=>> Building science/py-MDAnalysisTests build started at Tue Apr 2 12:19:31 BST 2024 port directory: /usr/ports/science/py-MDAnalysisTests package name: py39-MDAnalysisTests-2.3.0_1 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 593 Jun 29 2023 /usr/ports/science/py-MDAnalysisTests/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: 3d9a815d9c Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 09 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root 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limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-MDAnalysisTests-2.3.0_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-MDAnalysisTests-2.3.0_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-MDAnalysisTests-2.3.0_1 for building => SHA256 Checksum OK for MDAnalysisTests-2.3.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py39-MDAnalysisTests-2.3.0_1 for building ===> Extracting for py39-MDAnalysisTests-2.3.0_1 => SHA256 Checksum OK for MDAnalysisTests-2.3.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-MDAnalysisTests-2.3.0_1 ===> Applying FreeBSD patches for py39-MDAnalysisTests-2.3.0_1 from /usr/ports/science/py-MDAnalysisTests/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py39-setuptools-63.1.0_1.pkg [pkg-builder.dan.net.uk] Installing py39-setuptools-63.1.0_1... [pkg-builder.dan.net.uk] `-- Installing python39-3.9.18_1... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.4_1... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.4_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-2.5.1... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-2.5.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing openssl-3.0.13_1,1... [pkg-builder.dan.net.uk] | `-- Extracting openssl-3.0.13_1,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.10... [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.10: .......... done [pkg-builder.dan.net.uk] `-- Extracting python39-3.9.18_1: .......... done [pkg-builder.dan.net.uk] Extracting py39-setuptools-63.1.0_1: .......... done ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-setuptools>=63.1.0 - found ===> Returning to build of py39-MDAnalysisTests-2.3.0_1 ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py39-MDAnalysisTests-2.3.0_1 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py39-MDAnalysisTests-2.3.0_1 running build running build_py creating build creating build/lib creating build/lib/MDAnalysisTests copying MDAnalysisTests/dummy.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/__init__.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/util.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/datafiles.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/test_api.py -> build/lib/MDAnalysisTests creating build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/__init__.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/fork_called.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/test_import.py -> build/lib/MDAnalysisTests/import creating build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_data.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_diffusionmap.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_persistencelength.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_encore.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/__init__.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rdf_s.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_bat.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_base.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_dielectric.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_contacts.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_gnm.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_waterdynamics.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_msd.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_density.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_lineardensity.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_distances.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hole2.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_nucleicacids.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_nuclinfo.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rdf.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_wbridge.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_leaflet.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_align.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_dihedrals.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_pca.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_helix_analysis.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rms.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_psa.py -> build/lib/MDAnalysisTests/analysis creating build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_util.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/__init__.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_nsgrid.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_augment.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_log.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_cutil.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_neighborsearch.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_distances.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_pkdtree.py -> build/lib/MDAnalysisTests/lib creating build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_group_traj_access.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segmentgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyobjects.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/__init__.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_fragments.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_wrap.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_updating_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_groups.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_accumulate.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/util.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atom.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_accessors.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residuegroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_unwrap.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyattrs.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residue.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_requires.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_copying.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topology.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segment.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomselections.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_index_dtype.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_universe.py -> build/lib/MDAnalysisTests/core creating build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_positionaveraging.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/__init__.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_base.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_wrap.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_translate.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_rotate.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_fit.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_boxdimensions.py -> build/lib/MDAnalysisTests/transformations creating build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_guessers.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_tprparser.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_altloc.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_minimal.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdbqt.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_hoomdxml.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dlpoly.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_lammpsdata.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gro.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dms.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/__init__.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_itp.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gms.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_fhiaims.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_top.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xpdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pqr.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_psf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_crd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mmtf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_str_types.