=>> Building misc/py-toil build started at Thu Apr 4 23:27:25 BST 2024 port directory: /usr/ports/misc/py-toil package name: py39-toil-5.6.0 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1469 Mar 13 17:24 /usr/ports/misc/py-toil/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: ae18dee69c Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 11 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/11/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/misc/py-toil/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/py-toil/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/misc/py-toil/work-py39/.cache HOME=/wrkdirs/usr/ports/misc/py-toil/work-py39 TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/misc/py-toil/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/misc/py-toil/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCACHE_DIR="/root/.ccache" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/misc/py-toil/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/py-toil/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/misc/py-toil/work-py39/.cache HOME=/wrkdirs/usr/ports/misc/py-toil/work-py39 TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/misc/py-toil/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/misc/py-toil/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py39-toil" EXAMPLESDIR="share/examples/py39-toil" DATADIR="share/py39-toil" WWWDIR="www/py39-toil" ETCDIR="etc/py39-toil" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-toil DOCSDIR=/usr/local/share/doc/py39-toil EXAMPLESDIR=/usr/local/share/examples/py39-toil WWWDIR=/usr/local/www/py39-toil ETCDIR=/usr/local/etc/py39-toil --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-toil-5.6.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> py39-toil-5.6.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-toil-5.6.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-toil-5.6.0 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-toil-5.6.0 for building => SHA256 Checksum OK for toil-5.6.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-toil-5.6.0 for building ===> Extracting for py39-toil-5.6.0 => SHA256 Checksum OK for toil-5.6.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-toil-5.6.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-toil-5.6.0 depends on package: py39-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py39-setuptools-63.1.0_1.pkg [pkg-builder.dan.net.uk] Installing py39-setuptools-63.1.0_1... [pkg-builder.dan.net.uk] `-- Installing python39-3.9.18_1... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.4_1... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.4_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-2.5.1... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-2.5.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing openssl-3.0.13_1,1... [pkg-builder.dan.net.uk] | `-- Extracting openssl-3.0.13_1,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.10... [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.10: .......... done [pkg-builder.dan.net.uk] `-- Extracting python39-3.9.18_1: .......... done [pkg-builder.dan.net.uk] Extracting py39-setuptools-63.1.0_1: .......... done ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> py39-toil-5.6.0 depends on package: py39-setuptools>=63.1.0 - found ===> Returning to build of py39-toil-5.6.0 ===> py39-toil-5.6.0 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py39-toil-5.6.0 setup.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py39-toil-5.6.0 setup.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp running build running build_py creating build creating build/lib creating build/lib/toil copying src/toil/statsAndLogging.py -> build/lib/toil copying src/toil/resource.py -> build/lib/toil copying src/toil/common.py -> build/lib/toil copying src/toil/__init__.py -> build/lib/toil copying src/toil/bus.py -> build/lib/toil copying src/toil/version.py -> build/lib/toil copying src/toil/leader.py -> build/lib/toil copying src/toil/serviceManager.py -> build/lib/toil copying src/toil/worker.py -> build/lib/toil copying src/toil/realtimeLogger.py -> build/lib/toil copying src/toil/toilState.py -> build/lib/toil copying src/toil/job.py -> build/lib/toil copying src/toil/deferred.py -> build/lib/toil creating build/lib/toil/server copying src/toil/server/wsgi_app.py -> build/lib/toil/server copying src/toil/server/celery_app.py -> build/lib/toil/server copying src/toil/server/__init__.py -> build/lib/toil/server copying src/toil/server/utils.py -> build/lib/toil/server copying src/toil/server/app.py -> build/lib/toil/server creating build/lib/toil/lib copying src/toil/lib/ec2.py -> build/lib/toil/lib copying src/toil/lib/memoize.py -> build/lib/toil/lib copying src/toil/lib/objects.py -> build/lib/toil/lib copying src/toil/lib/generatedEC2Lists.py -> build/lib/toil/lib copying src/toil/lib/conversions.py -> build/lib/toil/lib copying src/toil/lib/__init__.py -> build/lib/toil/lib copying src/toil/lib/ec2nodes.py -> build/lib/toil/lib copying src/toil/lib/bioio.py -> build/lib/toil/lib copying src/toil/lib/expando.py -> build/lib/toil/lib copying src/toil/lib/io.py -> build/lib/toil/lib copying src/toil/lib/compatibility.py -> build/lib/toil/lib copying src/toil/lib/humanize.py -> build/lib/toil/lib copying src/toil/lib/docker.py -> build/lib/toil/lib