbMolSupplier.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Utils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.MolDrawing.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeAligner.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolDb.FingerprintUtils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.Filter.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNClassificationModel.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.VectCollection.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdTautomerQuery.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.PandasTools.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Generate.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.RDLogger.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdFreeSASA.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolCatalog.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.CrossValidate.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.DataUtils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.TemplateExpand.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Neural.Trainers.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2DQt.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.utils.listutils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.DbConnection.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.ScreenComposite.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.CrossValidate.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdEHTTools.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataManip.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.RegistrationHash.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.Murtagh.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.QED.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.Stats.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ReducedGraphs.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.IPythonConsole.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Lipinski.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.BuildQuantTree.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EState.EState.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitClusterer.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MCS.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.cairoCanvas.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolKey.MolKey.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemicalFeatures.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.BulkTester.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.Standardize.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_sa.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdReducedGraphs.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.ExcludedVolume.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMHFPFingerprint.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdDetermineBonds.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ForceField.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.utils.spiral.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.LazySignature.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clustering.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbMolSupply.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNRegressionModel.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.Supply.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Descriptors3D.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Composite.AdjustComposite.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.Node.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.DbFpSupplier.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.SimilarityMaps.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeObjects.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolKey.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Features.FeatDirUtilsRD.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolTransforms.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.files.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.RDRandom.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FragmentMatcher.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.AnalyzeComposite.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.QuantTree.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.GraphDescriptors.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.BitUtils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.SplitData.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesOutput.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.fmcs.fmcs.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdfiltercatalog.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.Transform.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.Quantize.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsembleDb.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.SigTree.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdfragcatalog.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Avalon.pyAvalonTools.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdDistGeom.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesDupeFilter.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FilterCatalog.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EState.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Scoring.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.cDataStructs.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.TorsionFingerprints.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.FraggleSim.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.DbInfo.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdChemReactions.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.DescriptorUtilities.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Numerics.rdAlignment.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rdInfoTheory.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Recap.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Torsions.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Neural.NetNode.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rdScaffoldNetwork.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Geometry.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.StorageUtils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Pairs.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdchem.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdqueries.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.PruneTree.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clusters.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.TreeUtils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FastSDMolSupplier.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdSLNParse.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.BuildComposite.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.Tree.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Utils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.SDFToCSV.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Geometry.rdGeometry.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolCatalog.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.SimilarityScreener.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.MolSimilarity.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.EmbedLib.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Numerics.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Descriptors.MoleculeDescriptors.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.FingerprintMols.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.TestRunner.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EState.Fingerprinter.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Descriptors.CompoundDescriptors.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNModel.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Graphs.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.SimDivFilters.SimilarityPickers.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DistanceGeometry.DistGeom.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Neural.Network.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.fmcs.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EnumerateHeterocycles.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.KNN.DistFunctions.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rdMetricMatrixCalc.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.DbReport.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.utils.cactvs.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Composite.Composite.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.six.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.Butina.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ShowMols.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.utils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMaps.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MACCSkeys.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitRank.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMMPA.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.SpacialScore.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EnumerateStereoisomers.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Descriptors.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_orig.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.rdBase.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsMolFilter.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.AlignDepict.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolDb.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.ID3.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.MLUtils.VoteImg.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FunctionalGroups.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolEnumerator.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Neural.ActFuncs.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.SLT.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.BuildFragmentCatalog.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.ClassificationModel.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ForceField.rdForceField.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.inchi.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.Packager.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.cQuantize.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.SATIS.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FragmentCatalog.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Crippen.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.EnrichPlot.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdFingerprintGenerator.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Matcher.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.PyMol.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.CompositeRun.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.mplCanvas.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemicalForceFields.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.PeriodicTable.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.KNN.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeBuilder.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.BuildSigTree.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapPoint.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.TemplateAlign.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolSurf.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.BRICS.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DistanceGeometry.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdAbbreviations.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsRemover.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.Forest.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.Output.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.SimDivFilters.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterVis.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdCoordGen.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Features.ShowFeats.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.TopNContainer.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.KNN.CrossValidate.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.DbModule.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdinchi.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.RDConfig.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.MLUtils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EState.AtomTypes.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdDepictor.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Sheridan.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsemble.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.SLT.Risk.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.Pharmacophore.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesSupply.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdCIPLabeler.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Neural.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdShapeHelpers.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.GrowComposite.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Subshape.BuilderUtils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdtrajectory.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.utils.chemutils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.TreeVis.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Descriptors.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolAlign.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.MurckoScaffold.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Composite.BayesComposite.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Composite.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Neural.CrossValidate.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.qtCanvas.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.Enumerator.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.SaltRemover.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.SimDivFilters.rdSimDivPickers.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Scoring.Scoring.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fragments.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.AllChem.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2D.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Avalon.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.DbUtils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.ClusterMols.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterUtils.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Parser.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EState.EState_VSA.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdmolfiles.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.aggCanvas.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbPickleSupplier.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdDeprotect.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.SigFactory.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.MolSupplier.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.DecTree.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/GettingStartedInPython.rst -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/BackwardsIncompatibleChanges.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/mcs_example_6.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_annotation_1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_33_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_6_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_1_im3.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_34_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_4.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/parastereo_2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_tb1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/mcs_example_5.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_labels_1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_2_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_8_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_21_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_30_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_30_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_9.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_0_im2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_37_im2.svg -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molE.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_6_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_23_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/mcs_example_3.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_33_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_highlights_2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/mcs_example_1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/similarity_map_crippen.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/similarity_map_charges.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_ex1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molB.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_37_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_13_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_20_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_36_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_10.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_8.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_1_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molG.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_23_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_19_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_sp3.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_10.jpg -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_20_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/mol_metadata1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_29_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/stereo_annotation.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/substruct_search_parameters1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_21_im3.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_2_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/Cc1ccccc1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/reaction1_highlight.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_32_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_21_im5.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_28_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_21_im4.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im5.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_39_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_37_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/mfp2_bit872.svg -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_17_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_34_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_sp2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_highlights_3.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_missing1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_sp4.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_oh2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molC.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_0_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_1_im2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molA.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_13_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_36_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_sp1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_35_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_6_im2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_1_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molF.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_17_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_21_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/cdk2_mol1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_6.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_21_im2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im3.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/cdk2_mol2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_labels_2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_0_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/indole1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/similarity_map_fp1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/query_atoms.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_11.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_3_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/mcs_example_4.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/mcs_example_2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im6.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/cdk2_molgrid.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/reaction1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im4.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_3.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/potential_stereo_double_bond1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/query_bonds.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/parastereo_1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molD.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_33_im2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_34_im2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/similarity_map_rf.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/ary_group.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/potential_stereo_double_bond3.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_ex2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_12.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_labels_3.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/rdk_bit1553_2.svg -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/rdk_bit1553.svg -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_22_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/similarity_map_fp2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/similarity_map_fp3.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_tb2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_22_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_5.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/query_bonds.2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/potential_stereo_double_bond2.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_7.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_highlights_1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_32_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_38_im0.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_28_im1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_oh1.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/s1p_chembldoc89753.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/bzr.smi -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/actives_5ht3.sdf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/actives_5ht3.sdf.gz -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/AmideBond.rxn -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/input.mol -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/test_multi_colours.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/5ht3ligs.sdf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/invalid.mol -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/solubility.test.sdf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/cdk2.sdf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/README.