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_txyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gsd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mol2.py -> build/lib/MDAnalysisTests/topology creating build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/__init__.py -> build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/test_streamlines.py -> build/lib/MDAnalysisTests/visualization creating build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_meta.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_transformations.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_duecredit.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_failure.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/__init__.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_log.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_datafiles.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_authors.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_imports.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_qcprot.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_modelling.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_pickleio.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_units.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_persistence.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_streamio.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_selections.py -> build/lib/MDAnalysisTests/utils creating build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libdcd.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/__init__.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libmdaxdr.py -> build/lib/MDAnalysisTests/formats creating build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_amber_inpcrd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdbqt.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/reference.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dlpoly.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_namdbin.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gro.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_netcdf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_timestep_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/__init__.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_chemfiles.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/base.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xdr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dcd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_null.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_fhiaims.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_windows.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_reader_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_chainreader.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_writer_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pqr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_crd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_writer_registration.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mmtf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trj.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdb.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_copying.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_h5md.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_lammps.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_txyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_memory.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gsd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mol2.py -> build/lib/MDAnalysisTests/coordinates creating build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/__init__.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/base.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/test_core.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/test_xvg.py -> build/lib/MDAnalysisTests/auxiliary creating build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop_BAD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trz_psf.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/parmed_ala3.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nosegid.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed_NAMD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims2.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/A6PA6_alpha.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/align.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xl_serial.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/charges.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SINGLECONECT.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/elements.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/incomplete.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/CONECT2TER.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/conect_error.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/unordered_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_single.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nucl_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5a7u.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_querypdb.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/conect_parsing.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5digitResid.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/4E43.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1hvr.pdb -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2020-beta2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> build/lib/MDAnalysisTests/data/tprs creating build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.top -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.top -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/adk_oplsaa.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.tpr -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2020-beta2.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/plength.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/grovels.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/huge_box.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty_atom.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/make_whole.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/missing_atomname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/dppc_vesicle_hg.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_nonames.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_widebox.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_multiframe.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap_0base.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sample_velocity_file.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xyz_random_walk.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/surface.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_dihedral.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_rama.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/mol2_comments_header_bat.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_janin.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.crd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/mini.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/five.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ala.ff19SB.OPC.parm7.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/parmed_fad.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/chitosan.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.negative.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_tip3p.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/parmed_ala2_solv.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/parmed_ala2_solv.rst7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.trj -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_tip3p.nc -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.nc -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.nc -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/test.inpcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/adk_open.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1A2C.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bigbox.gro.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/C12x64.xml.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/surface.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/6msm.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDrepeat.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/19hc.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1osm.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/6QYR.mmtf.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDnewres.