=>> Building biology/migrate build started at Sun Mar 31 20:17:56 BST 2024 port directory: /usr/ports/biology/migrate package name: migrate-3.6.11_1 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: ports@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1960 Jan 11 20:37 /usr/ports/biology/migrate/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: e10e2022a9 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 15 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/15/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for migrate-3.6.11_1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples THREAD=off: Build with THREAD support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- ports@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_prog_GMAKE="/usr/bin/make" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/migrate/work/.cache HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/biology/migrate/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/migrate/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCACHE_DIR="/root/.ccache" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/migrate/work/.cache HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/biology/migrate/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/migrate/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/migrate" EXAMPLESDIR="share/examples/migrate" DATADIR="share/migrate" WWWDIR="www/migrate" ETCDIR="etc/migrate" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/migrate DOCSDIR=/usr/local/share/doc/migrate EXAMPLESDIR=/usr/local/share/examples/migrate WWWDIR=/usr/local/www/migrate ETCDIR=/usr/local/etc/migrate --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: The migrate port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> migrate-3.6.11_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> migrate-3.6.11_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of migrate-3.6.11_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: The migrate port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> Fetching all distfiles required by migrate-3.6.11_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: The migrate port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> Fetching all distfiles required by migrate-3.6.11_1 for building => SHA256 Checksum OK for migrate-3.6.11.src.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: The migrate port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> Fetching all distfiles required by migrate-3.6.11_1 for building ===> Extracting for migrate-3.6.11_1 => SHA256 Checksum OK for migrate-3.6.11.src.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for migrate-3.6.11_1 ===> Applying FreeBSD patches for migrate-3.6.11_1 from /usr/ports/biology/migrate/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for migrate-3.6.11_1 configure: loading site script /usr/ports/Templates/config.site checking build system type... amd64-portbld-freebsd13.2 checking host system type... amd64-portbld-freebsd13.2 checking target system type... amd64-portbld-freebsd13.2 ./configure: USERFLAGS+=-O2: not found checking for gmake... (cached) /usr/bin/make ======================================================================= Migrate subversion: Hardware: portbld System OS: freebsd13.2 FreeBSD System CPU: amd64 ----------------------------------------------------------------------- checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes ./configure: CFLAGS+=: not found C-compiler: cc C++-compiler:c++ CFLAGS: -O2 -pipe -fstack-protector-strong -fno-strict-aliasing ======================================================================= checking for a BSD-compatible install... /usr/bin/install -c checking for pthread_create in -lpthread... yes checking for MPI_Init in -lmpi... no checking for exp in -lm... yes checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for limits.h... (cached) yes checking for strings.h... (cached) yes checking for pthread.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... (cached) yes checking for int... (cached) yes checking whether struct tm is in sys/time.h or time.h... time.h checking for inline... inline checking return type of signal handlers... void checking for strftime... (cached) yes checking for strcspn... (cached) yes checking for strsep... (cached) yes checking for lgamma... yes checking which zlib implementation to use... autodetect checking for main in -lz... yes checking for gzbuffer... no configure: creating ./config.status config.status: creating Makefile config.status: creating conf.h config.status: conf.h is unchanged MIGRATE-N is now setup to compile the program you need to type one of the commands below (ordered by preference): SINGLE CPU machines make # with PDF output support # this might fail on first attempt, # if the make fails, please let me know # often linking fails because the C++ pdf library # and the core migrate parts (C) mismatch # check the Makefile line for STDLIB= -lstdc++ SMP machines more than 1 CPU in machine make thread # uses the thread library if present make # on macs running macos 10.6+ using GrandCentral PARALLEL Computers, Clusters with MPI software make mpis # each cpu-core can be treated as a node make mpis-thread # experimental, may increase load per node! ------------------------------------------------------------------------ SPEED and other TESTING the migrate website contains a testsuite.tar.gz that has many tests for single, parallel and thread compilations the tests are driven by a python script rt (see the README in the testsuite) and a submit script that allows to streamline submissions to a batch queue system, currently supported systems are SUN/ORACLE GRIDENGINE, TORQUE/MOAB, and NONE ------------------------------------------------------------------------ In case there are problems with the compile send a message to the migrate-support@google.com usergroup, include a log of ./configure make ======================================================================= =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for migrate-3.6.11_1 (cd ./haru ; /usr/bin/make -f makefile.gcc "CC=c++" "CPP=cc" "ARCH=" "MACOSVERSION=" "MYCPPFLAGS=-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ ") cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfExceptions.