=>> Building science/nifticlib build started at Fri Mar 29 21:52:18 GMT 2024 port directory: /usr/ports/science/nifticlib package name: nifticlib-2.0.0_2 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 748 Jan 25 05:29 /usr/ports/science/nifticlib/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: d813f83ea2 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 18 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/18/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/nifticlib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/nifticlib/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/nifticlib/work/.cache HOME=/wrkdirs/usr/ports/science/nifticlib/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/nifticlib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/nifticlib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCACHE_DIR="/root/.ccache" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/nifticlib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/nifticlib/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/nifticlib/work/.cache HOME=/wrkdirs/usr/ports/science/nifticlib/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/nifticlib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/nifticlib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/nifticlib" EXAMPLESDIR="share/examples/nifticlib" DATADIR="share/nifticlib" WWWDIR="www/nifticlib" ETCDIR="etc/nifticlib" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/nifticlib DOCSDIR=/usr/local/share/doc/nifticlib EXAMPLESDIR=/usr/local/share/examples/nifticlib WWWDIR=/usr/local/www/nifticlib ETCDIR=/usr/local/etc/nifticlib --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> nifticlib-2.0.0_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> nifticlib-2.0.0_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of nifticlib-2.0.0_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by nifticlib-2.0.0_2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by nifticlib-2.0.0_2 for building => SHA256 Checksum OK for nifticlib-2.0.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by nifticlib-2.0.0_2 for building ===> Extracting for nifticlib-2.0.0_2 => SHA256 Checksum OK for nifticlib-2.0.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for nifticlib-2.0.0_2 ===> Applying FreeBSD patches for nifticlib-2.0.0_2 from /usr/ports/science/nifticlib/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> nifticlib-2.0.0_2 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg-builder.dan.net.uk] Installing gmake-4.4.1... [pkg-builder.dan.net.uk] `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] Extracting gmake-4.4.1: .......... done ===> nifticlib-2.0.0_2 depends on package: gmake>=4.4.1 - found ===> Returning to build of nifticlib-2.0.0_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for nifticlib-2.0.0_2 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for nifticlib-2.0.0_2 echo "arch is " arch is gmake -C znzlib depend lib gmake[1]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/znzlib' cc -MM -I/usr/include znzlib.c >> depend.mk rm -f -f depend.mk gmake depend.mk gmake[2]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/znzlib' cc -MM -I/usr/include znzlib.c >> depend.mk gmake[2]: 'depend.mk' is up to date. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/znzlib' cc -c -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -ansi -pedantic -ansi -pedantic -DHAVE_ZLIB -I/usr/include znzlib.c ar -r libznz.a znzlib.o ar: warning: creating libznz.a ranlib libznz.a mkdir -p lib gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/znzlib' ----------- znzlib build completed. gmake -C niftilib depend lib gmake[1]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/niftilib' cc -MM -I/usr/include -I../znzlib nifti1_io.c >> depend.mk rm -f -f depend.mk gmake depend.mk gmake[2]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/niftilib' cc -MM -I/usr/include -I../znzlib nifti1_io.c >> depend.mk gmake[2]: 'depend.mk' is up to date. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/niftilib' cc -c -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -ansi -pedantic -ansi -pedantic -DHAVE_ZLIB -I/usr/include -I../znzlib nifti1_io.c nifti1_io.c:538:15: warning: format specifies type 'void *' but the argument has type 'const char *' [-Wformat-pedantic] hname, (void *)NBL); ^~~~~ nifti1_io.c:3061:27: warning: format specifies type 'void *' but the argument has type 'const char *' [-Wformat-pedantic] (void *)nim,prefix); ^~~~~~ nifti1_io.c:3386:15: warning: format specifies type 'void *' but the argument has type 'char *' [-Wformat-pedantic] nim->fname, nim->iname); ^~~~~~~~~~ nifti1_io.c:3386:27: warning: format specifies type 'void *' but the argument has type 'char *' [-Wformat-pedantic] nim->fname, nim->iname); ^~~~~~~~~~ nifti1_io.c:4544:28: warning: format specifies type 'void *' but the argument has type 'const char *' [-Wformat-pedantic] (void *)ext, data, len); ^~~~ nifti1_io.c:4792:23: warning: format specifies type 'void *' but the argument has type 'char *' [-Wformat-pedantic] nim->iname, nim->nbyper, (unsigned)nim->nvox); ^~~~~~~~~~ 6 warnings generated. ar -r libniftiio.a nifti1_io.o ar: warning: creating libniftiio.a ranlib libniftiio.a mkdir -p lib gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/niftilib' ----------- niftilib build completed. gmake -C nifticdf depend lib gmake[1]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/nifticdf' cc -MM -I../niftilib -I../nifticdf nifticdf.c >> depend.mk rm -f -f depend.mk gmake depend.mk gmake[2]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/nifticdf' cc -MM -I../niftilib -I../nifticdf nifticdf.c >> depend.mk gmake[2]: 'depend.mk' is up to date. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/nifticdf' cc -c -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -ansi -pedantic -ansi -pedantic -DHAVE_ZLIB -I../niftilib -I../nifticdf nifticdf.c nifticdf.c:10867:41: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] pq.q = exp(-abs(val)) ; pq.p = 1.0-pq.q; break; ^ nifticdf.c:10867:41: note: use function 'fabs' instead pq.q = exp(-abs(val)) ; pq.p = 1.0-pq.q; break; ^~~ fabs nifticdf.c:10869:45: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] pq.q = pow(10.,-abs(val)); pq.p = 1.0-pq.q; break; ^ nifticdf.c:10869:45: note: use function 'fabs' instead pq.q = pow(10.,-abs(val)); pq.p = 1.0-pq.q; break; ^~~ fabs 2 warnings generated. ar -r libnifticdf.a nifticdf.o ar: warning: creating libnifticdf.a ranlib libnifticdf.a mkdir -p lib gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/nifticdf' ----------- nifticdf build completed. gmake -C fsliolib depend lib gmake[1]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/fsliolib' cc -MM -I/usr/include -I../znzlib -I../niftilib fslio.c >> depend.mk rm -f -f depend.mk gmake depend.mk gmake[2]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/fsliolib' cc -MM -I/usr/include -I../znzlib -I../niftilib fslio.c >> depend.mk gmake[2]: 'depend.mk' is up to date. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/fsliolib' cc -c -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -ansi -pedantic -ansi -pedantic -I/usr/include -I../znzlib -I../niftilib fslio.c ar -r libfslio.a fslio.o ar: warning: creating libfslio.a mkdir -p lib gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/fsliolib' ---------- fsliolib build completed. (cp znzlib/*.a lib; cp znzlib/*.h include;) ranlib lib/*.a znzlib installed. (cp niftilib/*.a lib; cp niftilib/*.h include;) ranlib lib/*.a niftilib installed. (cp nifticdf/*.a lib; cp nifticdf/*.h include;) ranlib lib/*.a niftilib installed. (cp fsliolib/*.a lib; cp fsliolib/*.h include;) ranlib lib/*.a fsliolib installed. gmake -C utils all gmake[1]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/utils' cc -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -ansi -pedantic -o nifti_stats nifti_stats.c -I../include -I/usr/include -L../lib -lnifticdf -L../lib -lniftiio -L/usr/lib -L../lib -lznz -lm -lz cc -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -ansi -pedantic -Wall -o nifti_tool nifti_tool.c -I../include -I/usr/include -L../lib -lniftiio -L/usr/lib -L../lib -lznz -lm -lz cc -O2 -pipe -fPIC -fstack-protector-strong -fno-strict-aliasing -ansi -pedantic -o nifti1_test nifti1_test.c -I../include -I/usr/include -L../lib -lniftiio -L/usr/lib -L../lib -lznz -lm -lz gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/utils' Utility programs built. (cd utils; cp nifti_stats nifti_tool nifti1_test ../bin;) utils installed. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for nifticlib-2.0.0_2 ===> Generating temporary packing list install -s -m 555 /wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/bin/* /wrkdirs/usr/ports/science/nifticlib/work/stage/usr/local/bin install -m 0644 /wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/lib/*.a /wrkdirs/usr/ports/science/nifticlib/work/stage/usr/local/lib install -m 0644 /wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/include/*.h /wrkdirs/usr/ports/science/nifticlib/work/stage/usr/local/include install -m 444 /usr/ports/science/nifticlib/files/nifticlib.1 /wrkdirs/usr/ports/science/nifticlib/work/stage/usr/local/share/man/man1 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-03-29T21:52:18+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=d813f83ea2' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for nifticlib-2.0.0_2 ===> Building nifticlib-2.0.0_2 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for nifticlib-2.0.0_2 build of science/nifticlib | nifticlib-2.0.0_2 ended at Fri Mar 29 21:52:38 GMT 2024 build time: 00:00:20