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1a28.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/fullerene.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5KIH.mmtf.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/testENT.ent -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.fasta -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8_frames10to79.dat -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.dms -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed_no_segid.dms -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed_domains.dms -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/merge creating build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/ligand.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/water.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/protein.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/trzfile.trz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/sodium_ion.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Ligand.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecule_comments_header.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecules.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/zinc_856218.mol2 -> build/lib/MDAnalysisTests/data/mol2 creating build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> build/lib/MDAnalysisTests/data/contacts creating build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/aaqaa.gro -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/ace.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/nma.pdb -> build/lib/MDAnalysisTests/data/capping creating build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/deletedatoms.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/spce_no_coords.lammpstrj.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.in -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/wat.lammpstrj_long.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/albite_triclinic.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/spce_all_coords.lammpstrj.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/wat.lammpstrj.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.trz -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/albite_triclinic.dump -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/mini.data -> build/lib/MDAnalysisTests/data/lammps creating build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/surf2wat.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/symopt.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/c1opt.gms.gz -> build/lib/MDAnalysisTests/data/gms creating build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_minimal -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_order -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_order -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_minimal -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_minimal_cell -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_classic -> build/lib/MDAnalysisTests/data/dlpoly creating build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.arc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_topology.pdb -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.h5md -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.txyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/create_data.py -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/new_hexane.arc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.trr -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/README.md -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/create_h5md_data.py -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xtc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.dcd -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/bad_num_col.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test_lowf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test_highf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1ubq-less-optional.mmtf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/173D.mmtf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/3NJW-onlyrequired.mmtf -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_bound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/1k5i_c36.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/1k5i_c36.psf.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/example_longer.gsd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/example_bonds.gsd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/example.gsd -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_HISTORY -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_wat.lammpstrj -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/README.md -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_test.arc -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_ache.mdcrd -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/atomtypes.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip5p.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/gromacs_ala10.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/itp_nomass.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/edited_itp.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/no_endif_spc.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/spce.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/atomtypes_charge.itp -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/gromacs creating build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/forcefield.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ff_dum.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ffnonbonded.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ions.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/test.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ffbonded.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/spc.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/adk_open.coor -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.h5md -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/fhiaims.in -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/gromacs_ala10.top -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bad_top.top -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/molecule.sdf -> build/lib/MDAnalysisTests/data =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-numpy>=1.16,1<1.26,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.25.0_6,1.pkg [pkg-builder.dan.net.uk] Installing py39-numpy-1.25.0_6,1... 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[pkg-builder.dan.net.uk] | | `-- Extracting suitesparse-colamd-3.3.2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting suitesparse-cholmod-5.2.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting suitesparse-umfpack-6.3.2: .......... done [pkg-builder.dan.net.uk] Extracting py39-numpy-1.25.0_6,1: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> Returning to build of py39-MDAnalysisTests-2.3.0_1 ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-MDAnalysis>0 - not found ===> Installing existing package /packages/All/py39-MDAnalysis-2.3.0_1.pkg [pkg-builder.dan.net.uk] Installing py39-MDAnalysis-2.3.0_1... 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[pkg-builder.dan.net.uk] | | | | `-- Installing gnutls-3.7.10_2... [pkg-builder.dan.net.uk] | | | | | `-- Installing libtasn1-4.19.0_1... [pkg-builder.dan.net.uk] | | | | | `-- Extracting libtasn1-4.19.0_1: .......... done [pkg-builder.dan.net.uk] | | | | | `-- Installing nettle-3.9.1... [pkg-builder.dan.net.uk] | | | | | `-- Extracting nettle-3.9.1: .......... done [pkg-builder.dan.net.uk] | | | | | `-- Installing p11-kit-0.25.3_1... [pkg-builder.dan.net.uk] | | | | | `-- Extracting p11-kit-0.25.3_1: .......... done [pkg-builder.dan.net.uk] | | | | | `-- Installing unbound-1.19.3... ===> Creating groups. Using existing group 'unbound'. ===> Creating users Using existing user 'unbound'. [pkg-builder.dan.net.uk] | | | | | `-- Extracting unbound-1.19.3: .......... done [pkg-builder.dan.net.uk] | | | | `-- Extracting gnutls-3.7.10_2: .......... done [pkg-builder.dan.net.uk] | | | | `-- Installing libassuan-2.5.6... 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[pkg-builder.dan.net.uk] | | `-- Extracting py39-sqlite3-3.9.18_7: ..... done [pkg-builder.dan.net.uk] | | `-- Installing py39-tzdata-2024.1... [pkg-builder.dan.net.uk] | | `-- Extracting py39-tzdata-2024.1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-pandas-2.0.3_1,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-pydot-2.0.0... [pkg-builder.dan.net.uk] | | `-- Installing graphviz-9.0.0_3... [pkg-builder.dan.net.uk] | | `-- Installing libSM-1.2.3_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting libSM-1.2.3_1,1: ........ done [pkg-builder.dan.net.uk] | | `-- Installing libXaw-1.0.14_1,2... [pkg-builder.dan.net.uk] | | | `-- Installing libXmu-1.1.4,1... [pkg-builder.dan.net.uk] | | | `-- Installing libXt-1.3.0,1... [pkg-builder.dan.net.uk] | | | `-- Extracting libXt-1.3.0,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Extracting libXmu-1.1.4,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libXpm-3.5.17_1... [pkg-builder.dan.net.uk] | | | `-- Extracting libXpm-3.5.17_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting libXaw-1.0.14_1,2: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libgd-2.3.3_10,1... [pkg-builder.dan.net.uk] | | `-- Extracting libgd-2.3.3_10,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing libltdl-2.4.7... [pkg-builder.dan.net.uk] | | `-- Extracting libltdl-2.4.7: ......... done [pkg-builder.dan.net.uk] | | `-- Installing pango-1.50.14... [pkg-builder.dan.net.uk] | | | `-- Installing encodings-1.1.0,1... [pkg-builder.dan.net.uk] | | | `-- Extracting encodings-1.1.0,1: .......... done [pkg-builder.dan.net.uk] | | | `-- Installing libthai-0.1.29_1... [pkg-builder.dan.net.uk] | | | `-- Installing libdatrie-0.2.13_2... 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[pkg-builder.dan.net.uk] | | | `-- Extracting font-misc-meltho-1.0.3_5: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting pango-1.50.14: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting graphviz-9.0.0_3: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-pydot-2.0.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-pygraphviz-1.6... [pkg-builder.dan.net.uk] | `-- Extracting py39-pygraphviz-1.6: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-scikit-sparse-0.4.8_8... [pkg-builder.dan.net.uk] | `-- Extracting py39-scikit-sparse-0.4.8_8: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-yaml-6.0.1... [pkg-builder.dan.net.uk] | `-- Extracting py39-yaml-6.0.1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-networkx-3.2,1: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-seaborn-0.13.0... [pkg-builder.dan.net.uk] | `-- Installing py39-patsy-0.5.6... [pkg-builder.dan.net.uk] | `-- Extracting py39-patsy-0.5.6: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-statsmodels-0.14.1... [pkg-builder.dan.net.uk] | `-- Extracting py39-statsmodels-0.14.1: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-seaborn-0.13.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-tqdm-4.66.2... [pkg-builder.dan.net.uk] `-- Extracting py39-tqdm-4.66.2: .......... done [pkg-builder.dan.net.uk] `-- Installing rdkit-2023.09.6... [pkg-builder.dan.net.uk] | `-- Installing coordgenlibs-3.0.2... [pkg-builder.dan.net.uk] | | `-- Installing maeparser-1.3.1_3... [pkg-builder.dan.net.uk] | | `-- Extracting maeparser-1.3.1_3: .......... done [pkg-builder.dan.net.uk] | `-- Extracting coordgenlibs-3.0.2: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-boost-libs-1.84.0... [pkg-builder.dan.net.uk] | `-- Extracting py39-boost-libs-1.84.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting rdkit-2023.09.6: .......... done [pkg-builder.dan.net.uk] Extracting py39-MDAnalysis-2.3.0_1: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from freetype2-2.13.2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from freeglut-3.2.1: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. ===== Message from boost-libs-1.84.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===== Message from postgresql15-client-15.6: -- The PostgreSQL port has a collection of "side orders": postgresql-docs For all of the html documentation p5-Pg A perl5 API for client access to PostgreSQL databases. postgresql-tcltk If you want tcl/tk client support. postgresql-jdbc For Java JDBC support. postgresql-odbc For client access from unix applications using ODBC as access method. Not needed to access unix PostgreSQL servers from Win32 using ODBC. See below. ruby-postgres, py-psycopg2 For client access to PostgreSQL databases using the ruby & python languages. postgresql-plperl, postgresql-pltcl & postgresql-plruby For using perl5, tcl & ruby as procedural languages. postgresql-contrib Lots of contributed utilities, postgresql functions and datatypes. There you find pg_standby, pgcrypto and many other cool things. etc... ===== Message from py39-pandas-2.0.3_1,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. ===== Message from dejavu-2.37_3: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from py39-boost-libs-1.84.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-MDAnalysis>0 - found ===> Returning to build of py39-MDAnalysisTests-2.3.0_1 ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-hypothesis>0 - not found ===> Installing existing package /packages/All/py39-hypothesis-6.98.15.pkg [pkg-builder.dan.net.uk] Installing py39-hypothesis-6.98.15... [pkg-builder.dan.net.uk] `-- Installing py39-attrs-23.2.0... [pkg-builder.dan.net.uk] `-- Extracting py39-attrs-23.2.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-exceptiongroup-1.2.0... [pkg-builder.dan.net.uk] `-- Extracting py39-exceptiongroup-1.2.0: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-rich-13.7.1... [pkg-builder.dan.net.uk] | `-- Installing py39-markdown-it-py-3.0.0... [pkg-builder.dan.net.uk] | | `-- Installing py39-mdurl-0.1.2_2... [pkg-builder.dan.net.uk] | | `-- Extracting py39-mdurl-0.1.2_2: .......... done [pkg-builder.dan.net.uk] | `-- Extracting py39-markdown-it-py-3.0.0: .......... done [pkg-builder.dan.net.uk] | `-- Installing py39-pygments-2.17.2... [pkg-builder.dan.net.uk] | `-- Extracting py39-pygments-2.17.2: .......... done [pkg-builder.dan.net.uk] `-- Extracting py39-rich-13.7.1: .......... done [pkg-builder.dan.net.uk] `-- Installing py39-sortedcontainers-2.4.0... [pkg-builder.dan.net.uk] `-- Extracting py39-sortedcontainers-2.4.0: .......... done [pkg-builder.dan.net.uk] Extracting py39-hypothesis-6.98.15: .......... done ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-hypothesis>0 - found ===> Returning to build of py39-MDAnalysisTests-2.3.0_1 ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py39-MDAnalysisTests-2.3.0_1 ===> Generating temporary packing list running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9 creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/__init__.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/fork_called.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/test_import.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/dummy.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_data.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_diffusionmap.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_persistencelength.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_encore.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/__init__.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rdf_s.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_bat.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_base.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_dielectric.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_contacts.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_gnm.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_waterdynamics.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_msd.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_density.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_lineardensity.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_distances.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hole2.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_nucleicacids.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_nuclinfo.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rdf.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_wbridge.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_leaflet.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_align.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_dihedrals.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_pca.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_helix_analysis.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rms.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_psa.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_util.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/__init__.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_nsgrid.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_augment.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_log.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_cutil.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_neighborsearch.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_distances.