=>> Building science/py-moltemplate build started at Mon Apr 1 20:18:42 BST 2024 port directory: /usr/ports/science/py-moltemplate package name: py39-moltemplate-2.20.21 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1418 Feb 14 06:15 /usr/ports/science/py-moltemplate/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: 6533b7ea4f Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 03 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/03/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-moltemplate/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-moltemplate/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-moltemplate/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-moltemplate/work-py39 TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/py-moltemplate/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-moltemplate/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCACHE_DIR="/root/.ccache" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-moltemplate/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-moltemplate/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-moltemplate/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-moltemplate/work-py39 TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/py-moltemplate/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-moltemplate/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py39-moltemplate" EXAMPLESDIR="share/examples/py39-moltemplate" DATADIR="share/py39-moltemplate" WWWDIR="www/py39-moltemplate" ETCDIR="etc/py39-moltemplate" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-moltemplate DOCSDIR=/usr/local/share/doc/py39-moltemplate EXAMPLESDIR=/usr/local/share/examples/py39-moltemplate WWWDIR=/usr/local/www/py39-moltemplate ETCDIR=/usr/local/etc/py39-moltemplate --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-moltemplate-2.20.21 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> py39-moltemplate-2.20.21 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-moltemplate-2.20.21 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-moltemplate-2.20.21 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-moltemplate-2.20.21 for building => SHA256 Checksum OK for jewettaij-moltemplate-v2.20.21_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-moltemplate-2.20.21 for building ===> Extracting for py39-moltemplate-2.20.21 => SHA256 Checksum OK for jewettaij-moltemplate-v2.20.21_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-moltemplate-2.20.21 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-moltemplate-2.20.21 depends on package: py39-pytest-runner>0 - not found ===> Installing existing package /packages/All/py39-pytest-runner-6.0.1.pkg [pkg-builder.dan.net.uk] Installing py39-pytest-runner-6.0.1... [pkg-builder.dan.net.uk] `-- Installing python39-3.9.18_1... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.4_1... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.4_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-2.5.1... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-2.5.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing openssl-3.0.13_1,1... [pkg-builder.dan.net.uk] | `-- Extracting openssl-3.0.13_1,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.10... [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.10: .......... done [pkg-builder.dan.net.uk] `-- Extracting python39-3.9.18_1: .......... done [pkg-builder.dan.net.uk] Extracting py39-pytest-runner-6.0.1: ......... done ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===== Message from py39-pytest-runner-6.0.1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: pytest-runner depends on deprecated features of setuptools. It is scheduled to be removed on or after 2024-12-31. ===> py39-moltemplate-2.20.21 depends on package: py39-pytest-runner>0 - found ===> Returning to build of py39-moltemplate-2.20.21 ===> py39-moltemplate-2.20.21 depends on package: py39-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py39-setuptools-63.1.0_1.pkg [pkg-builder.dan.net.uk] Installing py39-setuptools-63.1.0_1... [pkg-builder.dan.net.uk] Extracting py39-setuptools-63.1.0_1: .......... done ===> py39-moltemplate-2.20.21 depends on package: py39-setuptools>=63.1.0 - found ===> Returning to build of py39-moltemplate-2.20.21 ===> py39-moltemplate-2.20.21 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py39-moltemplate-2.20.21 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py39-moltemplate-2.20.21 running build running build_py creating build creating build/lib creating build/lib/moltemplate copying moltemplate/nbody_Dihedrals.py -> build/lib/moltemplate copying moltemplate/lttree_postprocess.py -> build/lib/moltemplate copying moltemplate/postprocess_transitions.py -> build/lib/moltemplate copying moltemplate/nbody_fix_ttree_assignments.py -> build/lib/moltemplate copying moltemplate/dump2data.py -> build/lib/moltemplate copying moltemplate/__init__.py -> build/lib/moltemplate copying moltemplate/ltemplify.py -> build/lib/moltemplate copying moltemplate/nbody_Angles.py -> build/lib/moltemplate copying moltemplate/postprocess_coeffs.py -> build/lib/moltemplate copying moltemplate/nbody_by_type.py -> build/lib/moltemplate copying moltemplate/renumber_DATA_first_column.py -> build/lib/moltemplate copying moltemplate/nbody_graph_search.py -> build/lib/moltemplate copying moltemplate/remove_duplicate_atoms.py -> build/lib/moltemplate copying moltemplate/mol22lt.py -> build/lib/moltemplate copying moltemplate/bonds_by_type.py -> build/lib/moltemplate copying moltemplate/lttree_styles.py -> build/lib/moltemplate copying moltemplate/nbody_Bonds.py -> build/lib/moltemplate copying moltemplate/ttree_matrix_stack.py -> build/lib/moltemplate copying moltemplate/ttree_lex.py -> build/lib/moltemplate copying moltemplate/nbody_Impropers.py -> build/lib/moltemplate copying moltemplate/pdbsort.py -> build/lib/moltemplate copying moltemplate/lttree_check.py -> build/lib/moltemplate copying moltemplate/raw2data.py -> build/lib/moltemplate copying moltemplate/charge_by_bond.py -> build/lib/moltemplate copying moltemplate/lttree.py -> build/lib/moltemplate copying moltemplate/genpoly_modify_lt.py -> build/lib/moltemplate copying moltemplate/remove_duplicates_nbody.py -> build/lib/moltemplate copying moltemplate/amber2lt.py -> build/lib/moltemplate copying moltemplate/nbody_by_type_lib.py -> build/lib/moltemplate copying moltemplate/extract_espresso_atom_types.py -> build/lib/moltemplate copying moltemplate/ttree_render.py -> build/lib/moltemplate copying moltemplate/ordereddict.py -> build/lib/moltemplate copying moltemplate/ettree.py -> build/lib/moltemplate copying moltemplate/recenter_coords.py -> build/lib/moltemplate copying moltemplate/extract_lammps_data.py -> build/lib/moltemplate copying moltemplate/ettree_styles.py -> build/lib/moltemplate copying moltemplate/genpoly_lt.py -> build/lib/moltemplate copying moltemplate/postprocess_input_script.py -> build/lib/moltemplate copying moltemplate/ttree.py -> build/lib/moltemplate copying moltemplate/interpolate_curve.py -> build/lib/moltemplate copying moltemplate/nbody_reorder_atoms.py -> build/lib/moltemplate creating build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/cenIsortJKL.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/dihedrals_nosym.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/__init__.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/opls_imp.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/angles_nosym.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/cenJsortIKL.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/cenIswapJK.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/gaff_imp.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/cenJswapIL.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/bonds_nosym.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/impropers_nosym.py -> build/lib/moltemplate/nbody_alt_symmetry running egg_info creating moltemplate.egg-info writing moltemplate.egg-info/PKG-INFO writing dependency_links to moltemplate.egg-info/dependency_links.txt writing entry points to moltemplate.egg-info/entry_points.txt writing requirements to moltemplate.egg-info/requires.txt writing top-level names to moltemplate.egg-info/top_level.txt writing manifest file 'moltemplate.egg-info/SOURCES.txt' reading manifest file 'moltemplate.egg-info/SOURCES.txt' adding license file 'LICENSE.md' writing manifest file 'moltemplate.egg-info/SOURCES.txt' /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'moltemplate.force_fields' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'moltemplate.force_fields' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'moltemplate.force_fields' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'moltemplate.force_fields' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'moltemplate.scripts' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'moltemplate.scripts' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'moltemplate.scripts' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'moltemplate.scripts' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating build/lib/moltemplate/force_fields copying moltemplate/force_fields/compass_published.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/cooke_deserno_lipid.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/dreiding.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/drymartini.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/gaff.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/gaff2.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/graphene.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/graphene_rectangular.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/graphite.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/loplsaa.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/martini.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/oplsaa.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/sdk.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/spc_oplsaa.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/spce.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/spce_amber.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/spce_dreiding.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/spce_hybrid.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/spce_ice_rect16.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/spce_ice_rect32.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/spce_ice_rect8.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/spce_more_comments.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/spce_oplsaa.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/tip3f_1987_oplsaa.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/tip3p_1983.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/tip3p_1983_charmm.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/tip3p_1983_charmm_hybrid.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/tip3p_1983_hybrid.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/tip3p_1983_oplsaa.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/tip3p_2004.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/tip3p_2004_hybrid.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/tip5p_oplsaa.