=>> Building science/py-netCDF4 build started at Wed Mar 27 19:31:43 GMT 2024 port directory: /usr/ports/science/py-netCDF4 package name: py39-netCDF4-1.6.5 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: bofh@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1578 Oct 28 13:53 /usr/ports/science/py-netCDF4/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: 07abd63525 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 03 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/03/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py39-netCDF4-1.6.5: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- bofh@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py39 TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/py-netCDF4/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-netCDF4/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCACHE_DIR="/root/.ccache" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py39 TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/py-netCDF4/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-netCDF4/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py39-netCDF4" EXAMPLESDIR="share/examples/py39-netCDF4" DATADIR="share/py39-netCDF4" WWWDIR="www/py39-netCDF4" ETCDIR="etc/py39-netCDF4" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-netCDF4 DOCSDIR=/usr/local/share/doc/py39-netCDF4 EXAMPLESDIR=/usr/local/share/examples/py39-netCDF4 WWWDIR=/usr/local/www/py39-netCDF4 ETCDIR=/usr/local/etc/py39-netCDF4 --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-netCDF4-1.6.5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> py39-netCDF4-1.6.5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-netCDF4-1.6.5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-netCDF4-1.6.5 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-netCDF4-1.6.5 for building => SHA256 Checksum OK for Unidata-netcdf4-python-v1.6.5rel_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-netCDF4-1.6.5 for building ===> Extracting for py39-netCDF4-1.6.5 => SHA256 Checksum OK for Unidata-netcdf4-python-v1.6.5rel_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-netCDF4-1.6.5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-netCDF4-1.6.5 depends on package: py39-numpy>=1.16,1<1.26,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg [pkg-builder.dan.net.uk] Installing py39-numpy-1.25.0_6,1... [pkg-builder.dan.net.uk] `-- Installing gcc13-13.2.0_4... [pkg-builder.dan.net.uk] | `-- Installing binutils-2.40_5,1... [pkg-builder.dan.net.uk] | | `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] | | `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.5_1... [pkg-builder.dan.net.uk] | | `-- Installing liblz4-1.9.4_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting liblz4-1.9.4_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.5_1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting binutils-2.40_5,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | `-- Installing mpfr-4.2.1,1... [pkg-builder.dan.net.uk] | | `-- Extracting mpfr-4.2.1,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] `-- Extracting gcc13-13.2.0_4: .......... done create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) [pkg-builder.dan.net.uk] `-- Installing openblas-0.3.25,2... [pkg-builder.dan.net.uk] `-- Extracting openblas-0.3.25,2: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-setuptools-63.1.0_1... [pkg-builder.dan.net.uk] | `-- Installing python39-3.9.18_1... [pkg-builder.dan.net.uk] | | `-- Installing libffi-3.4.4_1... [pkg-builder.dan.net.uk] | | `-- Extracting libffi-3.4.4_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing mpdecimal-2.5.1... [pkg-builder.dan.net.uk] | | `-- Extracting mpdecimal-2.5.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing openssl-3.0.13_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting openssl-3.0.13_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing readline-8.2.10... [pkg-builder.dan.net.uk] | | `-- Extracting readline-8.2.10: .......... done [pkg-builder.dan.net.uk] | `-- Extracting python39-3.9.18_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-setuptools-63.1.0_1: .......... done [pkg-builder.dan.net.uk] `-- Installing suitesparse-umfpack-6.3.2... [pkg-builder.dan.net.uk] | `-- Installing suitesparse-amd-3.3.1... [pkg-builder.dan.net.uk] | | `-- Installing suitesparse-config-7.6.1... [pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-config-7.6.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-amd-3.3.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-camd-3.3.1... [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-camd-3.3.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-ccolamd-3.3.2... [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-ccolamd-3.3.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-cholmod-5.2.0... [pkg-builder.dan.net.uk] | | `-- Installing suitesparse-colamd-3.3.2... [pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-colamd-3.3.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-cholmod-5.2.