=>> Building biology/py-ont-fast5-api build started at Fri Mar 29 14:33:35 GMT 2024 port directory: /usr/ports/biology/py-ont-fast5-api package name: py39-ont-fast5-api-4.0.2_1 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1190 Apr 24 2023 /usr/ports/biology/py-ont-fast5-api/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: 8d3e020ed0 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 20 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root 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--End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/.cache 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EXAMPLESDIR=/usr/local/share/examples/py39-ont-fast5-api WWWDIR=/usr/local/www/py39-ont-fast5-api ETCDIR=/usr/local/etc/py39-ont-fast5-api --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-ont-fast5-api-4.0.2_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> py39-ont-fast5-api-4.0.2_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-ont-fast5-api-4.0.2_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-ont-fast5-api-4.0.2_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-ont-fast5-api-4.0.2_1 for building => SHA256 Checksum OK for nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-ont-fast5-api-4.0.2_1 for building ===> Extracting for py39-ont-fast5-api-4.0.2_1 => SHA256 Checksum OK for nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-ont-fast5-api-4.0.2_1 ===> Applying FreeBSD patches for py39-ont-fast5-api-4.0.2_1 from /usr/ports/biology/py-ont-fast5-api/files /bin/rm -f /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/ont_fast5_api-release_4.0.2/ont_fast5_api/vbz_plugin/* =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py39-setuptools-63.1.0_1.pkg [pkg-builder.dan.net.uk] Installing py39-setuptools-63.1.0_1... 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They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-setuptools>=63.1.0 - found ===> Returning to build of py39-ont-fast5-api-4.0.2_1 ===> py39-ont-fast5-api-4.0.2_1 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-ont-fast5-api-4.0.2_1 depends on shared library: libvbz_hdf_plugin.so - not found ===> Installing existing package /packages/All/vbz-compression-1.0.3.pkg [pkg-builder.dan.net.uk] Installing vbz-compression-1.0.3... [pkg-builder.dan.net.uk] `-- Installing hdf5-1.12.2_2,1... [pkg-builder.dan.net.uk] `-- Extracting hdf5-1.12.2_2,1: .......... done [pkg-builder.dan.net.uk] `-- Installing zstd-1.5.5_1... 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[pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-colamd-3.3.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-cholmod-5.2.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting suitesparse-umfpack-6.3.2: .......... done [pkg-builder.dan.net.uk] Extracting py39-numpy-1.25.0_6,1: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> Returning to build of py39-ont-fast5-api-4.0.2_1 ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-h5py>=2.2.0 - not found ===> Installing existing package /packages/All/py39-h5py-3.10.0.pkg [pkg-builder.dan.net.uk] Installing py39-h5py-3.10.0... 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[pkg-builder.dan.net.uk] Extracting py39-progressbar-2.5: .......... done ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-progressbar>0 - found ===> Returning to build of py39-ont-fast5-api-4.0.2_1 ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-ont-fast5-api-4.0.2_1 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py39-ont-fast5-api-4.0.2_1 ===> Generating temporary packing list running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py creating build creating build/lib creating build/lib/ont_fast5_api copying ont_fast5_api/helpers.py -> build/lib/ont_fast5_api copying ont_fast5_api/multi_fast5.py -> build/lib/ont_fast5_api copying ont_fast5_api/static_data.py -> build/lib/ont_fast5_api copying ont_fast5_api/compression_settings.py -> build/lib/ont_fast5_api copying ont_fast5_api/fast5_read.py -> build/lib/ont_fast5_api copying ont_fast5_api/__init__.py -> build/lib/ont_fast5_api copying ont_fast5_api/fast5_info.py -> build/lib/ont_fast5_api copying ont_fast5_api/fast5_file.py -> build/lib/ont_fast5_api copying ont_fast5_api/fast5_interface.py -> build/lib/ont_fast5_api copying ont_fast5_api/data_sanitisation.py -> build/lib/ont_fast5_api creating build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/basecall_1d.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/basecall_2d.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/__init__.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/base_tool.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/segmentation.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/event_detection.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/alignment.py -> build/lib/ont_fast5_api/analysis_tools creating build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/demux_fast5.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/conversion_utils.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/compress_fast5.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/single_to_multi_fast5.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/__init__.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/fast5_subset.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/multi_to_single_fast5.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/check_file_compression.py -> build/lib/ont_fast5_api/conversion_tools running install_lib creating /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9 creating /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages creating /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/helpers.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/multi_fast5.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/static_data.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/compression_settings.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/fast5_read.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api creating /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/basecall_1d.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/basecall_2d.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/__init__.