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_pkdtree.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/__init__.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_group_traj_access.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segmentgroup.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyobjects.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/__init__.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_fragments.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_wrap.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_updating_atomgroup.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_groups.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_accumulate.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/util.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atom.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_accessors.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residuegroup.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomgroup.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_unwrap.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyattrs.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residue.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_requires.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_copying.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topology.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segment.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomselections.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_index_dtype.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_universe.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_positionaveraging.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/__init__.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_base.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_wrap.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_translate.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_rotate.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_fit.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_boxdimensions.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_guessers.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_tprparser.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_altloc.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_minimal.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdbqt.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_hoomdxml.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dlpoly.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_lammpsdata.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gro.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dms.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/__init__.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/base.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_itp.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gms.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_fhiaims.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xyz.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_top.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xpdb.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pqr.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_psf.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_crd.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_base.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mmtf.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdb.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_str_types.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_txyz.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gsd.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mol2.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/__init__.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/test_streamlines.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/util.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_meta.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_transformations.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_duecredit.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_failure.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/__init__.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_log.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_datafiles.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_authors.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_imports.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_qcprot.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_modelling.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_pickleio.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_units.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_persistence.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_streamio.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_selections.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/datafiles.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libdcd.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/__init__.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libmdaxdr.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/test_api.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/A6PA6_alpha.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims.dcd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.trr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/plength.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.trr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/grovels.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.dcd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.xtc -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/align.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/huge_box.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/bigbox.gro.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/C12x64.xml.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2020-beta2.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2020-beta2.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.top -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.top -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/bad_num_col.xvg -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/mini.xyz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty_atom.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop_BAD.psf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/atomtypes.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_bound.pdb.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/1k5i_c36.pdb.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/1k5i_c36.psf.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.data -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/deletedatoms.data -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/spce_no_coords.lammpstrj.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.in -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/wat.lammpstrj_long.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/albite_triclinic.data -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/spce_all_coords.lammpstrj.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/wat.lammpstrj.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.trz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/albite_triclinic.dump -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/mini.data -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.crd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/make_whole.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip5p.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xl_serial.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims2.dcd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/example_longer.gsd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.psf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/gromacs_ala10.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_dihedral.npy -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_tip3p.nc -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.nc -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.prmtop -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/parmed_fad.prmtop -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti.top -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.trj -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/chitosan.prmtop -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.parm7 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.negative.parm7 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_tip3p.parm7 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.prmtop -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/parmed_ala2_solv.rst7 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.top -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.ncdf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.prmtop -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/parmed_ala2_solv.parm7 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ala.ff19SB.OPC.parm7.