=>> Building biology/py-PySCeS build started at Thu Apr 4 10:25:59 BST 2024 port directory: /usr/ports/biology/py-PySCeS package name: py39-PySCeS-1.1.1 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1403 Dec 19 14:17 /usr/ports/biology/py-PySCeS/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: 6adf2325e9 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 09 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/09/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CCACHE_DIR="/root/.ccache" --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lpython3.9 -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/PySCeS" EXAMPLESDIR="share/examples/PySCeS" DATADIR="share/PySCeS" WWWDIR="www/PySCeS" ETCDIR="etc/PySCeS" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/PySCeS DOCSDIR=/usr/local/share/doc/PySCeS EXAMPLESDIR=/usr/local/share/examples/PySCeS WWWDIR=/usr/local/www/PySCeS ETCDIR=/usr/local/etc/PySCeS --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-PySCeS-1.1.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> py39-PySCeS-1.1.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-PySCeS-1.1.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-PySCeS-1.1.1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-PySCeS-1.1.1 for building => SHA256 Checksum OK for pysces-1.1.1.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-PySCeS-1.1.1 for building ===> Extracting for py39-PySCeS-1.1.1 => SHA256 Checksum OK for pysces-1.1.1.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-PySCeS-1.1.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-PySCeS-1.1.1 depends on package: py39-scikit-build>0 - not found ===> Installing existing package /packages/All/py39-scikit-build-0.16.7_1.pkg [pkg-builder.dan.net.uk] Installing py39-scikit-build-0.16.7_1... [pkg-builder.dan.net.uk] `-- Installing py39-distro-1.9.0... [pkg-builder.dan.net.uk] | `-- Installing python39-3.9.18_1... [pkg-builder.dan.net.uk] | | `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] | | `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libffi-3.4.4_1... [pkg-builder.dan.net.uk] | | `-- Extracting libffi-3.4.4_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing mpdecimal-2.5.1... [pkg-builder.dan.net.uk] | | `-- Extracting mpdecimal-2.5.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing openssl-3.0.13_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting openssl-3.0.13_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing readline-8.2.10... [pkg-builder.dan.net.uk] | | `-- Extracting readline-8.2.10: .......... done [pkg-builder.dan.net.uk] | `-- Extracting python39-3.9.18_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-distro-1.9.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-packaging-23.2... [pkg-builder.dan.net.uk] `-- Extracting py39-packaging-23.2: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-wheel-0.43.0... [pkg-builder.dan.net.uk] `-- Extracting py39-wheel-0.43.0: .......... done [pkg-builder.dan.net.uk] Extracting py39-scikit-build-0.16.7_1: .......... done ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> py39-PySCeS-1.1.1 depends on package: py39-scikit-build>0 - found ===> Returning to build of py39-PySCeS-1.1.1 ===> py39-PySCeS-1.1.1 depends on executable: cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.3.pkg [pkg-builder.dan.net.uk] Installing cmake-core-3.28.3... [pkg-builder.dan.net.uk] `-- Installing expat-2.6.1... [pkg-builder.dan.net.uk] `-- Extracting expat-2.6.1: .......... done [pkg-builder.dan.net.uk] `-- Installing jsoncpp-1.9.5... [pkg-builder.dan.net.uk] `-- Extracting jsoncpp-1.9.5: .......... done [pkg-builder.dan.net.uk] `-- Installing libuv-1.48.0... [pkg-builder.dan.net.uk] `-- Extracting libuv-1.48.0: .......... done [pkg-builder.dan.net.uk] `-- Installing rhash-1.4.4_1... [pkg-builder.dan.net.uk] `-- Extracting rhash-1.4.4_1: .......... done [pkg-builder.dan.net.uk] Extracting cmake-core-3.28.3: .......... done ===> py39-PySCeS-1.1.1 depends on executable: cmake - found ===> Returning to build of py39-PySCeS-1.1.1 ===> py39-PySCeS-1.1.1 depends on package: py39-numpy>=1.16,1<1.26,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg [pkg-builder.dan.net.uk] Installing py39-numpy-1.25.0_6,1... [pkg-builder.dan.net.uk] `-- Installing gcc13-13.2.0_4... [pkg-builder.dan.net.uk] | `-- Installing binutils-2.40_5,1... [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.5_1... [pkg-builder.dan.net.uk] | | `-- Installing liblz4-1.9.4_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting liblz4-1.9.4_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.5_1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting binutils-2.40_5,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | `-- Installing mpfr-4.2.1,1... [pkg-builder.dan.net.uk] | | `-- Extracting mpfr-4.2.1,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] `-- Extracting gcc13-13.2.0_4: .......... done create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) [pkg-builder.dan.net.uk] `-- Installing openblas-0.3.25,2... [pkg-builder.dan.net.uk] `-- Extracting openblas-0.3.25,2: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-setuptools-63.1.0_1... [pkg-builder.dan.net.uk] `-- Extracting py39-setuptools-63.1.0_1: .......... done [pkg-builder.dan.net.uk] `-- Installing suitesparse-umfpack-6.3.2... [pkg-builder.dan.net.uk] | `-- Installing suitesparse-amd-3.3.1... [pkg-builder.dan.net.uk] | | `-- Installing suitesparse-config-7.6.1... [pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-config-7.6.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-amd-3.3.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-camd-3.3.1... [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-camd-3.3.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-ccolamd-3.3.2... [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-ccolamd-3.3.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing suitesparse-cholmod-5.2.0... [pkg-builder.dan.net.uk] | | `-- Installing suitesparse-colamd-3.3.2... [pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-colamd-3.3.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-cholmod-5.2.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting suitesparse-umfpack-6.3.2: .......... done [pkg-builder.dan.net.uk] Extracting py39-numpy-1.25.0_6,1: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py39-PySCeS-1.1.1 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> Returning to build of py39-PySCeS-1.1.1 ===> py39-PySCeS-1.1.1 depends on package: py39-matplotlib>0 - not found ===> Installing existing package /packages/All/py39-matplotlib-3.8.0.pkg [pkg-builder.dan.net.uk] Installing py39-matplotlib-3.8.0... [pkg-builder.dan.net.uk] `-- Installing fontconfig-2.15.0_2,1... [pkg-builder.dan.net.uk] | `-- Installing freetype2-2.13.2... [pkg-builder.dan.net.uk] | `-- Extracting freetype2-2.13.2: .......... done [pkg-builder.dan.net.uk] `-- Extracting fontconfig-2.15.0_2,1: .......... done [pkg-builder.dan.net.uk] `-- Installing png-1.6.43... [pkg-builder.dan.net.uk] `-- Extracting png-1.6.43: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-certifi-2024.2.2... [pkg-builder.dan.net.uk] `-- Extracting py39-certifi-2024.2.2: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-contourpy-1.2.0... [pkg-builder.dan.net.uk] `-- Extracting py39-contourpy-1.2.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-cycler-0.12.1... [pkg-builder.dan.net.uk] `-- Extracting py39-cycler-0.12.1: ......... done [pkg-builder.dan.net.uk] `-- Installing py39-dateutil-2.9.0... [pkg-builder.dan.net.uk] | `-- Installing py39-six-1.16.0... [pkg-builder.dan.net.uk] | `-- Extracting py39-six-1.16.0: ....... done [pkg-builder.dan.net.uk] `-- Extracting py39-dateutil-2.9.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-fonttools-4.49.0... [pkg-builder.dan.net.uk] | `-- Installing py39-fs2-2.4.16... [pkg-builder.dan.net.uk] | | `-- Installing py39-appdirs-1.4.4... [pkg-builder.dan.net.uk] | | `-- Extracting py39-appdirs-1.4.4: ....... done [pkg-builder.dan.net.uk] | | `-- Installing py39-pytz-2024.1,1... [pkg-builder.dan.net.uk] | | `-- Extracting py39-pytz-2024.1,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-fs2-2.4.16: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-lxml-4.9.3... [pkg-builder.dan.net.uk] | | `-- Installing libxml2-2.11.7... [pkg-builder.dan.net.uk] | | `-- Extracting libxml2-2.11.7: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libxslt-1.1.37_1... [pkg-builder.dan.net.uk] | | `-- Installing libgcrypt-1.10.3_1... [pkg-builder.dan.net.uk] | | | `-- Installing libgpg-error-1.48... [pkg-builder.dan.net.uk] | | | `-- Extracting libgpg-error-1.48: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libgcrypt-1.10.3_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libxslt-1.1.37_1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-lxml-4.9.3: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-unicodedata2-15.1.0... [pkg-builder.dan.net.uk] | `-- Extracting py39-unicodedata2-15.1.0: ...... done [pkg-builder.dan.net.uk] `-- Extracting py39-fonttools-4.49.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-importlib-resources-6.3.0... [pkg-builder.dan.net.uk] | `-- Installing py39-zipp-3.18.1... [pkg-builder.dan.net.uk] | `-- Extracting py39-zipp-3.18.1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-importlib-resources-6.3.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-kiwisolver-1.4.5,1... [pkg-builder.dan.net.uk] `-- Extracting py39-kiwisolver-1.4.5,1: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-pillow-10.2.0... [pkg-builder.dan.net.uk] | `-- Installing jpeg-turbo-3.0.2... [pkg-builder.dan.net.uk] | `-- Extracting jpeg-turbo-3.0.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing lcms2-2.16_1... [pkg-builder.dan.net.uk] | | `-- Installing tiff-4.4.0_3... [pkg-builder.dan.net.uk] | | `-- Installing jbigkit-2.1_2... [pkg-builder.dan.net.uk] | | `-- Extracting jbigkit-2.1_2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libdeflate-1.19... [pkg-builder.dan.net.uk] | | `-- Extracting libdeflate-1.19: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting tiff-4.4.0_3: .......... done [pkg-builder.dan.net.uk] | `-- Extracting lcms2-2.16_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libimagequant-4.3.0_1... [pkg-builder.dan.net.uk] | `-- Extracting libimagequant-4.3.0_1: ...... done [pkg-builder.dan.net.uk] | `-- Installing libraqm-0.10.1... [pkg-builder.dan.net.uk] | | `-- Installing fribidi-1.0.13_1... [pkg-builder.dan.net.uk] | | `-- Extracting fribidi-1.0.13_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing harfbuzz-8.3.0... [pkg-builder.dan.net.uk] | | `-- Installing glib-2.80.0,2... [pkg-builder.dan.net.uk] | | | `-- Installing libiconv-1.17_1... [pkg-builder.dan.net.uk] | | | `-- Extracting libiconv-1.17_1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing pcre2-10.43... [pkg-builder.dan.net.uk] | | | `-- Extracting pcre2-10.43: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting glib-2.80.0,2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing graphite2-1.3.14... [pkg-builder.dan.net.uk] | | `-- Extracting graphite2-1.3.14: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting harfbuzz-8.3.0: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libraqm-0.10.