copying src/toil/lib/resources.py -> build/lib/toil/lib copying src/toil/lib/misc.py -> build/lib/toil/lib copying src/toil/lib/retry.py -> build/lib/toil/lib copying src/toil/lib/throttle.py -> build/lib/toil/lib copying src/toil/lib/threading.py -> build/lib/toil/lib copying src/toil/lib/exceptions.py -> build/lib/toil/lib copying src/toil/lib/iterables.py -> build/lib/toil/lib creating build/lib/toil/wdl copying src/toil/wdl/toilwdl.py -> build/lib/toil/wdl copying src/toil/wdl/__init__.py -> build/lib/toil/wdl copying src/toil/wdl/wdl_types.py -> build/lib/toil/wdl copying src/toil/wdl/wdl_synthesis.py -> build/lib/toil/wdl copying src/toil/wdl/wdl_analysis.py -> build/lib/toil/wdl copying src/toil/wdl/wdl_functions.py -> build/lib/toil/wdl copying src/toil/wdl/utils.py -> build/lib/toil/wdl creating build/lib/toil/jobStores copying src/toil/jobStores/fileJobStore.py -> build/lib/toil/jobStores copying src/toil/jobStores/conftest.py -> build/lib/toil/jobStores copying src/toil/jobStores/__init__.py -> build/lib/toil/jobStores copying src/toil/jobStores/abstractJobStore.py -> build/lib/toil/jobStores copying src/toil/jobStores/googleJobStore.py -> build/lib/toil/jobStores copying src/toil/jobStores/utils.py -> build/lib/toil/jobStores creating build/lib/toil/provisioners copying src/toil/provisioners/__init__.py -> build/lib/toil/provisioners copying src/toil/provisioners/abstractProvisioner.py -> build/lib/toil/provisioners copying src/toil/provisioners/node.py -> build/lib/toil/provisioners copying src/toil/provisioners/gceProvisioner.py -> build/lib/toil/provisioners copying src/toil/provisioners/clusterScaler.py -> build/lib/toil/provisioners creating build/lib/toil/utils copying src/toil/utils/toilServer.py -> build/lib/toil/utils copying src/toil/utils/toilKill.py -> build/lib/toil/utils copying src/toil/utils/__init__.py -> build/lib/toil/utils copying src/toil/utils/toilRsyncCluster.py -> build/lib/toil/utils copying src/toil/utils/toilSshCluster.py -> build/lib/toil/utils copying src/toil/utils/toilDebugFile.py -> build/lib/toil/utils copying src/toil/utils/toilStats.py -> build/lib/toil/utils copying src/toil/utils/toilMain.py -> build/lib/toil/utils copying src/toil/utils/toilLaunchCluster.py -> build/lib/toil/utils copying src/toil/utils/toilDestroyCluster.py -> build/lib/toil/utils copying src/toil/utils/toilUpdateEC2Instances.py -> build/lib/toil/utils copying src/toil/utils/toilDebugJob.py -> build/lib/toil/utils copying src/toil/utils/toilStatus.py -> build/lib/toil/utils copying src/toil/utils/toilClean.py -> build/lib/toil/utils creating build/lib/toil/batchSystems copying src/toil/batchSystems/contained_executor.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/local_support.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/parasol.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/singleMachine.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/gridengine.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/__init__.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/kubernetes.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/options.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/registry.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/htcondor.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/cleanup_support.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/tes.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/torque.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/abstractGridEngineBatchSystem.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/lsf.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/abstractBatchSystem.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/slurm.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/lsfHelper.py -> build/lib/toil/batchSystems creating build/lib/toil/test copying src/toil/test/__init__.py -> build/lib/toil/test creating build/lib/toil/cwl copying src/toil/cwl/conftest.py -> build/lib/toil/cwl copying src/toil/cwl/__init__.py -> build/lib/toil/cwl copying src/toil/cwl/utils.py -> build/lib/toil/cwl copying src/toil/cwl/cwltoil.py -> build/lib/toil/cwl creating build/lib/toil/fileStores copying src/toil/fileStores/abstractFileStore.py -> build/lib/toil/fileStores copying src/toil/fileStores/__init__.py -> build/lib/toil/fileStores copying src/toil/fileStores/cachingFileStore.py -> build/lib/toil/fileStores copying src/toil/fileStores/nonCachingFileStore.py -> build/lib/toil/fileStores creating build/lib/toil/server/api_spec copying src/toil/server/api_spec/__init__.py -> build/lib/toil/server/api_spec creating build/lib/toil/server/wes copying src/toil/server/wes/__init__.py -> build/lib/toil/server/wes copying src/toil/server/wes/toil_backend.py -> build/lib/toil/server/wes copying src/toil/server/wes/abstract_backend.py -> build/lib/toil/server/wes copying src/toil/server/wes/tasks.py -> build/lib/toil/server/wes creating build/lib/toil/lib/aws copying src/toil/lib/aws/ami.py -> build/lib/toil/lib/aws copying src/toil/lib/aws/__init__.py -> build/lib/toil/lib/aws copying src/toil/lib/aws/utils.py -> build/lib/toil/lib/aws creating build/lib/toil/lib/encryption copying src/toil/lib/encryption/conftest.py -> build/lib/toil/lib/encryption copying src/toil/lib/encryption/__init__.py -> build/lib/toil/lib/encryption copying src/toil/lib/encryption/_dummy.py -> build/lib/toil/lib/encryption copying src/toil/lib/encryption/_nacl.py -> build/lib/toil/lib/encryption creating build/lib/toil/wdl/versions copying src/toil/wdl/versions/draft2.py -> build/lib/toil/wdl/versions copying src/toil/wdl/versions/v1.py -> build/lib/toil/wdl/versions copying src/toil/wdl/versions/__init__.py -> build/lib/toil/wdl/versions copying src/toil/wdl/versions/dev.py -> build/lib/toil/wdl/versions creating build/lib/toil/jobStores/aws copying src/toil/jobStores/aws/__init__.py -> build/lib/toil/jobStores/aws copying src/toil/jobStores/aws/jobStore.py -> build/lib/toil/jobStores/aws copying src/toil/jobStores/aws/utils.py -> build/lib/toil/jobStores/aws creating build/lib/toil/provisioners/aws copying src/toil/provisioners/aws/__init__.py -> build/lib/toil/provisioners/aws copying src/toil/provisioners/aws/awsProvisioner.py -> build/lib/toil/provisioners/aws creating build/lib/toil/batchSystems/mesos copying src/toil/batchSystems/mesos/conftest.py -> build/lib/toil/batchSystems/mesos copying src/toil/batchSystems/mesos/__init__.py -> build/lib/toil/batchSystems/mesos copying src/toil/batchSystems/mesos/batchSystem.py -> build/lib/toil/batchSystems/mesos copying src/toil/batchSystems/mesos/executor.py -> build/lib/toil/batchSystems/mesos creating build/lib/toil/batchSystems/mesos/test copying src/toil/batchSystems/mesos/test/__init__.py -> build/lib/toil/batchSystems/mesos/test copying src/toil/server/api_spec/workflow_execution_service.swagger.yaml -> build/lib/toil/server/api_spec =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-toil-5.6.0 depends on package: py39-addict>=2.2.1 - not found ===> Installing existing package /packages/All/py39-addict-2.4.0.pkg [pkg-builder.dan.net.uk] Installing py39-addict-2.4.0... [pkg-builder.dan.net.uk] Extracting py39-addict-2.4.0: .......... done ===> py39-toil-5.6.0 depends on package: py39-addict>=2.2.1 - found ===> Returning to build of py39-toil-5.6.0 ===> py39-toil-5.6.0 depends on package: py39-dateutil>0 - not found ===> Installing existing package /packages/All/py39-dateutil-2.9.0.pkg [pkg-builder.dan.net.uk] Installing py39-dateutil-2.9.0... [pkg-builder.dan.net.uk] `-- Installing py39-six-1.16.0... [pkg-builder.dan.net.uk] `-- Extracting py39-six-1.16.0: ....... done [pkg-builder.dan.net.uk] Extracting py39-dateutil-2.9.0: .......... done ===> py39-toil-5.6.0 depends on package: py39-dateutil>0 - found ===> Returning to build of py39-toil-5.6.0 ===> py39-toil-5.6.0 depends on package: py39-dill>=0.3.2 - not found ===> Installing existing package /packages/All/py39-dill-0.3.8.pkg [pkg-builder.dan.net.uk] Installing py39-dill-0.3.8... [pkg-builder.dan.net.uk] Extracting py39-dill-0.3.8: .......... done ===> py39-toil-5.6.0 depends on package: py39-dill>=0.3.2 - found ===> Returning to build of py39-toil-5.6.0 ===> py39-toil-5.6.0 depends on package: py39-docker>0 - not found ===> Installing existing package /packages/All/py39-docker-6.1.3.pkg [pkg-builder.dan.net.uk] Installing py39-docker-6.1.3... [pkg-builder.dan.net.uk] `-- Installing py39-docker-pycreds-0.4.0... [pkg-builder.dan.net.uk] `-- Extracting py39-docker-pycreds-0.4.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-packaging-23.2... [pkg-builder.dan.net.uk] `-- Extracting py39-packaging-23.2: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-paramiko-2.11.0_1... [pkg-builder.dan.net.uk] | `-- Installing py39-bcrypt-3.2.2_1... [pkg-builder.dan.net.uk] | | `-- Installing py39-cffi-1.16.0... [pkg-builder.dan.net.uk] | | `-- Installing py39-pycparser-2.21... [pkg-builder.dan.net.uk] | | `-- Extracting py39-pycparser-2.21: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py39-cffi-1.16.0: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-bcrypt-3.2.2_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-cryptography-42.0.5,1... [pkg-builder.dan.net.uk] | `-- Extracting py39-cryptography-42.0.5,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-pyasn1-0.5.0... [pkg-builder.dan.net.uk] | `-- Extracting py39-pyasn1-0.5.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-pynacl-1.5.0... [pkg-builder.dan.net.uk] | | `-- Installing libsodium-1.0.18... [pkg-builder.dan.net.uk] | | `-- Extracting libsodium-1.0.18: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-pynacl-1.5.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-paramiko-2.11.0_1: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-requests-2.31.0... [pkg-builder.dan.net.uk] | `-- Installing py39-certifi-2024.2.2... [pkg-builder.dan.net.uk] | `-- Extracting py39-certifi-2024.2.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-charset-normalizer-3.3.2... [pkg-builder.dan.net.uk] | `-- Extracting py39-charset-normalizer-3.3.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-idna-3.6... [pkg-builder.dan.net.uk] | `-- Extracting py39-idna-3.6: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-pysocks-1.7.1... [pkg-builder.dan.net.uk] | `-- Extracting py39-pysocks-1.7.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-urllib3-1.26.18,1... [pkg-builder.dan.net.uk] | | `-- Installing py39-openssl-23.2.0,1... [pkg-builder.dan.net.uk] | | `-- Extracting py39-openssl-23.2.0,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-urllib3-1.26.18,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-requests-2.31.