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/solubility.train.sdf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/chiral.mol -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/MinimalFeatures.fdef -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/data/bzr.sdf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/Cartridge.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/Install.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/doc/RDKit/Docs/Book/conf.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/pzc -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/pzc/p_con.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/pzc/p_con.html -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/pzc/readme.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Fastcluster -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Fastcluster/testdata -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Fastcluster/testdata/sdf2smi.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Fastcluster/testdata/cdk2.sdf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Fastcluster/testdata/converted.smi -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Fastcluster/clustered.tsv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Fastcluster/fastcluster.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Fastcluster/fp.tsv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Fastcluster/clustered_parse.tsv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Fastcluster/README.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Fastcluster/cdk2.smi -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Fastcluster/centroid.tsv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/IFG -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/IFG/ifg.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/IFG/README -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Glare -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Glare/README.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/Glare/glare.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/PBF -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/PBF/Makefile -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/PBF/pbf.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/PBF/PBFRDKit.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/PBF/testData -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/PBF/testData/egfr.sdf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/PBF/testData/egfr.out -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/PBF/PBFRDKit.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/PBF/README -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/PBF/demo.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ChiralPairs -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ChiralPairs/README.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ChiralPairs/ChiralDescriptors.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/RxnRoleAssignment -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/RxnRoleAssignment/README.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/RxnRoleAssignment/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/RxnRoleAssignment/utils.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/RxnRoleAssignment/identifyReactants.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/FreeWilson -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/FreeWilson/setup.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/FreeWilson/freewilson.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/FreeWilson/data -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810_act.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810.smi -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810_scaffold.mol -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/FreeWilson/README.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/FreeWilson/test -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/FreeWilson/test/test_freewilson.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/FreeWilson/pytest.ini -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/FreeWilson/requirements.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/assignSubstructureFilters.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/FilterSet_NIBR2019_wPubChemExamples.html -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/examples -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/examples/chembl24_structs_randomtestSample_100.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/examples/chembl24_structs_randomtestSample_100_out.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/filterExamples.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/README.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/SubstructureFilter_HitTriaging_wPubChemExamples.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/M_Kossner -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/M_Kossner/BaseFeatures_DIP2_NoMicrospecies.fdef -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/M_Kossner/README -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/M_Kossner/Frames.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/MolVS -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/MolVS/molvs_cli.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CMakeLists.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/AtomAtomSimilarity -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/AtomAtomSimilarity/AtomAtomPathSimilarity.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NP_Score -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NP_Score/npscorer.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NP_Score/publicnp.model.gz -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/NP_Score/README -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/JVE.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/AKI.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/1C9.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/6c83_complex.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/N15.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/BEG.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/5dpv_complex.png -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/Examples_CalcLigRMSD.ipynb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/CalcLigRMSD.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/4i23_1C9.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_AKI_pH74_netcharge1.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/ACP_crystal_aligned_1.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/N15_renamed.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_N15_pH74_netcharge1.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/4i24_1C9.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/crystal_aligned.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/SKE_crystal_aligned_1.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/1d4i_BEG.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_SKE_pH74_netcharge1.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/SKE_renamed.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/5dt0.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/aurka_protein_2c6e.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/lig_crystal_aligned.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/ACP_crystal_aligned_2.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/6c83.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/3w2c_N15.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/AKI_renamed.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/BEG_test.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/5dpv.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/docked_3w2p_1C9_pH74_netcharge1.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/3m11_AKI.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_ACP_pH74_netcharge1.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/1C9_renamed.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/ACP_renamed.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_JVE_pH74_netcharge1.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/4uzh_JVE.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/JVE_renamed.pdb -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/README.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/SA_Score -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/SA_Score/UnitTestSAScore.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/SA_Score/data -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/SA_Score/data/zim.100.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/SA_Score/README -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/SA_Score/fpscores.pkl.gz -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/SA_Score/sascorer.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/fraggle -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/fraggle/readme.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/fraggle/atomcontrib.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/fraggle/rdkit_tversky.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/fraggle/data -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/fraggle/data/final_fraggle_results.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/fraggle/data/fragmentation_tversky_out -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/fraggle/data/query_fragmentation.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/fraggle/data/query.smi -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/fraggle/data/ChEMBL_11265_actives.smi -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/fraggle/fraggle.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/fraggle/cxn_tversky.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/LEF -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/LEF/README.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/LEF/AddLabels.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/LEF/DistancePlot.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/LEF/ClusterFps.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/LEF/CreateFps.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/LEF/DistancePredict.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ConformerParser -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ConformerParser/Wrap -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ConformerParser/Wrap/rdConformerParser.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ConformerParser/Wrap/test_list.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ConformerParser/Wrap/CMakeLists.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ConformerParser/Wrap/testConformerParser.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ConformerParser/ConformerParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ConformerParser/ConformerParser.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ConformerParser/test_list.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ConformerParser/CMakeLists.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/ConformerParser/test.cpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/README.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/search_mmp_db.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/cansmirk.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/indexing.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/test_list.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/rfrag.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/create_mmp_db.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_mmps_sym_maxheavy.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_fragmented.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_mol_trans_output.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_input_smi.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_search_smi_output.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_mmps_maxratio.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_mmps_maxheavy.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_smiles_mol_trans.smi -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_input_trans.