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libxcb-1.16.1... [pkg-builder.dan.net.uk] | | `-- Installing libXau-1.0.9_1... [pkg-builder.dan.net.uk] | | `-- Extracting libXau-1.0.9_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXdmcp-1.1.5... [pkg-builder.dan.net.uk] | | `-- Installing xorgproto-2023.2... [pkg-builder.dan.net.uk] | | `-- Extracting xorgproto-2023.2: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg-builder.dan.net.uk] | `-- Extracting libxcb-1.16.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing openjpeg-2.5.2... [pkg-builder.dan.net.uk] | `-- Extracting openjpeg-2.5.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-olefile-0.46... [pkg-builder.dan.net.uk] | `-- Extracting py39-olefile-0.46: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-tkinter-3.9.18_7... [pkg-builder.dan.net.uk] | | `-- Installing tcl86-8.6.14_1... [pkg-builder.dan.net.uk] | | `-- Extracting tcl86-8.6.14_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing tk86-8.6.14_1... [pkg-builder.dan.net.uk] | | `-- Installing libX11-1.8.7_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting libX11-1.8.7_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXScrnSaver-1.2.4_1... [pkg-builder.dan.net.uk] | | | `-- Installing libXext-1.3.6,1... [pkg-builder.dan.net.uk] | | | `-- Extracting libXext-1.3.6,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libXScrnSaver-1.2.4_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXft-2.3.7_1... [pkg-builder.dan.net.uk] | | | `-- Installing libXrender-0.9.10_2... [pkg-builder.dan.net.uk] | | | `-- Extracting libXrender-0.9.10_2: ....... done [pkg-builder.dan.net.uk] | | `-- Extracting libXft-2.3.7_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting tk86-8.6.14_1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-tkinter-3.9.18_7: ..... done [pkg-builder.dan.net.uk] | `-- Installing webp-1.3.2_1... [pkg-builder.dan.net.uk] | | `-- Installing freeglut-3.2.1... [pkg-builder.dan.net.uk] | | `-- Installing libGLU-9.0.2_2... [pkg-builder.dan.net.uk] | | | `-- Installing libglvnd-1.7.0... [pkg-builder.dan.net.uk] | | | `-- Extracting libglvnd-1.7.0: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libGLU-9.0.2_2: ..... done [pkg-builder.dan.net.uk] | | `-- Installing libICE-1.1.0_2,1... [pkg-builder.dan.net.uk] | | `-- Extracting libICE-1.1.0_2,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXi-1.8_1,1... [pkg-builder.dan.net.uk] | | | `-- Installing libXfixes-6.0.0_1... [pkg-builder.dan.net.uk] | | | `-- Extracting libXfixes-6.0.0_1: ....... done [pkg-builder.dan.net.uk] | | `-- Extracting libXi-1.8_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXrandr-1.5.2_1... [pkg-builder.dan.net.uk] | | `-- Extracting libXrandr-1.5.2_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libXxf86vm-1.1.4_4... [pkg-builder.dan.net.uk] | | `-- Extracting libXxf86vm-1.1.4_4: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting freeglut-3.2.1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing giflib-5.2.1_1... [pkg-builder.dan.net.uk] | | `-- Extracting giflib-5.2.1_1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting webp-1.3.2_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-pillow-10.2.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-pluggy-1.4.0... [pkg-builder.dan.net.uk] `-- Extracting py39-pluggy-1.4.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-pyparsing-3.1.1... [pkg-builder.dan.net.uk] `-- Extracting py39-pyparsing-3.1.1: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-tornado-6.3.3... [pkg-builder.dan.net.uk] `-- Extracting py39-tornado-6.3.3: .......... done [pkg-builder.dan.net.uk] `-- Installing qhull-8.0.2_3,1... [pkg-builder.dan.net.uk] `-- Extracting qhull-8.0.2_3,1: .......... done [pkg-builder.dan.net.uk] Extracting py39-matplotlib-3.8.0: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from freetype2-2.13.2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from freeglut-3.2.1: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. ===> py39-PySCeS-1.1.1 depends on package: py39-matplotlib>0 - found ===> Returning to build of py39-PySCeS-1.1.1 ===> py39-PySCeS-1.1.1 depends on package: py39-scipy>0 - not found ===> Installing existing package /packages/All/py39-scipy-1.11.1_2.pkg [pkg-builder.dan.net.uk] Installing py39-scipy-1.11.1_2... [pkg-builder.dan.net.uk] `-- Installing blas-3.12.0_1... [pkg-builder.dan.net.uk] `-- Extracting blas-3.12.0_1: ..... done [pkg-builder.dan.net.uk] Extracting py39-scipy-1.11.1_2: .......... done ===> py39-PySCeS-1.1.1 depends on package: py39-scipy>0 - found ===> Returning to build of py39-PySCeS-1.1.1 ===> py39-PySCeS-1.1.1 depends on executable: gfortran13 - found ===> py39-PySCeS-1.1.1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-PySCeS-1.1.1 depends on file: /usr/local/bin/python3.9 - found ===> py39-PySCeS-1.1.1 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py39-PySCeS-1.1.1 setuptools is available. bdist_conda not available. 'install_dir' :: /usr/local/lib/python3.9/site-packages/pysces 'model_dir' :: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/Pysces/psc 'output_dir' :: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/Pysces 'gnuplot_dir' :: None 'silentstart' :: False 'change_dir_on_start' :: False 'custom_datatype' :: None Default configuration file installed Building pitcon Building nleq2 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py39-PySCeS-1.1.1 setuptools is available. bdist_conda not available. 'install_dir' :: /usr/local/lib/python3.9/site-packages/pysces 'model_dir' :: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/Pysces/psc 'output_dir' :: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/Pysces 'gnuplot_dir' :: None 'silentstart' :: False 'change_dir_on_start' :: False 'custom_datatype' :: None Default configuration file installed Building pitcon Building nleq2 -------------------------------------------------------------------------------- -- Trying 'Ninja' generator -------------------------------- --------------------------- ---------------------- ----------------- ------------ ------- -- CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. Not searching for unused variables given on the command line. CMake Error: CMake was unable to find a build program corresponding to "Ninja". CMAKE_MAKE_PROGRAM is not set. You probably need to select a different build tool. -- Configuring incomplete, errors occurred! -- ------- ------------ ----------------- ---------------------- --------------------------- -------------------------------- -- Trying 'Ninja' generator - failure -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Trying 'Unix Makefiles' generator -------------------------------- --------------------------- ---------------------- ----------------- ------------ ------- -- CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. Not searching for unused variables given on the command line. -- The C compiler identification is Clang 14.0.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - failed -- Check for working C compiler: /ccache/libexec/ccache/cc -- Check for working C compiler: /ccache/libexec/ccache/cc - works -- Detecting C compile features -- Detecting C compile features - done -- The CXX compiler identification is Clang 14.0.5 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - failed -- Check for working CXX compiler: /ccache/libexec/ccache/c++ -- Check for working CXX compiler: /ccache/libexec/ccache/c++ - works -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (48.0s) -- Generating done (0.0s) -- Build files have been written to: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/_cmake_test_compile/build -- ------- ------------ ----------------- ---------------------- --------------------------- -------------------------------- -- Trying 'Unix Makefiles' generator - success -------------------------------------------------------------------------------- Configuring Project Working directory: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/_skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-build Command: /usr/local/bin/cmake /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1 -G 'Unix Makefiles' -DCMAKE_INSTALL_PREFIX:PATH=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/_skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install -DPYTHON_VERSION_STRING:STRING=3.9.18 -DSKBUILD:INTERNAL=TRUE -DCMAKE_MODULE_PATH:PATH=/usr/local/lib/python3.9/site-packages/skbuild/resources/cmake -DPYTHON_EXECUTABLE:PATH=/usr/local/bin/python3.9 -DPYTHON_INCLUDE_DIR:PATH=/usr/local/include/python3.9 -DPYTHON_LIBRARY:PATH=/usr/local/lib/libpython3.9.so -DPython_EXECUTABLE:PATH=/usr/local/bin/python3.9 -DPython_ROOT_DIR:PATH=/usr/local -DPython_INCLUDE_DIR:PATH=/usr/local/include/python3.9 -DPython_FIND_REGISTRY:STRING=NEVER -DPython_NumPy_INCLUDE_DIRS:PATH=/usr/local/lib/python3.9/site-packages/numpy/core/include -DPython3_EXECUTABLE:PATH=/usr/local/bin/python3.9 -DPython3_ROOT_DIR:PATH=/usr/local -DPython3_INCLUDE_DIR:PATH=/usr/local/include/python3.9 -DPython3_FIND_REGISTRY:STRING=NEVER -DPython3_NumPy_INCLUDE_DIRS:PATH=/usr/local/lib/python3.9/site-packages/numpy/core/include -DCMAKE_BUILD_TYPE:STRING=Release -- The C compiler identification is Clang 14.0.5 -- The CXX compiler identification is Clang 14.0.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - failed -- Check for working C compiler: /ccache/libexec/ccache/cc -- Check for working C compiler: /ccache/libexec/ccache/cc - works -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - failed -- Check for working CXX compiler: /ccache/libexec/ccache/c++ -- Check for working CXX compiler: /ccache/libexec/ccache/c++ - works -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/local/lib/python3.9/site-packages/skbuild/resources/cmake/FindPythonExtensions.cmake:247 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:5 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.9 (found version "3.9.18") CMake Warning (dev) at /usr/local/lib/python3.9/site-packages/skbuild/resources/cmake/FindPythonExtensions.cmake:248 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:5 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/local/lib/libpython3.9.so (found version "3.9.18") CMake Warning (dev) at /usr/local/lib/python3.9/site-packages/skbuild/resources/cmake/FindNumPy.cmake:43 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:6 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/local/lib/python3.9/site-packages/skbuild/resources/cmake/FindNumPy.cmake:44 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:6 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found NumPy: /usr/local/lib/python3.9/site-packages/numpy/core/include (found version "1.25.0") -- Found F2PY: /usr/local/bin/f2py3 (found version "1.25.0") -- F2PY included from: /usr/local/lib/python3.9/site-packages/numpy/f2py/src -- Configuring done (15.7s) -- Generating done (1.8s) CMake Warning: Manually-specified variables were not used by the