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-websocket-client-1.4.2... [pkg-builder.dan.net.uk] | `-- Installing py39-python-socks-2.4.4... [pkg-builder.dan.net.uk] | | `-- Installing py39-async_timeout-4.0.3... [pkg-builder.dan.net.uk] | | `-- Extracting py39-async_timeout-4.0.3: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-curio-1.6... [pkg-builder.dan.net.uk] | | `-- Extracting py39-curio-1.6: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-trio-0.24.0... [pkg-builder.dan.net.uk] | | `-- Installing py39-async_generator-1.10... [pkg-builder.dan.net.uk] | | `-- Extracting py39-async_generator-1.10: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-attrs-23.2.0... [pkg-builder.dan.net.uk] | | `-- Extracting py39-attrs-23.2.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-exceptiongroup-1.2.0... [pkg-builder.dan.net.uk] | | `-- Extracting py39-exceptiongroup-1.2.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-outcome-1.3.0_1... [pkg-builder.dan.net.uk] | | `-- Extracting py39-outcome-1.3.0_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-sniffio-1.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting py39-sniffio-1.3.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing py39-sortedcontainers-2.4.0... [pkg-builder.dan.net.uk] | | `-- Extracting py39-sortedcontainers-2.4.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting py39-trio-0.24.0: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-python-socks-2.4.4: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-wsaccel-0.6.6... [pkg-builder.dan.net.uk] | `-- Extracting py39-wsaccel-0.6.6: ......... done [pkg-builder.dan.net.uk] `-- Extracting py39-websocket-client-1.4.2: .......... done [pkg-builder.dan.net.uk] Extracting py39-docker-6.1.3: .......... done ===== Message from py39-urllib3-1.26.18,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. ===== Message from py39-wsaccel-0.6.6: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Upstream ceased development. ===> py39-toil-5.6.0 depends on package: py39-docker>0 - found ===> Returning to build of py39-toil-5.6.0 ===> py39-toil-5.6.0 depends on package: py39-enlighten>=1.5.2 - not found ===> Installing existing package /packages/All/py39-enlighten-1.12.3.pkg [pkg-builder.dan.net.uk] Installing py39-enlighten-1.12.3... [pkg-builder.dan.net.uk] `-- Installing py39-blessed-1.20.0... [pkg-builder.dan.net.uk] | `-- Installing py39-wcwidth-0.2.8... [pkg-builder.dan.net.uk] | `-- Extracting py39-wcwidth-0.2.8: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-blessed-1.20.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-prefixed-0.7.0... [pkg-builder.dan.net.uk] `-- Extracting py39-prefixed-0.7.0: ........ done [pkg-builder.dan.net.uk] Extracting py39-enlighten-1.12.3: .......... done ===> py39-toil-5.6.0 depends on package: py39-enlighten>=1.5.2 - found ===> Returning to build of py39-toil-5.6.0 ===> py39-toil-5.6.0 depends on package: py39-psutil>=3.0.1 - not found ===> Installing existing package /packages/All/py39-psutil-5.9.8.pkg [pkg-builder.dan.net.uk] Installing py39-psutil-5.9.8... [pkg-builder.dan.net.uk] Extracting py39-psutil-5.9.8: .......... done ===> py39-toil-5.6.0 depends on package: py39-psutil>=3.0.1 - found ===> Returning to build of py39-toil-5.6.0 ===> py39-toil-5.6.0 depends on package: py39-pytz>=2012 - not found ===> Installing existing package /packages/All/py39-pytz-2024.1,1.pkg [pkg-builder.dan.net.uk] Installing py39-pytz-2024.1,1... [pkg-builder.dan.net.uk] Extracting py39-pytz-2024.1,1: .......... done ===> py39-toil-5.6.0 depends on package: py39-pytz>=2012 - found ===> Returning to build of py39-toil-5.6.0 ===> py39-toil-5.6.0 depends on package: py39-requests>=2 - found ===> py39-toil-5.6.0 depends on package: py39-tes>0 - not found ===> Installing existing package /packages/All/py39-tes-1.1.1.pkg [pkg-builder.dan.net.uk] Installing py39-tes-1.1.1... [pkg-builder.dan.net.uk] `-- Installing py39-click-8.1.7... [pkg-builder.dan.net.uk] | `-- Installing py39-importlib-metadata-7.0.2... [pkg-builder.dan.net.uk] | | `-- Installing py39-zipp-3.18.1... [pkg-builder.dan.net.uk] | | `-- Extracting py39-zipp-3.18.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-importlib-metadata-7.0.2: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-click-8.1.7: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-elasticsearch-7.17.9... [pkg-builder.dan.net.uk] `-- Extracting py39-elasticsearch-7.17.9: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-texttable-1.7.0... [pkg-builder.dan.net.uk] `-- Extracting py39-texttable-1.7.0: ....... done [pkg-builder.dan.net.uk] Extracting py39-tes-1.1.1: .......... done ===> py39-toil-5.6.0 depends on package: py39-tes>0 - found ===> Returning to build of py39-toil-5.6.0 ===> py39-toil-5.6.0 depends on package: py39-yaml>=5 - not found ===> Installing existing package /packages/All/py39-yaml-6.0.1.pkg [pkg-builder.dan.net.uk] Installing py39-yaml-6.0.1... [pkg-builder.dan.net.uk] Extracting py39-yaml-6.0.1: .......... done ===> py39-toil-5.6.0 depends on package: py39-yaml>=5 - found ===> Returning to build of py39-toil-5.6.0 ===> py39-toil-5.6.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-toil-5.6.0 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py39-toil-5.6.0 ===> Generating temporary packing list setup.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9 creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/statsAndLogging.