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/base_tool.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/segmentation.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/event_detection.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/alignment.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/__init__.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/fast5_info.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/fast5_file.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/fast5_interface.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api creating /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/demux_fast5.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/conversion_utils.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/compress_fast5.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/single_to_multi_fast5.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/__init__.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/fast5_subset.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/multi_to_single_fast5.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/check_file_compression.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/data_sanitisation.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/helpers.py to helpers.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/multi_fast5.py to multi_fast5.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/static_data.py to static_data.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/compression_settings.py to compression_settings.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/fast5_read.py to fast5_read.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/basecall_1d.py to basecall_1d.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/basecall_2d.py to basecall_2d.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/base_tool.py to base_tool.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/segmentation.py to segmentation.cpython-39.pyc /usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/segmentation.py:92: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/event_detection.py to event_detection.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/alignment.py to alignment.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/fast5_info.py to fast5_info.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/fast5_file.py to fast5_file.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/fast5_interface.py to fast5_interface.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/demux_fast5.py to demux_fast5.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/conversion_utils.py to conversion_utils.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/compress_fast5.py to compress_fast5.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/single_to_multi_fast5.py to single_to_multi_fast5.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/fast5_subset.py to fast5_subset.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/multi_to_single_fast5.py to multi_to_single_fast5.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/check_file_compression.py to check_file_compression.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/data_sanitisation.py to data_sanitisation.cpython-39.pyc writing byte-compilation script '/tmp/tmpfc76x4id.py' /usr/local/bin/python3.9 /tmp/tmpfc76x4id.py /usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/segmentation.py:92: SyntaxWarning: "is" with a literal. Did you mean "=="? removing /tmp/tmpfc76x4id.py running install_egg_info running egg_info creating ont_fast5_api.egg-info writing ont_fast5_api.egg-info/PKG-INFO writing dependency_links to ont_fast5_api.egg-info/dependency_links.txt writing entry points to ont_fast5_api.egg-info/entry_points.txt writing requirements to ont_fast5_api.egg-info/requires.txt writing top-level names to ont_fast5_api.egg-info/top_level.txt writing manifest file 'ont_fast5_api.egg-info/SOURCES.txt' reading manifest file 'ont_fast5_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.md' no previously-included directories found matching 'build' no previously-included directories found matching 'docs' adding license file 'LICENSE.md' writing manifest file 'ont_fast5_api.egg-info/SOURCES.txt' Copying ont_fast5_api.egg-info to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api-4.0.1-py3.9.egg-info running install_scripts Installing check_compression script to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/bin Installing compress_fast5 script to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/bin Installing demux_fast5 script to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/bin Installing fast5_subset script to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/bin Installing multi_to_single_fast5 script to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/bin Installing single_to_multi_fast5 script to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/stage/usr/local/bin writing list of installed files to '/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py39/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/check_compression --> bin/check_compression-3.9 Link: @bin/check_compression --> bin/check_compression-3.9 Move: bin/compress_fast5 --> bin/compress_fast5-3.9 Link: @bin/compress_fast5 --> bin/compress_fast5-3.9 Move: bin/demux_fast5 --> bin/demux_fast5-3.9 Link: @bin/demux_fast5 --> bin/demux_fast5-3.9 Move: bin/fast5_subset --> bin/fast5_subset-3.9 Link: @bin/fast5_subset --> bin/fast5_subset-3.9 Move: bin/multi_to_single_fast5 --> bin/multi_to_single_fast5-3.9 Link: @bin/multi_to_single_fast5 --> bin/multi_to_single_fast5-3.9 Move: bin/single_to_multi_fast5 --> bin/single_to_multi_fast5-3.9 Link: @bin/single_to_multi_fast5 --> bin/single_to_multi_fast5-3.9 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-03-29T14:33:35+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=8d3e020ed0' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py39-ont-fast5-api-4.0.2_1 ===> Building py39-ont-fast5-api-4.0.2_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py39-ont-fast5-api-4.0.2_1 build of biology/py-ont-fast5-api@py39 | py39-ont-fast5-api-4.0.2_1 ended at Fri Mar 29 14:34:03 GMT 2024 build time: 00:00:29