project: Python3_EXECUTABLE Python3_FIND_REGISTRY Python3_INCLUDE_DIR Python3_NumPy_INCLUDE_DIRS Python3_ROOT_DIR Python_EXECUTABLE Python_FIND_REGISTRY Python_INCLUDE_DIR Python_NumPy_INCLUDE_DIRS Python_ROOT_DIR SKBUILD -- Build files have been written to: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/_skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-build [ 25%] Building C object CMakeFiles/_f2py_runtime_library.dir/usr/local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c.o [ 50%] Linking C static library lib_f2py_runtime_library.a [ 50%] Built target _f2py_runtime_library [ 75%] Generating nleq2.cpython-39.so running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "nleq2" sources creating f2py_build creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9 creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2 INFO: f2py options: [] INFO: f2py: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.pyf append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' Reading fortran codes... Reading file '/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.pyf' (format:free) Post-processing... Block: nleq2__user__routines Block: nleq2_user_interface Block: fcn Block: jac Block: nleq2 Block: nleq2 Block: nleq2 In: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.pyf:nleq2:nleq2:nleq2 get_useparameters: no module nleq2__user__routines info used by nleq2 Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Building modules... Constructing call-back function "cb_fcn_in_nleq2__user__routines" def fcn(x,ifail,[n]): return f,ifail Constructing call-back function "cb_jac_in_nleq2__user__routines" def jac(x,[n,m1]): return a Building module "nleq2"... Generating possibly empty wrappers" Maybe empty "nleq2-f2pywrappers.f" Constructing wrapper function "nleq2"... x,xscal,rtol,iopt,ierr = nleq2(fcn,jac,x,xscal,rtol,iopt,iwk,rwk,[n,liwk,lrwk,fcn_extra_args,jac_extra_args]) Wrote C/API module "nleq2" to file "f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2/nleq2module.c" INFO: adding 'f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2/fortranobject.c' to sources. INFO: adding 'f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2' to include_dirs. creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9 creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2 copying /usr/local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2 copying /usr/local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2 INFO: adding 'f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2/nleq2-f2pywrappers.f' to sources. INFO: build_src: building npy-pkg config files /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build_ext INFO: customize UnixCCompiler INFO: C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC creating /tmp/tmpztugo22o/tmp creating /tmp/tmpztugo22o/tmp/tmpztugo22o INFO: compile options: '-MMD -MF /tmp/tmpztugo22o/file.c.d -c' INFO: cc: /tmp/tmpztugo22o/file.c INFO: customize UnixCCompiler using build_ext INFO: get_default_fcompiler: matching types: '['gnu', 'gnu95']' INFO: customize GnuFCompiler INFO: Found executable /usr/local/bin/gfortran13 WARN: gnu: no Fortran 90 compiler found WARN: Could not locate executable cc -shared INFO: Found executable /usr/local/bin/ld INFO: Found executable /usr/local/bin/ar INFO: Found executable /usr/local/bin/ranlib WARN: gnu: no Fortran 90 compiler found INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'nleq2' extension INFO: compiling C sources INFO: C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC creating f2py_build/f2py_build creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9 creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2 creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9 creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2 INFO: compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -If2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c' INFO: cc: f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2/fortranobject.c INFO: cc: f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2/nleq2module.c INFO: compiling Fortran sources INFO: Fortran f77 compiler: gfortran13 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O -Wl,-rpath=/usr/local/lib/gcc13 -O3 -funroll-loops Fortran f90 compiler: gfortran13 -Wall -g -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc13 -fPIC -O -Wl,-rpath=/usr/local/lib/gcc13 -O3 -funroll-loops Fortran fix compiler: gfortran13 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc13 -fPIC -O -Wl,-rpath=/usr/local/lib/gcc13 -O3 -funroll-loops creating f2py_build/wrkdirs creating f2py_build/wrkdirs/usr creating f2py_build/wrkdirs/usr/ports creating f2py_build/wrkdirs/usr/ports/biology creating f2py_build/wrkdirs/usr/ports/biology/py-PySCeS creating f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 creating f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1 creating f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces creating f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2 INFO: compile options: '-If2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c' INFO: gfortran13:f77: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f INFO: gfortran13:f77: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/linalg_nleq2.f INFO: gfortran13:f77: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/zibmon.f INFO: gfortran13:f77: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/zibsec.f INFO: gfortran13:f77: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/wnorm.f INFO: gfortran13:f77: f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2/nleq2-f2pywrappers.f /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/linalg_nleq2.f:183:32: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | 1 Warning: Unused variable 'd1mach' declared at (1) [-Wunused-variable] INFO: gfortran13:f77: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/zibconst.f /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/zibmon.f:384:55-69: 384 | $ 'The following indices are active', (INDACT(I),I=0,IONCNT) | 1 2 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/zibmon.f:394:55-69: 394 | $ 'The following indices are active', (INDACT(I),I=0,IONCNT) | 1 2 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:1557:72: 1557 | $ ' FCCOR = ', D18.10, ' FC = ', D18.10, /, | 1 Warning: Line truncated at (1) [-Wline-truncation] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:1558:72: 1558 | $ ' DMYCOR = ', D18.10, ' FCNUMP = ', D18.10, /, | 1 Warning: Line truncated at (1) [-Wline-truncation] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:1388:20: 1388 | INTRINSIC DLOG | 1 Warning: Type specified for intrinsic function 'dlog' at (1) is ignored [-Wsurprising] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:1419:17: 1419 | TOLMIN = DSQRT(TEN*EPMACH) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:1926:24: 1926 | FCH = FC | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:1128:63: 1128 | $QA,A,DXSAVE,DX,DXQ,XA,XWA,F,FA,ETA,XW,FW,DXQA,QU,T1,T2,T3,FC, | 1 Warning: Unused dummy argument 't3' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:3106:51: 3106 | SUBROUTINE N2PRV2(DLEVF,DLEVX,FC,NITER,MPRMON,LUMON,QMIXIO, | 1 Warning: Unused dummy argument 'mprmon' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:2675:61: 2675 | SUBROUTINE N2LVLS(N,DX1,XW,F,DXQ,CONV,SUMX,DLEVF,MPRMON,QDSCAL) | 1 Warning: Unused dummy argument 'mprmon' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:2628:64: 2628 | SUBROUTINE N2SOLV(N,LDA,LDAINV,ML,MU,A,AINV,B,Z,IRANK,IOPT, | 1 Warning: Unused dummy argument 'iopt' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:2629:26: 2629 | $IFAIL,LIWK,IWK,LAIWK,LRWK,RWK,LARWK) | 1 Warning: Unused dummy argument 'laiwk' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:2629:41: 2629 | $IFAIL,LIWK,IWK,LAIWK,LRWK,RWK,LARWK) | 1 Warning: Unused dummy argument 'larwk' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:2628:39: 2628 | SUBROUTINE N2SOLV(N,LDA,LDAINV,ML,MU,A,AINV,B,Z,IRANK,IOPT, | 1 Warning: Unused dummy argument 'ml' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:2628:42: 2628 | SUBROUTINE N2SOLV(N,LDA,LDAINV,ML,MU,A,AINV,B,Z,IRANK,IOPT, | 1 Warning: Unused dummy argument 'mu' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:2520:39: 2520 | SUBROUTINE N2FACT(N,LDA,LDAINV,ML,MU,A,AINV,COND,IRANK,IOPT, | 1 Warning: Unused dummy argument 'ml' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:2520:42: 2520 | SUBROUTINE N2FACT(N,LDA,LDAINV,ML,MU,A,AINV,COND,IRANK,IOPT, | 1 Warning: Unused dummy argument 'mu' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:2383:52: 2383 | SUBROUTINE N2SCAL(N,X,XA,XSCAL,XW,ISCAL,QINISC,IOPT,LRWK,RWK) | 1 Warning: Unused dummy argument 'qinisc' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:2383:66: 2383 | SUBROUTINE N2SCAL(N,X,XA,XSCAL,XW,ISCAL,QINISC,IOPT,LRWK,RWK) | 1 Warning: Unused dummy argument 'rwk' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:974:57: 974 | SUBROUTINE N2PCHK(N,X,XSCAL,RTOL,IOPT,IERR,LIWK,IWK,LRWK,RWK) | 1 Warning: Unused dummy argument 'iwk' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:974:66: 974 | SUBROUTINE N2PCHK(N,X,XSCAL,RTOL,IOPT,IERR,LIWK,IWK,LRWK,RWK) | 1 Warning: Unused dummy argument 'rwk' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:974:27: 974 | SUBROUTINE N2PCHK(N,X,XSCAL,RTOL,IOPT,IERR,LIWK,IWK,LRWK,RWK) | 1 Warning: Unused dummy argument 'x' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/linalg_nleq2.f:245:16: 245 | IF(H.LT.HMAX) JD = 1 | ^ Warning: 'hmax' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/linalg_nleq2.f:183:39: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | ^ note: 'hmax' was declared here /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/linalg_nleq2.f:272:26: 272 | IF(T.LE.DD .OR. K.GT.IRANKH) THEN | ^ Warning: 'dd' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/linalg_nleq2.f:183:25: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | ^ note: 'dd' was declared here /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/linalg_nleq2.f:373:15: 373 | IF (S.GT.