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_mmps_sym.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/simple.smi -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_output.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_smirks_mol_trans.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_input_trans_smarts.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_smarts_output.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_smart_output.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_smirks.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_mmps_default.csv -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_output.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_cansmirks.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_input_subs_smarts.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_input_subs.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_transfroms.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample.smi -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/test_rfrag.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Contrib/mmpa/mol_transform.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects/DbCLI -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects/DbCLI/TestDbCLI.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects/DbCLI/CreateDb.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects/DbCLI/testData -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects/DbCLI/testData/bzr.smi -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects/DbCLI/testData/bzr_q1.mol -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects/DbCLI/testData/pubchem.200.sdf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects/DbCLI/testData/README -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects/DbCLI/testData/bzr.2.smi -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects/DbCLI/testData/bzr.sdf -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects/DbCLI/SearchDb.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Projects/DbCLI/moe_like.dsc -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/create_deb_packages.sh -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/gen_rdkit_stubs -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/gen_rdkit_stubs/__main__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/gen_rdkit_stubs/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/gen_rdkit_stubs/worker.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/patch_rdkit_docstrings -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/patch_rdkit_docstrings/__main__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/patch_rdkit_docstrings/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/patch_rdkit_docstrings/clang_worker.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/test.sh -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/README.md -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/PythonFormat.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/Scripts/FeatFinderCLI.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/README -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/share/RDKit/license.txt -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/CoordGen.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdCoordGen.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdCoordGen.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1.2023.09.6 -- Up-to-date: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1.2023.09.6" to "/usr/local/lib" -- Up-to-date: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RingDecomposerLib.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitga.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitga.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitga.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitga.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeneral.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeneral.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeneral.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeneral.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/Exceptions.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/BadFileException.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/BoostStartInclude.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/BoostEndInclude.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/Dict.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/FileParseException.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/Invariant.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDAny.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDValue.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDValue-doublemagic.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDValue-taggedunion.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDLog.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDProps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDThreads.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/StreamOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/types.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/utils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/versions.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDConfig.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/LocaleSwitcher.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/Ranking.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hanoiSort.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDExportMacros.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/export.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/test.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/ConcurrentQueue.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash/hash_fwd.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash/extensions.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash/detail -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash/detail/float_functions.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash/detail/hash_float.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash/hash.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDBoost.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDBoost.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDBoost.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDBoost.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/Wrap.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/PySequenceHolder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/list_indexing_suite.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/python.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/boost_numpy.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/python_streambuf.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/rdBase.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/rdBase.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDStreams.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDStreams.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDStreams.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDStreams.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDStreams/streams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDataStructs.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDataStructs.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDataStructs.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDataStructs.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/base64.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/BitOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/BitVect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/BitVects.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/BitVectUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/DatastructsException.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/DatastructsStreamOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/DiscreteDistMat.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/DiscreteValueVect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/ExplicitBitVect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/SparseBitVect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/SparseIntVect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/FPBReader.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/MultiFPBReader.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/cDataStructs.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/cDataStructs.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeometryLib.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeometryLib.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeometryLib.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeometryLib.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Grid3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/GridUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/point.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Transform2D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Transform3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Transform.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/UniformGrid3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Utils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Geometry/rdGeometry.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Geometry/rdGeometry.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAlignment.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAlignment.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAlignment.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAlignment.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Alignment/AlignPoints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Numerics/rdAlignment.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Numerics/rdAlignment.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEigenSolvers.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEigenSolvers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEigenSolvers.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEigenSolvers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitOptimizer.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitOptimizer.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitOptimizer.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitOptimizer.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Optimizer/BFGSOpt.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Matrix.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/SquareMatrix.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/SymmMatrix.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Vector.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Conrec.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceField.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceField.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceField.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceField.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/Contrib.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/ForceField.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/AngleBend.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/BondStretch.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Contribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/DistanceConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/AngleConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/TorsionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/PositionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Nonbonded.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Params.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Inversion.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/TorsionAngle.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/AngleBend.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/BondStretch.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/StretchBend.