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.nc -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/test.inpcrd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.ncdf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/charges.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_rama.npy -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trz_psf.psf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/itp_nomass.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/chainIDrepeat.pdb.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xyz_random_walk.xtc -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/parmed_ala3.psf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/five.xyz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/edited_itp.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/ace.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/aaqaa.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/nma.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/capping creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/SINGLECONECT.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/elements.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/molecule.sdf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty.dcd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/gromacs_ala10.top -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.dms -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/19hc.pdb.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pqr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/missing_atomname.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/surface.pdb.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/testENT.ent -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/merge creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/ligand.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/water.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/protein.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/mol2_comments_header_bat.npy -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_janin.npy -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/dppc_vesicle_hg.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1ubq-less-optional.mmtf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_lowf.xvg -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/6msm.pdb.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_nonames.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed_no_segid.dms -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/fhiaims.in -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/incomplete.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/bad_top.top -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop.psf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1osm.pdb.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/6QYR.mmtf.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/no_endif_spc.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.psf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/residwrap.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/CONECT2TER.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.fasta -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/conect_error.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.arc -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_topology.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.h5md -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.txyz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/create_data.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/new_hexane.arc -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.trr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/README.md -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/create_h5md_data.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xtc -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz.bz2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.dcd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/chainIDnewres.pdb.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1a28.pdb.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.xtc -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_HISTORY -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_wat.lammpstrj -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/README.md -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_test.arc -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_ache.mdcrd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8_frames10to79.dat -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/173D.mmtf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/c1opt.gms.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/surf2wat.gms -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/symopt.gms -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/trzfile.trz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/unordered_res.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/surface.trr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_widebox.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.psf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.coor -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.xvg -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_single.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nosegid.psf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_highf.xvg -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1A2C.pqr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nucl_res.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5a7u.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/3NJW-onlyrequired.mmtf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.h5md -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.dcd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed_NAMD.psf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/fullerene.pdb.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/pdbqt_querypdb.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_multiframe.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/forcefield.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ff_dum.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ffnonbonded.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ions.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/test.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ffbonded.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/spc.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_order -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_minimal -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_minimal_cell -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_minimal -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_classic -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_order -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/residwrap_0base.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/conect_parsing.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.psf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.dcd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sample_velocity_file.gro -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5digitResid.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/4E43.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/spce.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/example_bonds.gsd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5KIH.mmtf.gz -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecule.mol2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/sodium_ion.mol2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Ligand.mol2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecule_comments_header.mol2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecules.mol2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/zinc_856218.mol2 -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/SiN_tric_namd.psf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed_domains.dms -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/atomtypes_charge.itp -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/example.gsd -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1hvr.pdb -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk.psf -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.tpr -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trz.