-ONE) THEN | ^ Warning: 's' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/linalg_nleq2.f:183:41: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | ^ note: 's' was declared here /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/linalg_nleq2.f:391:33: 391 | IF (IRANKC+1.LE.IRANK .AND. T.NE.ZERO) THEN | ^ Warning: 't' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/linalg_nleq2.f:183:46: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | ^ note: 't' was declared here /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:1829:72: 1829 | FCMON = DMIN1(FC,FCMON) | ^ Warning: 'fcmon' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:1390:56: 1390 | $ SUMXA0,SUMXA1,SUMXA2,SUMXTE,FCMON,DLOG | ^ note: 'fcmon' was declared here /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:2351:72: 2351 | SUMX = SUMXA | ^ Warning: 'sumxa' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:1383:58: 1383 | $FCNUMP,FCCOR,FCNMP2,FCNUMK,FCREDU,DLEVFN,SENS1,SUMXA,SUM1,SUM2, | ^ note: 'sumxa' was declared here /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:821:12: 821 | IF (QBDAMP) THEN | ^ Warning: 'qbdamp' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.f:667:47: 667 | LOGICAL QINIMO,QRANK1,QFCSTR,QSUCC,QBDAMP | ^ note: 'qbdamp' declared here INFO: /usr/local/bin/gfortran13 -Wall -g -Wall -g -O -Wl,-rpath=/usr/local/lib/gcc13 -shared -lpython3.9 -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -L/usr/local/lib f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2/nleq2module.o f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2/fortranobject.o f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2.o f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/linalg_nleq2.o f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/zibmon.o f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/zibsec.o f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/zibconst.o f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/wnorm.o f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/nleq2/nleq2-f2pywrappers.o -L/usr/local/lib/gcc13/gcc/x86_64-portbld-freebsd13.2/13.2.0 -L/usr/local/lib -lgfortran -o ./nleq2.cpython-39.so [ 75%] Built target nleq2 [100%] Generating pitcon.cpython-39.so running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "pitcon" sources creating f2py_build creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9 creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon INFO: f2py options: [] INFO: f2py: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pitcon.pyf append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' Reading fortran codes... Reading file '/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pitcon.pyf' (format:free) Post-processing... Block: pitcon1__user__routines Block: pitcon1_user_interface Block: df Block: fx Block: pitcon Block: pitcon1 In: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pitcon.pyf:pitcon:unknown_interface:pitcon1 get_useparameters: no module pitcon1__user__routines info used by pitcon1 Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Building modules... Constructing call-back function "cb_df_in_pitcon1__user__routines" def df(x,[nvar]): return fjac,ierror Constructing call-back function "cb_fx_in_pitcon1__user__routines" def fx(x,[nvar]): return fvec,ierror Building module "pitcon"... Generating possibly empty wrappers" Maybe empty "pitcon-f2pywrappers.f" Constructing wrapper function "pitcon1"... getarrdims:warning: assumed shape array, using 0 instead of '*' getarrdims:warning: assumed shape array, using 0 instead of '*' ierror,iwork,rwork,xr = pitcon1(df,fpar,fx,ipar,iwork,rwork,xr,[liw,nvar,lrw,imth,df_extra_args,fx_extra_args,overwrite_iwork,overwrite_rwork,overwrite_xr]) Wrote C/API module "pitcon" to file "f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon/pitconmodule.c" INFO: adding 'f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon/fortranobject.c' to sources. INFO: adding 'f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon' to include_dirs. creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9 creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces creating f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon copying /usr/local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon copying /usr/local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon INFO: adding 'f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon/pitcon-f2pywrappers.f' to sources. INFO: build_src: building npy-pkg config files /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build_ext INFO: customize UnixCCompiler INFO: C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC creating /tmp/tmpc0szm8jy/tmp creating /tmp/tmpc0szm8jy/tmp/tmpc0szm8jy INFO: compile options: '-MMD -MF /tmp/tmpc0szm8jy/file.c.d -c' INFO: cc: /tmp/tmpc0szm8jy/file.c INFO: customize UnixCCompiler using build_ext INFO: get_default_fcompiler: matching types: '['gnu', 'gnu95']' INFO: customize GnuFCompiler INFO: Found executable /usr/local/bin/gfortran13 WARN: gnu: no Fortran 90 compiler found WARN: Could not locate executable cc -shared INFO: Found executable /usr/local/bin/ld INFO: Found executable /usr/local/bin/ar INFO: Found executable /usr/local/bin/ranlib WARN: gnu: no Fortran 90 compiler found INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'pitcon' extension INFO: compiling C sources INFO: C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC creating f2py_build/f2py_build creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9 creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9 creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces creating f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon INFO: compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -If2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c' INFO: cc: f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon/pitconmodule.c INFO: cc: f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon/fortranobject.c INFO: compiling Fortran sources INFO: Fortran f77 compiler: gfortran13 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O -Wl,-rpath=/usr/local/lib/gcc13 -O3 -funroll-loops Fortran f90 compiler: gfortran13 -Wall -g -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc13 -fPIC -O -Wl,-rpath=/usr/local/lib/gcc13 -O3 -funroll-loops Fortran fix compiler: gfortran13 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -O -Wl,-rpath=/usr/local/lib/gcc13 -fPIC -O -Wl,-rpath=/usr/local/lib/gcc13 -O3 -funroll-loops creating f2py_build/wrkdirs creating f2py_build/wrkdirs/usr creating f2py_build/wrkdirs/usr/ports creating f2py_build/wrkdirs/usr/ports/biology creating f2py_build/wrkdirs/usr/ports/biology/py-PySCeS creating f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 creating f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1 creating f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces creating f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon INFO: compile options: '-If2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c' INFO: gfortran13:f77: f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon/pitcon-f2pywrappers.f INFO: gfortran13:f77: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.f INFO: gfortran13:f77: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61w.f INFO: gfortran13:f77: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.f:961:72: 961 | 10 ASSIGN 30 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.f:966:20: 966 | 20 GO TO NEXT,(30, 50, 70, 110) | 1 Warning: Deleted feature: Assigned GOTO statement at (1) /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.f:968:72: 968 | ASSIGN 50 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.f:977:72: 977 | ASSIGN 70 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.f:983:72: 983 | ASSIGN 110 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.f:1019:72: 1019 | 95 SUM = SUM + DX(J)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 95 at (1) /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.f:996:5: 996 | 110 IF( DABS(DX(I)) .LE. XMAX ) GO TO 115 | 1 Warning: Label 110 at (1) defined but not used [-Wunused-label] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.f:991:5: 991 | 70 IF( DABS(DX(I)) .GT. CUTLO ) GO TO 75 | 1 Warning: Label 70 at (1) defined but not used [-Wunused-label] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.f:973:5: 973 | 50 IF( DX(I) .EQ. ZERO) GO TO 200 | 1 Warning: Label 50 at (1) defined but not used [-Wunused-label] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:1782:5: 1782 | 700 CONTINUE | 1 Warning: Label 700 at (1) defined but not used [-Wunused-label] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:1566:3: 1566 | 410 CONTINUE | 1 Warning: Label 410 at (1) defined but not used [-Wunused-label] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:3671:27: 3671 | * IWORK,JAC,LIW,LOUNIT,NBAND,NEQN,NVAR,X,XTEMP,WORK1,WORK2) | 1 Warning: Unused dummy argument 'lounit' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:3126:21: 3126 | * JAC,LIW,LOUNIT,NVAR,X,WORK1,WORK2) | 1 Warning: Unused dummy argument 'lounit' at (1) [-Wunused-dummy-argument] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:2533:11: 2533 | 1 .OR.(P.GE.ONEP5*ABS(HALFUB*Q)-ABS(TOLER*Q))) THEN | ^ Warning: 'sdel3' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:2423:28: 2423 | DOUBLE PRECISION SDEL3 | ^ note: 'sdel3' was declared here /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.f:996:10: 996 | 110 IF( DABS(DX(I)) .LE. XMAX ) GO TO 115 | ^ Warning: 'xmax' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.f:915:63: 915 | DOUBLE PRECISION DX(1), CUTLO, CUTHI, HITEST, SUM, XMAX,ZERO,ONE | ^ note: 'xmax' was declared here /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:3060:72: 3060 | * JACK,LIW,LOUNIT,NVAR,X,RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxm' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:2994:20: 2994 | INTEGER LFXM | ^ note: 'lfxm' was declared here /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:3060:72: 3060 | * JACK,LIW,LOUNIT,NVAR,X,RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxp' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:2995:20: 2995 | INTEGER LFXP | ^ note: 'lfxp' was declared here /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:3515:72: 3515 | * RWORK(LDX),RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'ldx' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:3422:19: 3422 | INTEGER LDX | ^ note: 'ldx' was declared here /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:3515:72: 3515 | * RWORK(LDX),RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxm' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:3423:20: 3423 | INTEGER LFXM | ^ note: 'lfxm' was declared here /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:3515:72: 3515 | * RWORK(LDX),RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxp' may be used uninitialized [-Wmaybe-uninitialized] /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.f:3424:20: 3424 | INTEGER LFXP | ^ note: 'lfxp' was declared here INFO: /usr/local/bin/gfortran13 -Wall -g -Wall -g -O -Wl,-rpath=/usr/local/lib/gcc13 -shared -lpython3.9 -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -L/usr/local/lib f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon/pitconmodule.o f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon/fortranobject.o f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/pcon61subd.o f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61.o f2py_build/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pitcon/dpcon61w.o f2py_build/f2py_build/src.freebsd-13.2-RELEASE-p10-amd64-3.9/pysces/pitcon/pitcon-f2pywrappers.o -L/usr/local/lib/gcc13/gcc/x86_64-portbld-freebsd13.2/13.2.0 -L/usr/local/lib -lgfortran -o ./pitcon.cpython-39.so [100%] Built target pitcon Install the project... -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/_skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/nleq2.cpython-39.so -- Installing: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/_skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pitcon/pitcon.cpython-39.so copying pysces/PyscesJWSParse.