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting suitesparse-umfpack-6.3.2: .......... done [pkg-builder.dan.net.uk] Extracting py39-numpy-1.25.0_6,1: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> py39-netCDF4-1.6.5 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> Returning to build of py39-netCDF4-1.6.5 ===> py39-netCDF4-1.6.5 depends on executable: cython-3.9 - not found ===> Installing existing package /packages/All/py39-cython-0.29.37.pkg [pkg-builder.dan.net.uk] Installing py39-cython-0.29.37... [pkg-builder.dan.net.uk] Extracting py39-cython-0.29.37: .......... done ===> py39-netCDF4-1.6.5 depends on executable: cython-3.9 - found ===> Returning to build of py39-netCDF4-1.6.5 ===> py39-netCDF4-1.6.5 depends on package: py39-setuptools>=63.1.0 - found ===> py39-netCDF4-1.6.5 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-netCDF4-1.6.5 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.12.2_2,1.pkg [pkg-builder.dan.net.uk] Installing hdf5-1.12.2_2,1... [pkg-builder.dan.net.uk] Extracting hdf5-1.12.2_2,1: .......... done ===> py39-netCDF4-1.6.5 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of py39-netCDF4-1.6.5 ===> py39-netCDF4-1.6.5 depends on shared library: libnetcdf.so - not found ===> Installing existing package /packages/All/netcdf-4.9.2_1.pkg [pkg-builder.dan.net.uk] Installing netcdf-4.9.2_1... [pkg-builder.dan.net.uk] `-- Installing curl-8.6.0... [pkg-builder.dan.net.uk] | `-- Installing brotli-1.1.0,1... [pkg-builder.dan.net.uk] | `-- Extracting brotli-1.1.0,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libidn2-2.3.7... [pkg-builder.dan.net.uk] | | `-- Installing libunistring-1.2... [pkg-builder.dan.net.uk] | | `-- Extracting libunistring-1.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libidn2-2.3.7: .......... done [pkg-builder.dan.net.uk] | `-- Installing libnghttp2-1.60.0... [pkg-builder.dan.net.uk] | `-- Extracting libnghttp2-1.60.0: ....... done [pkg-builder.dan.net.uk] | `-- Installing librtmp-2.4.20190330_1... [pkg-builder.dan.net.uk] | `-- Extracting librtmp-2.4.20190330_1: ......... done [pkg-builder.dan.net.uk] | `-- Installing libssh2-1.11.0_1,3... [pkg-builder.dan.net.uk] | `-- Extracting libssh2-1.11.0_1,3: .......... done [pkg-builder.dan.net.uk] `-- Extracting curl-8.6.0: .......... done [pkg-builder.dan.net.uk] `-- Installing libaec-1.1.2... [pkg-builder.dan.net.uk] `-- Extracting libaec-1.1.2: .......... done [pkg-builder.dan.net.uk] `-- Installing pkgconf-2.1.1,1... [pkg-builder.dan.net.uk] `-- Extracting pkgconf-2.1.1,1: .......... done [pkg-builder.dan.net.uk] Extracting netcdf-4.9.2_1: .......... done ===> py39-netCDF4-1.6.5 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> Returning to build of py39-netCDF4-1.6.5 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py39-netCDF4-1.6.5 /usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) reading from setup.cfg... using /usr/local/bin/nc-config... checking /usr/local/include ... HDF5 library version: 1.12.2 headers found in /usr/local/include using netcdf library version b'4.9.2' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib has nc_create_mem function netcdf lib has cdf-5 format capability netcdf lib does not have netcdf4 parallel functions netcdf lib does not have pnetcdf parallel functions netcdf lib has bit-grooming/quantization functions netcdf lib has zstandard compression functions netcdf lib has bzip2 compression functions netcdf lib has blosc compression functions netcdf lib does not have szip compression functions netcdf lib has nc_set_alignment function netcdf lib has nc_inq_filter_avail function netcdf lib has nc_rc_set function NETCDF_PLUGIN_DIR not set, no netcdf compression plugins installed running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py39-netCDF4-1.6.5 /usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) reading from setup.cfg... using /usr/local/bin/nc-config... checking /usr/local/include ... HDF5 library version: 1.12.2 headers found in /usr/local/include using netcdf library version b'4.9.2' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib has nc_create_mem function netcdf lib has cdf-5 format capability netcdf lib does not have netcdf4 parallel functions netcdf lib does not have pnetcdf parallel functions netcdf lib has bit-grooming/quantization functions netcdf lib has zstandard compression functions netcdf lib has bzip2 compression functions netcdf lib has blosc compression functions netcdf lib does not have szip compression functions netcdf lib has nc_set_alignment function netcdf lib has nc_inq_filter_avail function netcdf lib has nc_rc_set function NETCDF_PLUGIN_DIR not set, no netcdf compression plugins installed running build running build_py creating build creating build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39 creating build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/netCDF4 copying src/netCDF4/__init__.py -> build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/netCDF4 copying src/netCDF4/utils.py -> build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/netCDF4 running egg_info creating src/netCDF4.egg-info writing src/netCDF4.egg-info/PKG-INFO writing dependency_links to src/netCDF4.egg-info/dependency_links.txt writing entry points to src/netCDF4.egg-info/entry_points.txt writing requirements to src/netCDF4.egg-info/requires.txt writing top-level names to src/netCDF4.egg-info/top_level.txt writing manifest file 'src/netCDF4.egg-info/SOURCES.txt' reading manifest file 'src/netCDF4.