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfList.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfUtils.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfStreams.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfAutoPtrObjects.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfObjects.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfContents.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfPages.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFonts.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfXref.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfDestinations.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfOutlines.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfBorderStyle.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfAnnotations.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfDoc.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCatalog.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfInfo.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncoding.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfXObjects.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_Courier.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_Helvetica.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_Times.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_Symbol.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfFontDef_ZapfDingbats.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncoding_ISO8859.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncoding_KOI8.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncoding_MSCP.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFonts.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] PdfMbFonts.cc:260:9: warning: 'delete[]' applied to a pointer that was allocated with 'new'; did you mean 'delete'? [-Wmismatched-new-delete] delete[] w; ^ ~~ PdfMbFonts.cc:247:24: note: allocated with 'new' here pdf_cid_width* w = new pdf_cid_width; ^ PdfMbFonts.cc:270:9: warning: 'delete[]' applied to a pointer that was allocated with 'new'; did you mean 'delete'? [-Wmismatched-new-delete] delete[] w; ^ ~~ PdfMbFonts.cc:247:24: note: allocated with 'new' here pdf_cid_width* w = new pdf_cid_width; ^ PdfMbFonts.cc:300:9: warning: 'delete[]' applied to a pointer that was allocated with 'new'; did you mean 'delete'? [-Wmismatched-new-delete] delete[] w; ^ ~~ PdfMbFonts.cc:284:24: note: allocated with 'new' here pdf_cid_width* w = new pdf_cid_width; ^ PdfMbFonts.cc:311:9: warning: 'delete[]' applied to a pointer that was allocated with 'new'; did you mean 'delete'? [-Wmismatched-new-delete] delete[] w; ^ ~~ PdfMbFonts.cc:284:24: note: allocated with 'new' here pdf_cid_width* w = new pdf_cid_width; ^ 4 warnings generated. cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] PdfCMap.cc:207:9: warning: 'delete' applied to a pointer that was allocated with 'new[]'; did you mean 'delete[]'? [-Wmismatched-new-delete] delete btype; ^ [] PdfCMap.cc:175:28: note: allocated with 'new[]' here pdf_byte_type* btype = new pdf_byte_type[srclen]; ^ PdfCMap.cc:210:5: warning: 'delete' applied to a pointer that was allocated with 'new[]'; did you mean 'delete[]'? [-Wmismatched-new-delete] delete btype; ^ [] PdfCMap.cc:175:28: note: allocated with 'new[]' here pdf_byte_type* btype = new pdf_byte_type[srclen]; ^ 2 warnings generated. cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfUnicodeText.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Gothic.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Mincyo.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_SimHei.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_SimSun.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Ming.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Batang.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfMbFontDef_Dotum.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_RKSJ.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_EUC.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_GB_EUC.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_ETen_B5.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_KSCms_UHC.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfCMap_KSC_EUC.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfPngImage.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfJpegImage.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c PdfEncrypt.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc_jpfonts.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc_krfonts.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc_cnsfonts.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharuc_cntfonts.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharu_png.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -I. -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c libharu_jpeg.cc cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] ar rc libharu.a PdfExceptions.o PdfList.o PdfUtils.o PdfStreams.o PdfAutoPtrObjects.o PdfObjects.o PdfContents.o PdfPages.o PdfFonts.o PdfXref.o PdfDestinations.o PdfOutlines.o PdfBorderStyle.o PdfAnnotations.o PdfDoc.o PdfCatalog.o PdfInfo.o PdfEncoding.o PdfFontDef.o PdfXObjects.o PdfFontDef_Courier.o PdfFontDef_Helvetica.o PdfFontDef_Times.o PdfFontDef_Symbol.o PdfFontDef_ZapfDingbats.o PdfEncoding_ISO8859.o PdfEncoding_KOI8.o PdfEncoding_MSCP.o PdfMbFonts.o PdfCMap.o PdfUnicodeText.o PdfMbFontDef_Gothic.o PdfMbFontDef_Mincyo.o PdfMbFontDef_SimHei.o PdfMbFontDef_SimSun.o PdfMbFontDef_Ming.o PdfMbFontDef_Batang.o PdfMbFontDef_Dotum.o PdfCMap_RKSJ.o PdfCMap_EUC.o PdfCMap_GB_EUC.o PdfCMap_ETen_B5.o PdfCMap_KSCms_UHC.o PdfCMap_KSC_EUC.o PdfPngImage.o PdfJpegImage.o PdfEncrypt.o libharuc.o libharuc_jpfonts.o libharuc_krfonts.o libharuc_cnsfonts.o libharuc_cntfonts.o libharu_png.o libharu_jpeg.o ranlib libharu.a Using system zlib architecture /usr/bin/make migrate-n "CFLAGS = -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION=\"\\\"June-18-15\\\"\" -DMIGRATEVERSION=\"\\\"3.6.11\\\"\" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++" "LIBS = -Lharu -lharu -lz -lm" "LDFLAGS = " cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c aic.