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/trappe1998.lt -> build/lib/moltemplate/force_fields copying moltemplate/force_fields/watmw.lt -> build/lib/moltemplate/force_fields creating build/lib/moltemplate/scripts copying moltemplate/scripts/cleanup_moltemplate.sh -> build/lib/moltemplate/scripts copying moltemplate/scripts/emoltemplate.sh -> build/lib/moltemplate/scripts copying moltemplate/scripts/molc.sh -> build/lib/moltemplate/scripts copying moltemplate/scripts/moltemplate.sh -> build/lib/moltemplate/scripts copying moltemplate/scripts/pdb2crds.awk -> build/lib/moltemplate/scripts running build_scripts creating build/scripts-3.9 copying moltemplate/scripts/moltemplate.sh -> build/scripts-3.9 copying moltemplate/scripts/cleanup_moltemplate.sh -> build/scripts-3.9 copying moltemplate/scripts/molc.sh -> build/scripts-3.9 copying moltemplate/scripts/pdb2crds.awk -> build/scripts-3.9 copying moltemplate/scripts/emoltemplate.sh -> build/scripts-3.9 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-moltemplate-2.20.21 depends on package: py39-numpy>=1.16,1<1.26,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg [pkg-builder.dan.net.uk] Installing py39-numpy-1.25.0_6,1... [pkg-builder.dan.net.uk] `-- Installing gcc13-13.2.0_4... [pkg-builder.dan.net.uk] | `-- Installing binutils-2.40_5,1... [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.5_1... [pkg-builder.dan.net.uk] | | `-- Installing liblz4-1.9.4_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting liblz4-1.9.4_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.5_1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting binutils-2.40_5,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | `-- Installing mpfr-4.2.1,1... [pkg-builder.dan.net.uk] | | `-- Extracting mpfr-4.2.1,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] `-- Extracting gcc13-13.2.0_4: .......... done create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) [pkg-builder.dan.net.uk] `-- Installing openblas-0.3.25,2... [pkg-builder.dan.net.uk] `-- Extracting openblas-0.3.25,2: .......... done [pkg-builder.dan.net.uk] `-- Installing suitesparse-umfpack-6.3.2... [pkg-builder.dan.net.uk] | `-- Installing suitesparse-amd-3.3.1... [pkg-builder.dan.net.uk] | | `-- Installing suitesparse-config-7.6.1... [pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-config-7.6.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-amd-3.3.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-camd-3.3.1... [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-camd-3.3.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-ccolamd-3.3.2... [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-ccolamd-3.3.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-cholmod-5.2.0... [pkg-builder.dan.net.uk] | | `-- Installing suitesparse-colamd-3.3.2... [pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-colamd-3.3.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-cholmod-5.2.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting suitesparse-umfpack-6.3.2: .......... done [pkg-builder.dan.net.uk] Extracting py39-numpy-1.25.0_6,1: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py39-moltemplate-2.20.21 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> Returning to build of py39-moltemplate-2.20.21 ===> py39-moltemplate-2.20.21 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.2.26_1.pkg [pkg-builder.dan.net.uk] Installing bash-5.2.26_1... [pkg-builder.dan.net.uk] Extracting bash-5.2.26_1: .......... done ===> py39-moltemplate-2.20.21 depends on executable: bash - found ===> Returning to build of py39-moltemplate-2.20.21 ===> py39-moltemplate-2.20.21 depends on package: py39-setuptools>=63.1.0 - found ===> py39-moltemplate-2.20.21 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py39-moltemplate-2.20.21 ===> Generating temporary packing list running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing moltemplate.egg-info/PKG-INFO writing dependency_links to moltemplate.egg-info/dependency_links.txt writing entry points to moltemplate.egg-info/entry_points.txt writing requirements to moltemplate.egg-info/requires.txt writing top-level names to moltemplate.egg-info/top_level.txt reading manifest file 'moltemplate.egg-info/SOURCES.txt' adding license file 'LICENSE.md' writing manifest file 'moltemplate.egg-info/SOURCES.txt' /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'moltemplate.force_fields' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'moltemplate.force_fields' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'moltemplate.force_fields' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'moltemplate.force_fields' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'moltemplate.scripts' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'moltemplate.scripts' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'moltemplate.scripts' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'moltemplate.scripts' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running build_scripts running install_lib creating /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9 creating /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages creating /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/nbody_Dihedrals.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/lttree_postprocess.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/postprocess_transitions.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/nbody_fix_ttree_assignments.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/dump2data.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/__init__.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/ltemplify.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/nbody_Angles.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/postprocess_coeffs.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/nbody_by_type.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/renumber_DATA_first_column.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/nbody_graph_search.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/remove_duplicate_atoms.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/mol22lt.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/bonds_by_type.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/lttree_styles.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/nbody_Bonds.