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server copying build/lib/toil/server/wsgi_app.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server copying build/lib/toil/server/celery_app.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server copying build/lib/toil/server/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/api_spec copying build/lib/toil/server/api_spec/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/api_spec copying build/lib/toil/server/api_spec/workflow_execution_service.swagger.yaml -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/api_spec creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/wes copying build/lib/toil/server/wes/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/wes copying build/lib/toil/server/wes/toil_backend.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/wes copying build/lib/toil/server/wes/abstract_backend.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/wes copying build/lib/toil/server/wes/tasks.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/wes copying build/lib/toil/server/utils.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server copying build/lib/toil/server/app.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/ec2.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/memoize.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/objects.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws copying build/lib/toil/lib/aws/ami.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws copying build/lib/toil/lib/aws/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws copying build/lib/toil/lib/aws/utils.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws copying build/lib/toil/lib/generatedEC2Lists.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/conversions.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/ec2nodes.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/bioio.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/expando.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/io.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption copying build/lib/toil/lib/encryption/conftest.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption copying build/lib/toil/lib/encryption/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption copying build/lib/toil/lib/encryption/_dummy.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption copying build/lib/toil/lib/encryption/_nacl.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption copying build/lib/toil/lib/compatibility.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/humanize.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/docker.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/resources.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/misc.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/retry.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/throttle.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/threading.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/exceptions.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/iterables.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/resource.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/common.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/bus.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/version.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions copying build/lib/toil/wdl/versions/draft2.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions copying build/lib/toil/wdl/versions/v1.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions copying build/lib/toil/wdl/versions/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions copying build/lib/toil/wdl/versions/dev.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions copying build/lib/toil/wdl/toilwdl.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/wdl_types.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/wdl_synthesis.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/wdl_analysis.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/wdl_functions.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/utils.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores copying build/lib/toil/jobStores/fileJobStore.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws copying build/lib/toil/jobStores/aws/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws copying build/lib/toil/jobStores/aws/jobStore.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws copying build/lib/toil/jobStores/aws/utils.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws copying build/lib/toil/jobStores/conftest.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores copying build/lib/toil/jobStores/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores copying build/lib/toil/jobStores/abstractJobStore.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores copying build/lib/toil/jobStores/googleJobStore.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores copying build/lib/toil/jobStores/utils.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores copying build/lib/toil/leader.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/aws copying build/lib/toil/provisioners/aws/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/aws copying build/lib/toil/provisioners/aws/awsProvisioner.