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c altivec.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c autotune.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c bayes.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c broyden.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c calculator.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c combroyden2.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c data.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c correlation.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c gammalike.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c fst.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c heating.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c histogram.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c inthp.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c joint-chains.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c laguerre.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c lrt.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c main.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c migrate_mpi.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c mutationmodel.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c mcmc1.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c mcmc2.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c menu.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c migevents.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c options.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c priors.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c profile.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c random.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c reporter.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c spline.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c tools.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c tree.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c sequence.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c sighandler.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c slice.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c sort.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c uep.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c world.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c pretty.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c skyline.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c watterson.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c znzlib.c cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -c pretty-win32.cpp cc: warning: -Z-reserved-lib-stdc++: 'linker' input unused [-Wunused-command-line-argument] cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNEXUSTREE -DHAVE_ZLIB -DZNZ -DHIGHBITS -DHAVE_CONFIG_H -DHAVE_MALLOCWRAP -DMERSENNE_TWISTER -DMEXP=19937 -DMIGRATESUBVERSION="\"June-18-15\"" -DMIGRATEVERSION="\"3.6.11\"" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ -o migrate-n aic.o altivec.o autotune.o bayes.o broyden.o calculator.o combroyden2.o data.o correlation.o gammalike.o fst.o heating.o histogram.o inthp.o joint-chains.o laguerre.o lrt.o main.o migrate_mpi.o mutationmodel.o mcmc1.o mcmc2.o menu.o migevents.o options.o priors.o profile.o random.o reporter.o spline.o tools.o tree.o sequence.o sighandler.o slice.o sort.o uep.o world.o pretty.o skyline.o watterson.o znzlib.o pretty-win32.o -Lharu -lharu -lz -lm ; =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for migrate-3.6.11_1 ===> Generating temporary packing list install -s -m 555 /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src/migrate-n /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/bin /bin/ln -sf migrate-n /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/bin/migrate install -m 444 /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src/migrate.1 /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/share/man/man1 /bin/ln -sf migrate.1 /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/share/man/man1/migrate-n.1 install -m 0644 /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src/../HISTORY /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src/../README /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src/../README_PARALLEL_GENERAL /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src/../migrate.html /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/share/doc/migrate install -m 0644 /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src/../graphics/* /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/share/doc/migrate/graphics install -m 0644 /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src/../example/[A-Za-z]* /wrkdirs/usr/ports/biology/migrate/work/stage/usr/local/share/examples/migrate ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-03-31T19:17:56+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=e10e2022a9' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for migrate-3.6.11_1 ===> Building migrate-3.6.11_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for migrate-3.6.11_1 build of biology/migrate | migrate-3.6.11_1 ended at Sun Mar 31 20:20:15 BST 2024 build time: 00:02:20