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'examples/data' warning: no previously-included files found matching 'src/netCDF4/_netCDF4.c' adding license file 'LICENSE' writing manifest file 'src/netCDF4.egg-info/SOURCES.txt' copying src/netCDF4/_netCDF4.pyx -> build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/netCDF4 creating build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/netCDF4/plugins copying src/netCDF4/plugins/empty.txt -> build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/netCDF4/plugins running build_ext cythoning src/netCDF4/_netCDF4.pyx to src/netCDF4/_netCDF4.c building 'netCDF4._netCDF4' extension creating build/temp.freebsd-13.2-RELEASE-p10-amd64-cpython-39 creating build/temp.freebsd-13.2-RELEASE-p10-amd64-cpython-39/src creating build/temp.freebsd-13.2-RELEASE-p10-amd64-cpython-39/src/netCDF4 cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/local/include -I/usr/local/lib/python3.9/site-packages/numpy/core/include -Iinclude -I/usr/local/include/python3.9 -c src/netCDF4/_netCDF4.c -o build/temp.freebsd-13.2-RELEASE-p10-amd64-cpython-39/src/netCDF4/_netCDF4.o src/netCDF4/_netCDF4.c:5419:8: warning: passing 'const void *' to parameter of type 'void *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] free(__pyx_v_self->memory); ^~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:102:18: note: passing argument to parameter here void free(void *); ^ src/netCDF4/_netCDF4.c:10347:106: warning: passing 'char **' to parameter of type 'const char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] __pyx_v_ierr = nc_put_att_string(__pyx_v_grpid, __pyx_v_varid, __pyx_v_attname, __pyx_v_N, __pyx_v_string_ptrs); ^~~~~~~~~~~~~~~~~~~ /usr/local/include/netcdf.h:1113:44: note: passing argument to parameter 'op' here size_t len, const char **op); ^ src/netCDF4/_netCDF4.c:10844:102: warning: passing 'char **' to parameter of type 'const char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] __pyx_v_ierr = nc_put_att_string(__pyx_v_grpid, __pyx_v_varid, __pyx_v_attname, 1, (&__pyx_v_datstring)); ^~~~~~~~~~~~~~~~~~~~ /usr/local/include/netcdf.h:1113:44: note: passing argument to parameter 'op' here size_t len, const char **op); ^ src/netCDF4/_netCDF4.c:70372:35: warning: comparison of integers of different signs: 'int' and 'size_t' (aka 'unsigned long') [-Wsign-compare] for (__pyx_v_nf = 0; __pyx_v_nf < __pyx_t_6; __pyx_v_nf++) { ~~~~~~~~~~ ^ ~~~~~~~~~ src/netCDF4/_netCDF4.c:74421:39: warning: comparison of integers of different signs: 'int' and 'size_t' (aka 'unsigned long') [-Wsign-compare] for (__pyx_v_nmem = 0; __pyx_v_nmem < __pyx_t_11; __pyx_v_nmem++) { ~~~~~~~~~~~~ ^ ~~~~~~~~~~ src/netCDF4/_netCDF4.c:100148:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] CYTHON_FALLTHROUGH; ^ src/netCDF4/_netCDF4.c:345:34: note: expanded from macro 'CYTHON_FALLTHROUGH' #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) ^ src/netCDF4/_netCDF4.c:100159:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] CYTHON_FALLTHROUGH; ^ src/netCDF4/_netCDF4.c:345:34: note: expanded from macro 'CYTHON_FALLTHROUGH' #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) ^ src/netCDF4/_netCDF4.c:100670:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] CYTHON_FALLTHROUGH; ^ src/netCDF4/_netCDF4.c:345:34: note: expanded from macro 'CYTHON_FALLTHROUGH' #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) ^ src/netCDF4/_netCDF4.c:100681:21: warning: fallthrough annotation in unreachable code [-Wunreachable-code-fallthrough] CYTHON_FALLTHROUGH; ^ src/netCDF4/_netCDF4.c:345:34: note: expanded from macro 'CYTHON_FALLTHROUGH' #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) ^ 9 warnings generated. cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.2-RELEASE-p10-amd64-cpython-39/src/netCDF4/_netCDF4.o -L/usr/local/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib -lnetcdf -o build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/netCDF4/_netCDF4.cpython-39.so =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-netCDF4-1.6.5 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> py39-netCDF4-1.6.5 depends on package: py39-cftime>=0 - not found ===> Installing existing package /packages/All/py39-cftime-1.6.3.pkg [pkg-builder.dan.net.uk] Installing py39-cftime-1.6.3... [pkg-builder.dan.net.uk] Extracting py39-cftime-1.6.3: .......... done ===> py39-netCDF4-1.6.5 depends on package: py39-cftime>=0 - found ===> Returning to build of py39-netCDF4-1.6.5 ===> py39-netCDF4-1.6.5 depends on executable: cython-3.9 - found ===> py39-netCDF4-1.6.5 depends on package: py39-setuptools>=63.1.0 - found ===> py39-netCDF4-1.6.5 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py39-netCDF4-1.6.5 ===> Generating temporary packing list /usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) reading from setup.cfg... using /usr/local/bin/nc-config... checking /usr/local/include ... HDF5 library version: 1.12.2 headers found in /usr/local/include using netcdf library version b'4.9.2' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib has nc_create_mem function netcdf lib has cdf-5 format capability netcdf lib does not have netcdf4 parallel functions netcdf lib does not have pnetcdf parallel functions netcdf lib has bit-grooming/quantization functions netcdf lib has zstandard compression functions netcdf lib has bzip2 compression functions netcdf lib has blosc compression functions netcdf lib does not have szip compression functions netcdf lib has nc_set_alignment function netcdf lib has nc_inq_filter_avail function netcdf lib has nc_rc_set function NETCDF_PLUGIN_DIR not set, no netcdf compression plugins installed running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing src/netCDF4.egg-info/PKG-INFO writing dependency_links to src/netCDF4.egg-info/dependency_links.txt writing entry points to src/netCDF4.egg-info/entry_points.txt writing requirements to src/netCDF4.egg-info/requires.txt writing top-level names to src/netCDF4.egg-info/top_level.txt reading manifest file 'src/netCDF4.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'examples/data' warning: no previously-included files found matching 'src/netCDF4/_netCDF4.c' adding license file 'LICENSE' writing manifest file 'src/netCDF4.egg-info/SOURCES.txt' running build_ext cythoning src/netCDF4/_netCDF4.pyx to src/netCDF4/_netCDF4.c running install_lib creating /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9 creating /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9/site-packages creating /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9/site-packages/netCDF4 creating /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9/site-packages/netCDF4/plugins copying build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/netCDF4/plugins/empty.txt -> /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9/site-packages/netCDF4/plugins copying build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/netCDF4/__init__.py -> /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9/site-packages/netCDF4 copying build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/netCDF4/_netCDF4.pyx -> /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9/site-packages/netCDF4 copying build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/netCDF4/utils.py -> /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9/site-packages/netCDF4 copying build/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/netCDF4/_netCDF4.cpython-39.so -> /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9/site-packages/netCDF4 byte-compiling /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9/site-packages/netCDF4/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9/site-packages/netCDF4/utils.py to utils.cpython-39.pyc writing byte-compilation script '/tmp/tmp1d4z_6jn.py' /usr/local/bin/python3.9 /tmp/tmp1d4z_6jn.py removing /tmp/tmp1d4z_6jn.py running install_egg_info Copying src/netCDF4.egg-info to /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9/site-packages/netCDF4-1.6.5-py3.9.egg-info running install_scripts Installing nc3tonc4 script to /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/bin Installing nc4tonc3 script to /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/bin Installing ncinfo script to /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/bin writing list of installed files to '/wrkdirs/usr/ports/science/py-netCDF4/work-py39/.PLIST.pymodtmp' /usr/bin/strip /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4*.so (cd /wrkdirs/usr/ports/science/py-netCDF4/work-py39/netcdf4-python-1.6.5rel/docs && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/share/doc/py39-netCDF4) (cd /wrkdirs/usr/ports/science/py-netCDF4/work-py39/netcdf4-python-1.6.5rel/examples && install -m 0644 * /wrkdirs/usr/ports/science/py-netCDF4/work-py39/stage/usr/local/share/examples/py39-netCDF4) ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/nc3tonc4 --> bin/nc3tonc4-3.9 Link: @bin/nc3tonc4 --> bin/nc3tonc4-3.9 Move: bin/nc4tonc3 --> bin/nc4tonc3-3.9 Link: @bin/nc4tonc3 --> bin/nc4tonc3-3.9 Move: bin/ncinfo --> bin/ncinfo-3.9 Link: @bin/ncinfo --> bin/ncinfo-3.9 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-03-27T19:31:43+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=07abd63525' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py39-netCDF4-1.6.5 ===> Building py39-netCDF4-1.6.5 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py39-netCDF4-1.6.5 build of science/py-netCDF4@py39 | py39-netCDF4-1.6.5 ended at Wed Mar 27 19:33:21 GMT 2024 build time: 00:01:39