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/aws copying build/lib/toil/provisioners/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners copying build/lib/toil/provisioners/abstractProvisioner.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners copying build/lib/toil/provisioners/node.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners copying build/lib/toil/provisioners/gceProvisioner.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners copying build/lib/toil/provisioners/clusterScaler.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilServer.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilKill.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilRsyncCluster.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilSshCluster.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilDebugFile.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilStats.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilMain.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilLaunchCluster.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilDestroyCluster.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilUpdateEC2Instances.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilDebugJob.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilStatus.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilClean.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/serviceManager.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/worker.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/realtimeLogger.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos copying build/lib/toil/batchSystems/mesos/conftest.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos copying build/lib/toil/batchSystems/mesos/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos copying build/lib/toil/batchSystems/mesos/batchSystem.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/test copying build/lib/toil/batchSystems/mesos/test/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/test copying build/lib/toil/batchSystems/mesos/executor.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos copying build/lib/toil/batchSystems/contained_executor.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/local_support.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/parasol.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/singleMachine.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/gridengine.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/kubernetes.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/options.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/registry.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/htcondor.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/cleanup_support.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/tes.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/torque.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/abstractGridEngineBatchSystem.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/lsf.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/abstractBatchSystem.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/slurm.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/lsfHelper.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/toilState.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/test copying build/lib/toil/test/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/test creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/cwl copying build/lib/toil/cwl/conftest.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/cwl copying build/lib/toil/cwl/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/cwl copying build/lib/toil/cwl/utils.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/cwl copying build/lib/toil/cwl/cwltoil.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/cwl copying build/lib/toil/job.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/deferred.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil creating /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/fileStores copying build/lib/toil/fileStores/abstractFileStore.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/fileStores copying build/lib/toil/fileStores/__init__.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/fileStores copying build/lib/toil/fileStores/cachingFileStore.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/fileStores copying build/lib/toil/fileStores/nonCachingFileStore.py -> /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/fileStores byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/statsAndLogging.py to statsAndLogging.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/wsgi_app.py to wsgi_app.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/celery_app.py to celery_app.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/api_spec/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/wes/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/wes/toil_backend.py to toil_backend.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/wes/abstract_backend.py to abstract_backend.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/wes/tasks.py to tasks.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/utils.py to utils.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/server/app.py to app.