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/OopBend.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/TorsionAngle.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/Nonbonded.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/Contribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/DistanceConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/AngleConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/TorsionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/PositionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/Params.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ForceField/rdForceField.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ForceField/rdForceField.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeometry.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeometry.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeometry.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeometry.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/BoundsMatrix.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/ChiralSet.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/ChiralViolationContrib.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/DistGeomUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/DistViolationContrib.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/FourthDimContrib.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/TriangleSmooth.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DistanceGeometry/DistGeom.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DistanceGeometry/DistGeom.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCatalogs.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCatalogs.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCatalogs.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCatalogs.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Catalogs/CatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Catalogs/Catalog.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Catalogs/CatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGraphMol.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGraphMol.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGraphMol.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGraphMol.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Atom.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/atomic_data.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/AtomIterators.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Bond.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/BondIterators.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Canon.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Chirality.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Conformer.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/details.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/GraphMol.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolPickler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/PeriodicTable.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/QueryAtom.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/QueryBond.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/QueryOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RDKitBase.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RDKitQueries.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Resonance.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RingInfo.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Rings.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ROMol.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RWMol.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SanitException.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstanceGroup.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/StereoGroup.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MonomerInfo.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/new_canon.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolBundle.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSmilesParse.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSmilesParse.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSmilesParse.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSmilesParse.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/primes.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesParse.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDepictor.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDepictor.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDepictor.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDepictor.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Depictor/DepictUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Depictor/RDDepictor.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdDepictor.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdDepictor.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMarvinParser.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMarvinParser.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMarvinParser.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMarvinParser.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MarvinParser/MarvinParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFileParsers.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFileParsers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFileParsers.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFileParsers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/CDXMLParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/FileParsers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/FileParserUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolSupplier.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolWriters.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/SequenceParsers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/SequenceWriters.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/GeneralFileReader.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MultithreadedMolSupplier.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MultithreadedSDMolSupplier.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/PNGParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructMatch.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructMatch.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructMatch.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructMatch.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Substruct/SubstructMatch.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Substruct/SubstructUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGenericGroups.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGenericGroups.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGenericGroups.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGenericGroups.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/GenericGroups/GenericGroups.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemReactions.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemReactions.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemReactions.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemReactions.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Reaction.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/Enumerate.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerateBase.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/CartesianProduct.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/RandomSample.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdChemReactions.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdChemReactions.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemTransforms.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemTransforms.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemTransforms.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemTransforms.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTautomerQuery.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTautomerQuery.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTautomerQuery.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTautomerQuery.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/TautomerQuery/TautomerQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdTautomerQuery.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdTautomerQuery.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubgraphs.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubgraphs.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubgraphs.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubgraphs.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Subgraphs/Subgraphs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFilterCatalog.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFilterCatalog.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFilterCatalog.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFilterCatalog.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdfiltercatalog.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdfiltercatalog.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFragCatalog.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFragCatalog.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFragCatalog.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFragCatalog.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdfragcatalog.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdfragcatalog.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDescriptors.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDescriptors.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDescriptors.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDescriptors.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/Crippen.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/BCUT.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/Lipinski.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolDescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolSurf.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MQN.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/Property.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/USRDescriptor.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/AtomFeat.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/OxidationNumbers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolDescriptors3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/EEM.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/PBF.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/PMI.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/AUTOCORR3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/RDF.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MORSE.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/GETAWAY.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/WHIM.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/CoulombMat.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolDescriptors.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolDescriptors.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFingerprints.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFingerprints.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFingerprints.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFingerprints.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/AtomPairs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/Fingerprints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MACCS.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MHFP.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/FingerprintGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/AtomPairGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MorganGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/RDKitFPGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/TopologicalTorsionGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/FingerprintUtil.