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/ttree_matrix_stack.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/ttree_lex.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate creating /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/dreiding.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/trappe1998.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/tip5p_oplsaa.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/gaff.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/tip3p_2004_hybrid.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/drymartini.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/spce_ice_rect16.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/compass_published.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/cooke_deserno_lipid.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/loplsaa.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/tip3f_1987_oplsaa.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/gaff2.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/spce_more_comments.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/spce_ice_rect32.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/tip3p_1983_charmm_hybrid.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/graphite.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/oplsaa.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/sdk.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/spce_dreiding.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/spce_oplsaa.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/martini.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/watmw.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/spce_hybrid.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/tip3p_2004.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/tip3p_1983_hybrid.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/spc_oplsaa.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/tip3p_1983_charmm.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/graphene_rectangular.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/tip3p_1983.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/spce_ice_rect8.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/graphene.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/tip3p_1983_oplsaa.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/spce_amber.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/force_fields/spce.lt -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/force_fields copying build/lib/moltemplate/nbody_Impropers.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/pdbsort.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/lttree_check.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/raw2data.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/charge_by_bond.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/lttree.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/genpoly_modify_lt.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/remove_duplicates_nbody.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/amber2lt.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/nbody_by_type_lib.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/extract_espresso_atom_types.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/ttree_render.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/ordereddict.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate creating /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/cenIsortJKL.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/dihedrals_nosym.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/__init__.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/opls_imp.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/angles_nosym.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/cenJsortIKL.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/cenIswapJK.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/gaff_imp.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/cenJswapIL.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/bonds_nosym.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/impropers_nosym.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/ettree.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/recenter_coords.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/extract_lammps_data.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/ettree_styles.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/genpoly_lt.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate creating /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/scripts copying build/lib/moltemplate/scripts/moltemplate.sh -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/scripts copying build/lib/moltemplate/scripts/emoltemplate.sh -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/scripts copying build/lib/moltemplate/scripts/pdb2crds.awk -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/scripts copying build/lib/moltemplate/scripts/cleanup_moltemplate.sh -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/scripts copying build/lib/moltemplate/scripts/molc.sh -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/scripts copying build/lib/moltemplate/postprocess_input_script.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/ttree.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/interpolate_curve.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate copying build/lib/moltemplate/nbody_reorder_atoms.py -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_Dihedrals.py to nbody_Dihedrals.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/lttree_postprocess.py to lttree_postprocess.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/postprocess_transitions.py to postprocess_transitions.