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/ec2.py to ec2.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/memoize.py to memoize.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/objects.py to objects.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws/ami.py to ami.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws/utils.py to utils.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/generatedEC2Lists.py to generatedEC2Lists.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/conversions.py to conversions.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/ec2nodes.py to ec2nodes.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/bioio.py to bioio.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/expando.py to expando.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/io.py to io.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption/conftest.py to conftest.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption/_dummy.py to _dummy.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption/_nacl.py to _nacl.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/compatibility.py to compatibility.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/humanize.py to humanize.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/docker.py to docker.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/resources.py to resources.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/misc.py to misc.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/retry.py to retry.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/throttle.py to throttle.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/threading.py to threading.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/exceptions.py to exceptions.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/lib/iterables.py to iterables.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/resource.py to resource.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/common.py to common.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/bus.py to bus.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/version.py to version.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions/draft2.py to draft2.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions/v1.py to v1.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions/dev.py to dev.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/toilwdl.py to toilwdl.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/wdl_types.py to wdl_types.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/wdl_synthesis.py to wdl_synthesis.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/wdl_analysis.py to wdl_analysis.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/wdl_functions.py to wdl_functions.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/wdl/utils.py to utils.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/fileJobStore.py to fileJobStore.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws/jobStore.py to jobStore.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws/utils.py to utils.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/conftest.py to conftest.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/abstractJobStore.py to abstractJobStore.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/googleJobStore.py to googleJobStore.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/utils.py to utils.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/leader.py to leader.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/aws/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/aws/awsProvisioner.py to awsProvisioner.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/abstractProvisioner.py to abstractProvisioner.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/node.py to node.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/gceProvisioner.py to gceProvisioner.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/clusterScaler.py to clusterScaler.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilServer.py to toilServer.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilKill.py to toilKill.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilRsyncCluster.py to toilRsyncCluster.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilSshCluster.py to toilSshCluster.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilDebugFile.py to toilDebugFile.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilStats.py to toilStats.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilMain.py to toilMain.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilLaunchCluster.py to toilLaunchCluster.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilDestroyCluster.py to toilDestroyCluster.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilUpdateEC2Instances.py to toilUpdateEC2Instances.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilDebugJob.py to toilDebugJob.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilStatus.py to toilStatus.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilClean.py to toilClean.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/serviceManager.py to serviceManager.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/worker.py to worker.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/realtimeLogger.py to realtimeLogger.