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesJWSParse.py copying pysces/PyscesSED.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesSED.py copying pysces/PyscesModelMap.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesModelMap.py copying pysces/PyscesContrib.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesContrib.py copying pysces/PyscesRandom.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesRandom.py copying pysces/PyscesMiniModel.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesMiniModel.py copying pysces/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/__init__.py copying pysces/PyscesUtils.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesUtils.py copying pysces/version.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/version.py copying pysces/PyscesStoich.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesStoich.py copying pysces/PyscesPlot.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesPlot.py copying pysces/_multicorescan.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/_multicorescan.py copying pysces/PyscesParse.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesParse.py copying pysces/PyscesLink.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesLink.py copying pysces/PyscesModel.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesModel.py copying pysces/PyscesInterfaces.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesInterfaces.py copying pysces/PyscesParScan.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesParScan.py copying pysces/PyscesWeb.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesWeb.py copying pysces/PyscesConfig.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesConfig.py copying pysces/PyscesTest.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesTest.py copying pysces/PyscesContribUser.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesContribUser.py copying pysces/PyscesSBML.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesSBML.py copying pysces/PyscesScan.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesScan.py copying pysces/RateChar.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/RateChar.py copying pysces/PyscesPlot2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesPlot2.py creating directory _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/tests copying pysces/tests/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/tests/__init__.py creating directory _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples copying pysces/examples/testparscanner.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testparscanner.py copying pysces/examples/testinvalidstate.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testinvalidstate.py copying pysces/examples/pysces_stochpy.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/pysces_stochpy.py copying pysces/examples/testratechar.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testratechar.py copying pysces/examples/testRunScatter.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testRunScatter.py creating directory _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib copying pysces/lib/lex.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/lex.py copying pysces/lib/FirstDerivatives.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/FirstDerivatives.py copying pysces/lib/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/__init__.py copying pysces/lib/yacc.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/yacc.py copying pysces/lib/pyparsing.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/pyparsing.py copying pysces/lib/miriamids.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/miriamids.py creating directory _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/sandbox copying pysces/sandbox/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/sandbox/__init__.py copying pysces/sandbox/Intersect.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/sandbox/Intersect.py creating directory _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib copying pysces/contrib/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/__init__.py creating directory _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/demo copying pysces/contrib/demo/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/demo/__init__.py copying pysces/contrib/demo/demotest.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/demo/demotest.py creating directory _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2 copying pysces/core2/lex.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/lex.py copying pysces/core2/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/__init__.py copying pysces/core2/version.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/version.py copying pysces/core2/yacc.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/yacc.py copying pysces/core2/InfixParser.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/InfixParser.py copying pysces/core2/PyscesCore2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/PyscesCore2.py copying pysces/core2/PyscesCore2Interfaces.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/PyscesCore2Interfaces.py copying pysces/core2/PyscesCore2Modules.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/PyscesCore2Modules.py creating directory _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken copying pysces/kraken/KrakenDataTools.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/KrakenDataTools.py copying pysces/kraken/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/__init__.py copying pysces/kraken/Kraken.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/Kraken.py copying pysces/kraken/KrakenServer.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/KrakenServer.py copying pysces/kraken/startup.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/startup.py copying pysces/kraken/KrakenNET.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/KrakenNET.py creating directory _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers copying pysces/kraken/controllers/kraken_scanner2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_scanner2.py copying pysces/kraken/controllers/kraken_continuation_eigen2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_continuation_eigen2.py copying pysces/kraken/controllers/kraken_intersect.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_intersect.py copying pysces/kraken/controllers/kraken_continuation_eigen.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_continuation_eigen.py copying pysces/kraken/controllers/kraken_continuation.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_continuation.py copying pysces/kraken/controllers/kill_tentacles.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kill_tentacles.py copying pysces/pitcon/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pitcon/__init__.py copying pysces/nleq2/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/__init__.py creating directory _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/Burstmodel.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/Burstmodel.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/pysces_test_pitcon.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_pitcon.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/isola2a.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/isola2a.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/pysces_test_linear1.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_linear1.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/pysces_test_moiety1.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_moiety1.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/lin5_hill.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/lin5_hill.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/pysces_test_branch1.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_branch1.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/examples/parallelscan.ipy -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/parallelscan.ipy copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/examples/benchmark.ipy -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/benchmark.ipy copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2_readme.txt -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/nleq2_readme.txt copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/readme.txt -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/readme.txt creating directory _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/docs copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/docs/userguide.pdf -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/docs/userguide.pdf copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pyscfg.ini -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pyscfg.ini copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/version.txt -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/version.txt running build running build_py creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39 creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesJWSParse.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesSED.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesModelMap.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesContrib.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesRandom.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesMiniModel.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesUtils.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/version.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesStoich.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesPlot.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/_multicorescan.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesParse.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesLink.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesModel.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesInterfaces.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesParScan.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesWeb.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesConfig.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesTest.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesContribUser.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesSBML.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesScan.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/RateChar.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesPlot2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/tests copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/tests/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/tests creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testparscanner.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testinvalidstate.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/pysces_stochpy.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testratechar.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testRunScatter.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/lex.