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_fix_ttree_assignments.py to nbody_fix_ttree_assignments.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/dump2data.py to dump2data.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/ltemplify.py to ltemplify.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_Angles.py to nbody_Angles.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/postprocess_coeffs.py to postprocess_coeffs.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_by_type.py to nbody_by_type.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/renumber_DATA_first_column.py to renumber_DATA_first_column.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_graph_search.py to nbody_graph_search.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/remove_duplicate_atoms.py to remove_duplicate_atoms.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/mol22lt.py to mol22lt.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/bonds_by_type.py to bonds_by_type.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/lttree_styles.py to lttree_styles.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_Bonds.py to nbody_Bonds.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/ttree_matrix_stack.py to ttree_matrix_stack.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/ttree_lex.py to ttree_lex.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_Impropers.py to nbody_Impropers.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/pdbsort.py to pdbsort.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/lttree_check.py to lttree_check.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/raw2data.py to raw2data.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/charge_by_bond.py to charge_by_bond.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/lttree.py to lttree.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/genpoly_modify_lt.py to genpoly_modify_lt.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/remove_duplicates_nbody.py to remove_duplicates_nbody.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/amber2lt.py to amber2lt.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_by_type_lib.py to nbody_by_type_lib.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/extract_espresso_atom_types.py to extract_espresso_atom_types.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/ttree_render.py to ttree_render.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/ordereddict.py to ordereddict.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry/cenIsortJKL.py to cenIsortJKL.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry/dihedrals_nosym.py to dihedrals_nosym.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry/opls_imp.py to opls_imp.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry/angles_nosym.py to angles_nosym.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry/cenJsortIKL.py to cenJsortIKL.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry/cenIswapJK.py to cenIswapJK.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry/gaff_imp.py to gaff_imp.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry/cenJswapIL.py to cenJswapIL.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry/bonds_nosym.py to bonds_nosym.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_alt_symmetry/impropers_nosym.py to impropers_nosym.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/ettree.py to ettree.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/recenter_coords.py to recenter_coords.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/extract_lammps_data.py to extract_lammps_data.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/ettree_styles.py to ettree_styles.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/genpoly_lt.py to genpoly_lt.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/postprocess_input_script.py to postprocess_input_script.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/ttree.py to ttree.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/interpolate_curve.py to interpolate_curve.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate/nbody_reorder_atoms.py to nbody_reorder_atoms.cpython-39.pyc writing byte-compilation script '/tmp/tmpa9n2vx1g.py' /usr/local/bin/python3.9 /tmp/tmpa9n2vx1g.py removing /tmp/tmpa9n2vx1g.py running install_egg_info Copying moltemplate.egg-info to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/lib/python3.9/site-packages/moltemplate-2.20.20-py3.9.egg-info running install_scripts copying build/scripts-3.9/moltemplate.sh -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin copying build/scripts-3.9/emoltemplate.sh -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin copying build/scripts-3.9/pdb2crds.awk -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin copying build/scripts-3.9/cleanup_moltemplate.sh -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin copying build/scripts-3.9/molc.sh -> /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin changing mode of /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin/moltemplate.sh to 755 changing mode of /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin/emoltemplate.sh to 755 changing mode of /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin/pdb2crds.awk to 755 changing mode of /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin/cleanup_moltemplate.sh to 755 changing mode of /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin/molc.sh to 755 Installing bonds_by_type.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing charge_by_bond.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing dump2data.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing ettree.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing extract_espresso_atom_types.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing extract_lammps_data.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing genpoly_lt.