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdFingerprintGenerator.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdFingerprintGenerator.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMHFPFingerprint.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMHFPFingerprint.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPartialCharges.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPartialCharges.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPartialCharges.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPartialCharges.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdPartialCharges.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdPartialCharges.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolTransforms.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolTransforms.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolTransforms.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolTransforms.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolTransforms/MolTransforms.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolTransforms.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolTransforms.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceFieldHelpers.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceFieldHelpers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceFieldHelpers.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceFieldHelpers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/FFConvenience.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdForceFieldHelpers.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdForceFieldHelpers.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeomHelpers.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeomHelpers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeomHelpers.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeomHelpers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdDistGeom.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdDistGeom.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolAlign.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolAlign.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolAlign.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolAlign.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitO3AAlign.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitO3AAlign.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitO3AAlign.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitO3AAlign.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolAlign/AlignMolecules.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolAlign.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolAlign.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolChemicalFeatures.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolChemicalFeatures.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolChemicalFeatures.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolChemicalFeatures.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolChemicalFeatures.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolChemicalFeatures.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitShapeHelpers.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitShapeHelpers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitShapeHelpers.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitShapeHelpers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdShapeHelpers.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdShapeHelpers.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolCatalog.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolCatalog.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolCatalog.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolCatalog.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolCatalog/MolCatalog.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolCatalog.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolCatalog.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DJS.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DHelpers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FMCS/FMCS.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FMCS/Graph.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdFMCS.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdFMCS.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolHash/MolHash.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolHash/nmmolhash.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolHash.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolHash.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MMPA/MMPA.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMMPA.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMMPA.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRascalMCES.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRascalMCES.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRascalMCES.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRascalMCES.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RascalMCES/RascalMCES.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RascalMCES/RascalOptions.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RascalMCES/RascalClusterOptions.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RascalMCES/RascalResult.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdRascalMCES.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdRascalMCES.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/CIPLabeler/CIPLabeler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/CIPLabeler/TooManyNodesException.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdCIPLabeler.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdCIPLabeler.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Deprotect/Deprotect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdDeprotect.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdDeprotect.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdReducedGraphs.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdReducedGraphs.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Trajectory/Snapshot.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Trajectory/Trajectory.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrarySerialization.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/PatternFactory.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdSubstructLibrary.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdSubstructLibrary.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecompParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdRGroupDecomposition.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolInterchange/MolInterchange.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolInterchange/details.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolInterchange.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolInterchange.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNParse.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdSLNParse.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdSLNParse.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdchem.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdchem.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdmolops.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdmolops.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdqueries.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdqueries.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdmolfiles.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdmolfiles.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdtrajectory.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdtrajectory.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Metal.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Normalize.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Validate.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Charge.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Tautomer.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Fragment.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ScaffoldNetwork/ScaffoldNetwork.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolEnumerator/MolEnumerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolEnumerator/LinkNode.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolEnumerator.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolEnumerator.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Abbreviations/Abbreviations.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdAbbreviations.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdAbbreviations.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGeneralizedSubstruct.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGeneralizedSubstruct.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGeneralizedSubstruct.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGeneralizedSubstruct.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/GeneralizedSubstruct/XQMol.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdGeneralizedSubstruct.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdGeneralizedSubstruct.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/AndQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/EqualityQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/GreaterQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/LessEqualQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/LessQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/NullQueryAlgebra.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/OrQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/Query.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/QueryObjects.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/RangeQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/SetQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/XOrQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Features/Feature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSimDivPickers.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSimDivPickers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSimDivPickers.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSimDivPickers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/DistPicker.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/LeaderPicker.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/MaxMinPicker.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKithc.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKithc.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKithc.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKithc.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Clustering.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Clustering.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/cQuantize.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/cQuantize.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1.2023.09.6 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1.2023.09.6" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdChemicalFeatures.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdChemicalFeatures.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.9/site-packages/rdkit/RDPaths.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkit/rdkit-targets.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkit/rdkit-targets-release.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkit/rdkit-config.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkit/rdkit-config-version.cmake ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-03-29T06:24:18+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=e7c943f4df' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for rdkit-2023.09.6 ===> Building rdkit-2023.09.6 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for rdkit-2023.09.6 build of science/rdkit | rdkit-2023.09.6 ended at Fri Mar 29 12:04:43 GMT 2024 build time: 05:40:39