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/conftest.py to conftest.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/batchSystem.py to batchSystem.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/test/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/executor.py to executor.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/contained_executor.py to contained_executor.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/local_support.py to local_support.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/parasol.py to parasol.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/singleMachine.py to singleMachine.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/gridengine.py to gridengine.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/kubernetes.py to kubernetes.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/options.py to options.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/registry.py to registry.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/htcondor.py to htcondor.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/cleanup_support.py to cleanup_support.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/tes.py to tes.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/torque.py to torque.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/abstractGridEngineBatchSystem.py to abstractGridEngineBatchSystem.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/lsf.py to lsf.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/abstractBatchSystem.py to abstractBatchSystem.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/slurm.py to slurm.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/lsfHelper.py to lsfHelper.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/toilState.py to toilState.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/test/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/cwl/conftest.py to conftest.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/cwl/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/cwl/utils.py to utils.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/cwl/cwltoil.py to cwltoil.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/job.py to job.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/deferred.py to deferred.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/fileStores/abstractFileStore.py to abstractFileStore.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/fileStores/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/fileStores/cachingFileStore.py to cachingFileStore.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil/fileStores/nonCachingFileStore.py to nonCachingFileStore.cpython-39.pyc writing byte-compilation script '/tmp/tmp8ptl8vd8.py' /usr/local/bin/python3.9 /tmp/tmp8ptl8vd8.py removing /tmp/tmp8ptl8vd8.py running install_egg_info running egg_info writing src/toil.egg-info/PKG-INFO writing dependency_links to src/toil.egg-info/dependency_links.txt writing entry points to src/toil.egg-info/entry_points.txt writing requirements to src/toil.egg-info/requires.txt writing top-level names to src/toil.egg-info/top_level.txt reading manifest file 'src/toil.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/toil.egg-info/SOURCES.txt' Copying src/toil.egg-info to /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/lib/python3.9/site-packages/toil-5.6.0-py3.9.egg-info running install_scripts Installing _toil_contained_executor script to /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/bin Installing _toil_mesos_executor script to /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/bin Installing _toil_worker script to /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/bin Installing cwltoil script to /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/bin Installing toil script to /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/bin Installing toil-cwl-runner script to /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/bin Installing toil-wdl-runner script to /wrkdirs/usr/ports/misc/py-toil/work-py39/stage/usr/local/bin writing list of installed files to '/wrkdirs/usr/ports/misc/py-toil/work-py39/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/_toil_contained_executor --> bin/_toil_contained_executor-3.9 Link: @bin/_toil_contained_executor --> bin/_toil_contained_executor-3.9 Move: bin/_toil_mesos_executor --> bin/_toil_mesos_executor-3.9 Link: @bin/_toil_mesos_executor --> bin/_toil_mesos_executor-3.9 Move: bin/_toil_worker --> bin/_toil_worker-3.9 Link: @bin/_toil_worker --> bin/_toil_worker-3.9 Move: bin/cwltoil --> bin/cwltoil-3.9 Link: @bin/cwltoil --> bin/cwltoil-3.9 Move: bin/toil --> bin/toil-3.9 Link: @bin/toil --> bin/toil-3.9 Move: bin/toil-cwl-runner --> bin/toil-cwl-runner-3.9 Link: @bin/toil-cwl-runner --> bin/toil-cwl-runner-3.9 Move: bin/toil-wdl-runner --> bin/toil-wdl-runner-3.9 Link: @bin/toil-wdl-runner --> bin/toil-wdl-runner-3.9 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-04-04T22:27:25+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=ae18dee69c' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py39-toil-5.6.0 ===> Building py39-toil-5.6.0 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py39-toil-5.6.0 build of misc/py-toil@py39 | py39-toil-5.6.0 ended at Thu Apr 4 23:27:42 BST 2024 build time: 00:00:17