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing genpoly_modify_lt.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing interpolate_curve.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing ltemplify.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing lttree.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing lttree_check.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing lttree_postprocess.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing mol22lt.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing nbody_by_type.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing nbody_fix_ttree_assignments.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing nbody_reorder_atoms.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing pdbsort.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing postprocess_coeffs.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing postprocess_input_script.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing raw2data.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing recenter_coords.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing remove_duplicate_atoms.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing remove_duplicates_nbody.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing renumber_DATA_first_column.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing ttree.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin Installing ttree_render.py script to /wrkdirs/usr/ports/science/py-moltemplate/work-py39/stage/usr/local/bin writing list of installed files to '/wrkdirs/usr/ports/science/py-moltemplate/work-py39/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/moltemplate.sh --> bin/moltemplate.sh-3.9 Link: @bin/moltemplate.sh --> bin/moltemplate.sh-3.9 Move: bin/emoltemplate.sh --> bin/emoltemplate.sh-3.9 Link: @bin/emoltemplate.sh --> bin/emoltemplate.sh-3.9 Move: bin/pdb2crds.awk --> bin/pdb2crds.awk-3.9 Link: @bin/pdb2crds.awk --> bin/pdb2crds.awk-3.9 Move: bin/cleanup_moltemplate.sh --> bin/cleanup_moltemplate.sh-3.9 Link: @bin/cleanup_moltemplate.sh --> bin/cleanup_moltemplate.sh-3.9 Move: bin/molc.sh --> bin/molc.sh-3.9 Link: @bin/molc.sh --> bin/molc.sh-3.9 Move: bin/bonds_by_type.py --> bin/bonds_by_type.py-3.9 Link: @bin/bonds_by_type.py --> bin/bonds_by_type.py-3.9 Move: bin/charge_by_bond.py --> bin/charge_by_bond.py-3.9 Link: @bin/charge_by_bond.py --> bin/charge_by_bond.py-3.9 Move: bin/dump2data.py --> bin/dump2data.py-3.9 Link: @bin/dump2data.py --> bin/dump2data.py-3.9 Move: bin/ettree.py --> bin/ettree.py-3.9 Link: @bin/ettree.py --> bin/ettree.py-3.9 Move: bin/extract_espresso_atom_types.py --> bin/extract_espresso_atom_types.py-3.9 Link: @bin/extract_espresso_atom_types.py --> bin/extract_espresso_atom_types.py-3.9 Move: bin/extract_lammps_data.py --> bin/extract_lammps_data.py-3.9 Link: @bin/extract_lammps_data.py --> bin/extract_lammps_data.py-3.9 Move: bin/genpoly_lt.py --> bin/genpoly_lt.py-3.9 Link: @bin/genpoly_lt.py --> bin/genpoly_lt.py-3.9 Move: bin/genpoly_modify_lt.py --> bin/genpoly_modify_lt.py-3.9 Link: @bin/genpoly_modify_lt.py --> bin/genpoly_modify_lt.py-3.9 Move: bin/interpolate_curve.py --> bin/interpolate_curve.py-3.9 Link: @bin/interpolate_curve.py --> bin/interpolate_curve.py-3.9 Move: bin/ltemplify.py --> bin/ltemplify.py-3.9 Link: @bin/ltemplify.py --> bin/ltemplify.py-3.9 Move: bin/lttree.py --> bin/lttree.py-3.9 Link: @bin/lttree.py --> bin/lttree.py-3.9 Move: bin/lttree_check.py --> bin/lttree_check.py-3.9 Link: @bin/lttree_check.py --> bin/lttree_check.py-3.9 Move: bin/lttree_postprocess.py --> bin/lttree_postprocess.py-3.9 Link: @bin/lttree_postprocess.py --> bin/lttree_postprocess.py-3.9 Move: bin/mol22lt.py --> bin/mol22lt.py-3.9 Link: @bin/mol22lt.py --> bin/mol22lt.py-3.9 Move: bin/nbody_by_type.py --> bin/nbody_by_type.py-3.9 Link: @bin/nbody_by_type.py --> bin/nbody_by_type.py-3.9 Move: bin/nbody_fix_ttree_assignments.py --> bin/nbody_fix_ttree_assignments.py-3.9 Link: @bin/nbody_fix_ttree_assignments.py --> bin/nbody_fix_ttree_assignments.py-3.9 Move: bin/nbody_reorder_atoms.py --> bin/nbody_reorder_atoms.py-3.9 Link: @bin/nbody_reorder_atoms.py --> bin/nbody_reorder_atoms.py-3.9 Move: bin/pdbsort.py --> bin/pdbsort.py-3.9 Link: @bin/pdbsort.py --> bin/pdbsort.py-3.9 Move: bin/postprocess_coeffs.py --> bin/postprocess_coeffs.py-3.9 Link: @bin/postprocess_coeffs.py --> bin/postprocess_coeffs.py-3.9 Move: bin/postprocess_input_script.py --> bin/postprocess_input_script.py-3.9 Link: @bin/postprocess_input_script.py --> bin/postprocess_input_script.py-3.9 Move: bin/raw2data.py --> bin/raw2data.py-3.9 Link: @bin/raw2data.py --> bin/raw2data.py-3.9 Move: bin/recenter_coords.py --> bin/recenter_coords.py-3.9 Link: @bin/recenter_coords.py --> bin/recenter_coords.py-3.9 Move: bin/remove_duplicate_atoms.py --> bin/remove_duplicate_atoms.py-3.9 Link: @bin/remove_duplicate_atoms.py --> bin/remove_duplicate_atoms.py-3.9 Move: bin/remove_duplicates_nbody.py --> bin/remove_duplicates_nbody.py-3.9 Link: @bin/remove_duplicates_nbody.py --> bin/remove_duplicates_nbody.py-3.9 Move: bin/renumber_DATA_first_column.py --> bin/renumber_DATA_first_column.py-3.9 Link: @bin/renumber_DATA_first_column.py --> bin/renumber_DATA_first_column.py-3.9 Move: bin/ttree.py --> bin/ttree.py-3.9 Link: @bin/ttree.py --> bin/ttree.py-3.9 Move: bin/ttree_render.py --> bin/ttree_render.py-3.9 Link: @bin/ttree_render.py --> bin/ttree_render.py-3.9 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-04-01T19:18:42+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=6533b7ea4f' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py39-moltemplate-2.20.21 ===> Building py39-moltemplate-2.20.21 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py39-moltemplate-2.20.21 build of science/py-moltemplate@py39 | py39-moltemplate-2.20.21 ended at Mon Apr 1 20:19:12 BST 2024 build time: 00:00:32