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/FirstDerivatives.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/yacc.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/pyparsing.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/miriamids.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/sandbox copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/sandbox/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/sandbox copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/sandbox/Intersect.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/sandbox creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/contrib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/contrib creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/contrib/demo copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/demo/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/contrib/demo copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/demo/demotest.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/contrib/demo creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/lex.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/version.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/yacc.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/InfixParser.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/PyscesCore2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/PyscesCore2Interfaces.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/PyscesCore2Modules.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/KrakenDataTools.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/Kraken.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/KrakenServer.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/startup.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/KrakenNET.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_scanner2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_continuation_eigen2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_intersect.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_continuation_eigen.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_continuation.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kill_tentacles.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pitcon copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pitcon/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pitcon creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/nleq2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/nleq2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pyscfg.ini -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/version.txt -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/parallelscan.ipy -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/benchmark.ipy -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/Burstmodel.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_pitcon.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/isola2a.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_linear1.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_moiety1.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/lin5_hill.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_branch1.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels creating _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/docs copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/docs/userguide.pdf -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/docs copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pitcon/pitcon.cpython-39.so -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pitcon copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/nleq2_readme.txt -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/nleq2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/readme.txt -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/nleq2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/nleq2.cpython-39.so -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/nleq2 copied 64 files running build_ext =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-PySCeS-1.1.1 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> py39-PySCeS-1.1.1 depends on package: py39-matplotlib>0 - found ===> py39-PySCeS-1.1.1 depends on package: py39-scipy>0 - found ===> py39-PySCeS-1.1.1 depends on package: py39-python-libsbml>0 - not found ===> Installing existing package /packages/All/py39-python-libsbml-5.20.1.pkg [pkg-builder.dan.net.uk] Installing py39-python-libsbml-5.20.1... [pkg-builder.dan.net.uk] Extracting py39-python-libsbml-5.20.1: ........ done ===> py39-PySCeS-1.1.1 depends on package: py39-python-libsbml>0 - found ===> Returning to build of py39-PySCeS-1.1.1 ===> py39-PySCeS-1.1.1 depends on executable: gfortran13 - found ===> py39-PySCeS-1.1.1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-PySCeS-1.1.1 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py39-PySCeS-1.1.1 ===> Generating temporary packing list /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( [ 50%] Built target _f2py_runtime_library [ 75%] Built target nleq2 [100%] Built target pitcon Install the project... -- Install configuration: "Release" -- Up-to-date: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/_skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/nleq2.cpython-39.so -- Up-to-date: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/_skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pitcon/pitcon.cpython-39.so setuptools is available. bdist_conda not available. 'install_dir' :: /usr/local/lib/python3.9/site-packages/pysces 'model_dir' :: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/Pysces/psc 'output_dir' :: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/Pysces 'gnuplot_dir' :: None 'silentstart' :: False 'change_dir_on_start' :: False 'custom_datatype' :: None Default configuration file installed Building pitcon Building nleq2 copying pysces/PyscesJWSParse.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesJWSParse.py copying pysces/PyscesSED.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesSED.py copying pysces/PyscesModelMap.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesModelMap.py copying pysces/PyscesContrib.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesContrib.py copying pysces/PyscesRandom.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesRandom.py copying pysces/PyscesMiniModel.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesMiniModel.py copying pysces/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/__init__.py copying pysces/PyscesUtils.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesUtils.py copying pysces/version.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/version.py copying pysces/PyscesStoich.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesStoich.py copying pysces/PyscesPlot.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesPlot.py copying pysces/_multicorescan.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/_multicorescan.py copying pysces/PyscesParse.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesParse.py copying pysces/PyscesLink.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesLink.py copying pysces/PyscesModel.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesModel.py copying pysces/PyscesInterfaces.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesInterfaces.py copying pysces/PyscesParScan.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesParScan.py copying pysces/PyscesWeb.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesWeb.py copying pysces/PyscesConfig.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesConfig.py copying pysces/PyscesTest.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesTest.py copying pysces/PyscesContribUser.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesContribUser.py copying pysces/PyscesSBML.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesSBML.py copying pysces/PyscesScan.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesScan.py copying pysces/RateChar.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/RateChar.py copying pysces/PyscesPlot2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesPlot2.py copying pysces/tests/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/tests/__init__.py copying pysces/examples/testparscanner.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testparscanner.py copying pysces/examples/testinvalidstate.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testinvalidstate.py copying pysces/examples/pysces_stochpy.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/pysces_stochpy.py copying pysces/examples/testratechar.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testratechar.py copying pysces/examples/testRunScatter.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testRunScatter.py copying pysces/lib/lex.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/lex.py copying pysces/lib/FirstDerivatives.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/FirstDerivatives.py copying pysces/lib/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/__init__.py copying pysces/lib/yacc.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/yacc.py copying pysces/lib/pyparsing.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/pyparsing.py copying pysces/lib/miriamids.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/miriamids.py copying pysces/sandbox/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/sandbox/__init__.py copying pysces/sandbox/Intersect.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/sandbox/Intersect.py copying pysces/contrib/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/__init__.py copying pysces/contrib/demo/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/demo/__init__.py copying pysces/contrib/demo/demotest.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/demo/demotest.py copying pysces/core2/lex.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/lex.py copying pysces/core2/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/__init__.py copying pysces/core2/version.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/version.py copying pysces/core2/yacc.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/yacc.py copying pysces/core2/InfixParser.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/InfixParser.py copying pysces/core2/PyscesCore2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/PyscesCore2.py copying pysces/core2/PyscesCore2Interfaces.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/PyscesCore2Interfaces.py copying pysces/core2/PyscesCore2Modules.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/PyscesCore2Modules.py copying pysces/kraken/KrakenDataTools.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/KrakenDataTools.py copying pysces/kraken/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/__init__.py copying pysces/kraken/Kraken.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/Kraken.py copying pysces/kraken/KrakenServer.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/KrakenServer.py copying pysces/kraken/startup.