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_amber_inpcrd.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdbqt.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/reference.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dlpoly.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_namdbin.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gro.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_netcdf.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dms.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_timestep_api.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/__init__.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_chemfiles.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/base.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xdr.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dcd.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_null.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gms.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_fhiaims.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_windows.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_reader_api.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xyz.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_chainreader.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_writer_api.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pqr.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_crd.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_writer_registration.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mmtf.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trj.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdb.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_copying.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_h5md.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_lammps.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_txyz.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_memory.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gsd.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mol2.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates creating /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/__init__.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/base.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/test_core.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/test_xvg.py -> /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import/fork_called.py to fork_called.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import/test_import.py to test_import.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/dummy.py to dummy.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_data.py to test_data.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py to test_hydrogenbondautocorrel.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_diffusionmap.py to test_diffusionmap.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_persistencelength.py to test_persistencelength.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_encore.py to test_encore.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_rdf_s.py to test_rdf_s.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py to test_hydrogenbonds_analysis.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_bat.py to test_bat.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_base.py to test_base.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_dielectric.py to test_dielectric.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_contacts.py to test_contacts.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_gnm.py to test_gnm.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_waterdynamics.py to test_waterdynamics.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_msd.py to test_msd.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_density.py to test_density.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_lineardensity.py to test_lineardensity.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_distances.py to test_distances.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_hole2.py to test_hole2.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_nucleicacids.py to test_nucleicacids.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_nuclinfo.py to test_nuclinfo.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_rdf.py to test_rdf.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_wbridge.py to test_wbridge.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_leaflet.py to test_leaflet.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_align.py to test_align.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_dihedrals.py to test_dihedrals.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_pca.py to test_pca.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py to test_hydrogenbondautocorrel_deprecated.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_helix_analysis.py to test_helix_analysis.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_rms.py to test_rms.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_psa.py to test_psa.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_util.py to test_util.cpython-39.pyc /usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_util.py:2209: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_nsgrid.py to test_nsgrid.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_augment.py to test_augment.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_log.py to test_log.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_cutil.py to test_cutil.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_neighborsearch.py to test_neighborsearch.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_distances.py to test_distances.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_pkdtree.py to test_pkdtree.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_group_traj_access.py to test_group_traj_access.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_segmentgroup.py to test_segmentgroup.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_topologyobjects.py to test_topologyobjects.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_fragments.py to test_fragments.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_wrap.py to test_wrap.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_updating_atomgroup.py to test_updating_atomgroup.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_groups.py to test_groups.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_accumulate.py to test_accumulate.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/util.py to util.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_atom.py to test_atom.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_accessors.py to test_accessors.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_residuegroup.py to test_residuegroup.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_atomgroup.py to test_atomgroup.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_unwrap.py to test_unwrap.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_topologyattrs.py to test_topologyattrs.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_residue.py to test_residue.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_requires.py to test_requires.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_copying.py to test_copying.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_topology.py to test_topology.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_segment.py to test_segment.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_atomselections.py to test_atomselections.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_index_dtype.py to test_index_dtype.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_universe.py to test_universe.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_positionaveraging.py to test_positionaveraging.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_base.py to test_base.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_wrap.py to test_wrap.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_translate.py to test_translate.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_rotate.py to test_rotate.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_fit.py to test_fit.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_boxdimensions.py to test_boxdimensions.