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/startup.py copying pysces/kraken/KrakenNET.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/KrakenNET.py copying pysces/kraken/controllers/kraken_scanner2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_scanner2.py copying pysces/kraken/controllers/kraken_continuation_eigen2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_continuation_eigen2.py copying pysces/kraken/controllers/kraken_intersect.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_intersect.py copying pysces/kraken/controllers/kraken_continuation_eigen.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_continuation_eigen.py copying pysces/kraken/controllers/kraken_continuation.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_continuation.py copying pysces/kraken/controllers/kill_tentacles.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kill_tentacles.py copying pysces/pitcon/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pitcon/__init__.py copying pysces/nleq2/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/__init__.py copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/Burstmodel.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/Burstmodel.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/pysces_test_pitcon.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_pitcon.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/isola2a.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/isola2a.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/pysces_test_linear1.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_linear1.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/pysces_test_moiety1.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_moiety1.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/lin5_hill.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/lin5_hill.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pscmodels/pysces_test_branch1.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_branch1.psc copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/examples/parallelscan.ipy -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/parallelscan.ipy copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/examples/benchmark.ipy -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/benchmark.ipy copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/nleq2_readme.txt -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/nleq2_readme.txt copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/nleq2/readme.txt -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/readme.txt copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/docs/userguide.pdf -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/docs/userguide.pdf copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/pyscfg.ini -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pyscfg.ini copying /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.1.1/pysces/version.txt -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/version.txt running install running build running build_py copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesJWSParse.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesSED.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesModelMap.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesContrib.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesRandom.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesMiniModel.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesUtils.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/version.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesStoich.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesPlot.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/_multicorescan.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesParse.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesLink.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesModel.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesInterfaces.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesParScan.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesWeb.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesConfig.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesTest.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesContribUser.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesSBML.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesScan.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/RateChar.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/PyscesPlot2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/tests/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/tests copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testparscanner.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testinvalidstate.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/pysces_stochpy.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testratechar.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/testRunScatter.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/lex.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/FirstDerivatives.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/yacc.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/pyparsing.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/lib/miriamids.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/sandbox/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/sandbox copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/sandbox/Intersect.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/sandbox copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/contrib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/demo/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/contrib/demo copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/contrib/demo/demotest.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/contrib/demo copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/lex.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/version.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/yacc.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/InfixParser.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/PyscesCore2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/PyscesCore2Interfaces.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/core2/PyscesCore2Modules.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/KrakenDataTools.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/Kraken.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/KrakenServer.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/startup.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/KrakenNET.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_scanner2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_continuation_eigen2.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_intersect.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_continuation_eigen.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kraken_continuation.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/kraken/controllers/kill_tentacles.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pitcon/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pitcon copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/__init__.py -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/nleq2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pyscfg.ini -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/version.txt -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/parallelscan.ipy -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/examples/benchmark.ipy -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/Burstmodel.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_pitcon.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/isola2a.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_linear1.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_moiety1.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/lin5_hill.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/pscmodels/pysces_test_branch1.psc -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/docs/userguide.pdf -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/docs copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/nleq2_readme.txt -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/nleq2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/cmake-install/pysces/nleq2/readme.txt -> _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/nleq2 copied 64 files running build_ext running install_lib creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9 creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesJWSParse.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/docs copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/docs/userguide.pdf -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/docs copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesSED.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/pitcon copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pitcon/__init__.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/pitcon copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pitcon/pitcon.cpython-39.so -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/pitcon copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesModelMap.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesContrib.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/KrakenDataTools.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers/kraken_scanner2.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers/kraken_continuation_eigen2.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers/kraken_intersect.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers/kraken_continuation_eigen.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers/kraken_continuation.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/controllers/kill_tentacles.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/__init__.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/Kraken.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/KrakenServer.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/startup.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/kraken/KrakenNET.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesRandom.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/tests copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/tests/__init__.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/tests creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib/lex.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib/FirstDerivatives.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib/__init__.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib/yacc.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib/pyparsing.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/lib/miriamids.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesMiniModel.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/__init__.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesUtils.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples/testparscanner.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples/testinvalidstate.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples/pysces_stochpy.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples/parallelscan.ipy -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples/benchmark.ipy -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples/testratechar.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/examples/testRunScatter.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/version.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/sandbox copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/sandbox/__init__.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/sandbox copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/sandbox/Intersect.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/sandbox copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesStoich.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesPlot.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/_multicorescan.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels/Burstmodel.psc -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels/pysces_test_pitcon.psc -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels/isola2a.psc -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels/pysces_test_linear1.psc -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels/pysces_test_moiety1.psc -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels/lin5_hill.psc -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pscmodels/pysces_test_branch1.psc -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/pscmodels copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesParse.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesLink.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesModel.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesInterfaces.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesParScan.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/version.txt -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/pyscfg.ini -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesWeb.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesConfig.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2/lex.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2/__init__.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2/version.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2/yacc.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2/InfixParser.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2/PyscesCore2.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2/PyscesCore2Interfaces.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/core2/PyscesCore2Modules.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesTest.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/contrib copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/contrib/__init__.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/contrib creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/contrib/demo copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/contrib/demo/__init__.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/contrib/demo copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/contrib/demo/demotest.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/contrib/demo copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesContribUser.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesSBML.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces creating /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/nleq2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/nleq2/readme.txt -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/nleq2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/nleq2/nleq2_readme.txt -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/nleq2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/nleq2/__init__.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/nleq2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/nleq2/nleq2.cpython-39.so -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/nleq2 copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesScan.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/RateChar.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copying _skbuild/freebsd-13.2-RELEASE-p10-amd64-3.9/setuptools/lib.freebsd-13.2-RELEASE-p10-amd64-cpython-39/pysces/PyscesPlot2.py -> /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces copied 80 files byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesJWSParse.py to PyscesJWSParse.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesSED.py to PyscesSED.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/pitcon/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesModelMap.py to PyscesModelMap.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesContrib.py to PyscesContrib.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/KrakenDataTools.py to KrakenDataTools.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers/kraken_scanner2.py to kraken_scanner2.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers/kraken_continuation_eigen2.py to kraken_continuation_eigen2.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers/kraken_intersect.py to kraken_intersect.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers/kraken_continuation_eigen.py to kraken_continuation_eigen.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers/kraken_continuation.py to kraken_continuation.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/controllers/kill_tentacles.py to kill_tentacles.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/Kraken.py to Kraken.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/KrakenServer.py to KrakenServer.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/startup.py to startup.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/kraken/KrakenNET.py to KrakenNET.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesRandom.py to PyscesRandom.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib/lex.py to lex.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib/FirstDerivatives.py to FirstDerivatives.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib/yacc.py to yacc.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib/pyparsing.py to pyparsing.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/lib/miriamids.py to miriamids.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesMiniModel.py to PyscesMiniModel.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesUtils.py to PyscesUtils.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples/testparscanner.py to testparscanner.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples/testinvalidstate.py to testinvalidstate.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples/pysces_stochpy.py to pysces_stochpy.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples/testratechar.py to testratechar.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/examples/testRunScatter.py to testRunScatter.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/version.py to version.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/sandbox/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/sandbox/Intersect.py to Intersect.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesStoich.py to PyscesStoich.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesPlot.py to PyscesPlot.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/_multicorescan.py to _multicorescan.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesParse.py to PyscesParse.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesLink.py to PyscesLink.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesModel.py to PyscesModel.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesInterfaces.py to PyscesInterfaces.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesParScan.py to PyscesParScan.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesWeb.py to PyscesWeb.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesConfig.py to PyscesConfig.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2/lex.py to lex.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2/version.py to version.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2/yacc.py to yacc.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2/InfixParser.py to InfixParser.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2/PyscesCore2.py to PyscesCore2.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2/PyscesCore2Interfaces.py to PyscesCore2Interfaces.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/core2/PyscesCore2Modules.py to PyscesCore2Modules.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesTest.py to PyscesTest.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/contrib/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/contrib/demo/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/contrib/demo/demotest.py to demotest.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesContribUser.py to PyscesContribUser.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesSBML.py to PyscesSBML.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/nleq2/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesScan.py to PyscesScan.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/RateChar.py to RateChar.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces/PyscesPlot2.py to PyscesPlot2.cpython-39.pyc writing byte-compilation script '/tmp/tmp3k4np_7a.py' /usr/local/bin/python3.9 /tmp/tmp3k4np_7a.py removing /tmp/tmp3k4np_7a.py running install_egg_info running egg_info writing pysces.egg-info/PKG-INFO writing dependency_links to pysces.egg-info/dependency_links.txt writing requirements to pysces.egg-info/requires.txt writing top-level names to pysces.egg-info/top_level.txt reading manifest file 'pysces.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'setupegg.py' warning: no files found matching 'pysces/win32/libgfortran-3.dll' warning: no files found matching 'pysces/win32/libquadmath-0.dll' warning: no files found matching 'pysces/win32/libgcc_s_seh-1.dll' warning: no files found matching 'pysces/win32/libwinpthread-1.dll' adding license file 'LICENCE.txt' adding license file 'LICENSE' writing manifest file 'pysces.egg-info/SOURCES.txt' Copying pysces.egg-info to /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/stage/usr/local/lib/python3.9/site-packages/pysces-1.1.1-py3.9.egg-info running install_scripts copied 0 files writing list of installed files to '/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-04-04T09:25:59+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=6adf2325e9' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py39-PySCeS-1.1.1 ===> Building py39-PySCeS-1.1.1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py39-PySCeS-1.1.1 build of biology/py-PySCeS@py39 | py39-PySCeS-1.1.1 ended at Thu Apr 4 10:30:58 BST 2024 build time: 00:05:00