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_guessers.py to test_guessers.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_tprparser.py to test_tprparser.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_altloc.py to test_altloc.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_minimal.py to test_minimal.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_pdbqt.py to test_pdbqt.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_hoomdxml.py to test_hoomdxml.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_dlpoly.py to test_dlpoly.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_lammpsdata.py to test_lammpsdata.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_gro.py to test_gro.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_dms.py to test_dms.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/base.py to base.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_itp.py to test_itp.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_gms.py to test_gms.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_fhiaims.py to test_fhiaims.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_xyz.py to test_xyz.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_top.py to test_top.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_xpdb.py to test_xpdb.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_pqr.py to test_pqr.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_psf.py to test_psf.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_crd.py to test_crd.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_topology_base.py to test_topology_base.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_mmtf.py to test_mmtf.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_pdb.py to test_pdb.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_topology_str_types.py to test_topology_str_types.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_txyz.py to test_txyz.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_gsd.py to test_gsd.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_mol2.py to test_mol2.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/visualization/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/visualization/test_streamlines.py to test_streamlines.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/util.py to util.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_meta.py to test_meta.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_transformations.py to test_transformations.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_duecredit.py to test_duecredit.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_failure.py to test_failure.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_log.py to test_log.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_datafiles.py to test_datafiles.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_authors.py to test_authors.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_imports.py to test_imports.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_qcprot.py to test_qcprot.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_modelling.py to test_modelling.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_pickleio.py to test_pickleio.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_units.py to test_units.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_persistence.py to test_persistence.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_streamio.py to test_streamio.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_selections.py to test_selections.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/datafiles.py to datafiles.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats/test_libdcd.py to test_libdcd.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats/test_libmdaxdr.py to test_libmdaxdr.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/test_api.py to test_api.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates/create_data.py to create_data.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates/create_h5md_data.py to create_h5md_data.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_trz.py to test_trz.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_amber_inpcrd.py to test_amber_inpcrd.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_pdbqt.py to test_pdbqt.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/reference.py to reference.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_dlpoly.py to test_dlpoly.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_namdbin.py to test_namdbin.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_gro.py to test_gro.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_netcdf.py to test_netcdf.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_dms.py to test_dms.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_timestep_api.py to test_timestep_api.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_chemfiles.py to test_chemfiles.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/base.py to base.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_xdr.py to test_xdr.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_dcd.py to test_dcd.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_null.py to test_null.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_gms.py to test_gms.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_fhiaims.py to test_fhiaims.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_windows.py to test_windows.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_reader_api.py to test_reader_api.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_xyz.py to test_xyz.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_chainreader.py to test_chainreader.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_writer_api.py to test_writer_api.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_pqr.py to test_pqr.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_crd.py to test_crd.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_writer_registration.py to test_writer_registration.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_mmtf.py to test_mmtf.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_trj.py to test_trj.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_pdb.py to test_pdb.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_copying.py to test_copying.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_h5md.py to test_h5md.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_lammps.py to test_lammps.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_txyz.py to test_txyz.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_memory.py to test_memory.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_gsd.py to test_gsd.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_mol2.py to test_mol2.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary/__init__.py to __init__.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary/base.py to base.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary/test_core.py to test_core.cpython-39.pyc byte-compiling /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary/test_xvg.py to test_xvg.cpython-39.pyc writing byte-compilation script '/tmp/tmpz6qx2ee7.py' /usr/local/bin/python3.9 /tmp/tmpz6qx2ee7.py /usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_util.py:2209: SyntaxWarning: "is" with a literal. Did you mean "=="? removing /tmp/tmpz6qx2ee7.py running install_egg_info running egg_info writing MDAnalysisTests.egg-info/PKG-INFO writing dependency_links to MDAnalysisTests.egg-info/dependency_links.txt writing requirements to MDAnalysisTests.egg-info/requires.txt writing top-level names to MDAnalysisTests.egg-info/top_level.txt reading manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'TODO' warning: no files found matching 'SUMMARY.txt' warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '*.pkl' found anywhere in distribution adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' Copying MDAnalysisTests.egg-info to /wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests-2.3.0-py3.9.egg-info running install_scripts writing list of installed files to '/wrkdirs/usr/ports/science/py-MDAnalysisTests/work-py39/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-04-02T11:19:31+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=3d9a815d9c' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py39-MDAnalysisTests-2.3.0_1 ===> Building py39-MDAnalysisTests-2.3.0_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py39-MDAnalysisTests-2.3.0_1 build of science/py-MDAnalysisTests@py39 | py39-MDAnalysisTests-2.3.0_1 ended at Tue Apr 2 12:42:27 BST 2024 build time: 00:22:59