=>> Building science/chemicalfun build started at Fri Mar 29 12:54:39 GMT 2024 port directory: /usr/ports/science/chemicalfun package name: chemicalfun-0.1.8_2 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2174 Dec 19 14:17 /usr/ports/science/chemicalfun/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: ec5f6e2261 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 01 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for chemicalfun-0.1.8_2: PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/chemicalfun/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/chemicalfun/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/chemicalfun/work/.cache HOME=/wrkdirs/usr/ports/science/chemicalfun/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/chemicalfun/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/chemicalfun/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CCACHE_DIR="/root/.ccache" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/chemicalfun/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/chemicalfun/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/chemicalfun/work/.cache HOME=/wrkdirs/usr/ports/science/chemicalfun/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/chemicalfun/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/chemicalfun/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/chemicalfun/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -lfmt -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/chemicalfun" EXAMPLESDIR="share/examples/chemicalfun" DATADIR="share/chemicalfun" WWWDIR="www/chemicalfun" ETCDIR="etc/chemicalfun" --End PLIST_SUB-- --SUB_LIST-- PYTHON="" NO_PYTHON="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/chemicalfun DOCSDIR=/usr/local/share/doc/chemicalfun EXAMPLESDIR=/usr/local/share/examples/chemicalfun WWWDIR=/usr/local/www/chemicalfun ETCDIR=/usr/local/etc/chemicalfun --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> chemicalfun-0.1.8_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> chemicalfun-0.1.8_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of chemicalfun-0.1.8_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by chemicalfun-0.1.8_2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by chemicalfun-0.1.8_2 for building => SHA256 Checksum OK for chemicalfun-0.1.8.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by chemicalfun-0.1.8_2 for building ===> Extracting for chemicalfun-0.1.8_2 => SHA256 Checksum OK for chemicalfun-0.1.8.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for chemicalfun-0.1.8_2 ===> Applying FreeBSD patches for chemicalfun-0.1.8_2 from /usr/ports/science/chemicalfun/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> chemicalfun-0.1.8_2 depends on package: nlohmann-json>0 - not found ===> Installing existing package /packages/All/nlohmann-json-3.11.3.pkg [pkg-builder.dan.net.uk] Installing nlohmann-json-3.11.3... [pkg-builder.dan.net.uk] Extracting nlohmann-json-3.11.3: .......... done ===> chemicalfun-0.1.8_2 depends on package: nlohmann-json>0 - found ===> Returning to build of chemicalfun-0.1.8_2 ===> chemicalfun-0.1.8_2 depends on package: py39-wheel>0 - not found ===> Installing existing package /packages/All/py39-wheel-0.43.0.pkg [pkg-builder.dan.net.uk] Installing py39-wheel-0.43.0... [pkg-builder.dan.net.uk] `-- Installing python39-3.9.18_1... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.4_1... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.4_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-2.5.1... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-2.5.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing openssl-3.0.13_1,1... [pkg-builder.dan.net.uk] | `-- Extracting openssl-3.0.13_1,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.10... [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.10: .......... done [pkg-builder.dan.net.uk] `-- Extracting python39-3.9.18_1: .......... done [pkg-builder.dan.net.uk] Extracting py39-wheel-0.43.0: .......... done ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> chemicalfun-0.1.8_2 depends on package: py39-wheel>0 - found ===> Returning to build of chemicalfun-0.1.8_2 ===> chemicalfun-0.1.8_2 depends on package: py39-pip>0 - not found ===> Installing existing package /packages/All/py39-pip-23.3.2_1.pkg [pkg-builder.dan.net.uk] Installing py39-pip-23.3.2_1... [pkg-builder.dan.net.uk] `-- Installing py39-setuptools-63.1.0_1... [pkg-builder.dan.net.uk] `-- Extracting py39-setuptools-63.1.0_1: .......... done [pkg-builder.dan.net.uk] Extracting py39-pip-23.3.2_1: .......... done ===== Message from py39-pip-23.3.2_1: -- pip MUST ONLY be used: * With the --user flag, OR * To install or manage Python packages in virtual environments Failure to follow this warning can and will result in an inconsistent system-wide Python environment (LOCALBASE/lib/pythonX.Y/site-packages) and cause errors. Avoid using pip as root unless you know what you're doing. ===> chemicalfun-0.1.8_2 depends on package: py39-pip>0 - found ===> Returning to build of chemicalfun-0.1.8_2 ===> chemicalfun-0.1.8_2 depends on package: pybind11>0 - not found ===> Installing existing package /packages/All/pybind11-2.11.1.pkg [pkg-builder.dan.net.uk] Installing pybind11-2.11.1... [pkg-builder.dan.net.uk] Extracting pybind11-2.11.1: .......... done ===> chemicalfun-0.1.8_2 depends on package: pybind11>0 - found ===> Returning to build of chemicalfun-0.1.8_2 ===> chemicalfun-0.1.8_2 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.3.pkg [pkg-builder.dan.net.uk] Installing cmake-core-3.28.3... [pkg-builder.dan.net.uk] `-- Installing expat-2.6.1... [pkg-builder.dan.net.uk] `-- Extracting expat-2.6.1: .......... done [pkg-builder.dan.net.uk] `-- Installing jsoncpp-1.9.5... [pkg-builder.dan.net.uk] `-- Extracting jsoncpp-1.9.5: .......... done [pkg-builder.dan.net.uk] `-- Installing libuv-1.48.0... [pkg-builder.dan.net.uk] `-- Extracting libuv-1.48.0: .......... done [pkg-builder.dan.net.uk] `-- Installing rhash-1.4.4_1... [pkg-builder.dan.net.uk] `-- Extracting rhash-1.4.4_1: .......... done [pkg-builder.dan.net.uk] Extracting cmake-core-3.28.3: .......... done ===> chemicalfun-0.1.8_2 depends on file: /usr/local/bin/cmake - found ===> Returning to build of chemicalfun-0.1.8_2 ===> chemicalfun-0.1.8_2 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,2.pkg [pkg-builder.dan.net.uk] Installing ninja-1.11.1,2... [pkg-builder.dan.net.uk] Extracting ninja-1.11.1,2: ..... done ===> chemicalfun-0.1.8_2 depends on executable: ninja - found ===> Returning to build of chemicalfun-0.1.8_2 ===> chemicalfun-0.1.8_2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.4.0_3.pkg [pkg-builder.dan.net.uk] Installing eigen-3.4.0_3... [pkg-builder.dan.net.uk] `-- Installing blas-3.12.0_1... [pkg-builder.dan.net.uk] | `-- Installing gcc13-13.2.0_4... [pkg-builder.dan.net.uk] | | `-- Installing binutils-2.40_5,1... [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.5_1... [pkg-builder.dan.net.uk] | | | `-- Installing liblz4-1.9.4_1,1... [pkg-builder.dan.net.uk] | | | `-- Extracting liblz4-1.9.4_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.5_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting binutils-2.40_5,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | `-- Installing mpfr-4.2.1,1... [pkg-builder.dan.net.uk] | | `-- Extracting mpfr-4.2.1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] | `-- Extracting gcc13-13.2.0_4: .......... done create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) [pkg-builder.dan.net.uk] `-- Extracting blas-3.12.0_1: ..... done [pkg-builder.dan.net.uk] `-- Installing lapack-3.12.0_2... [pkg-builder.dan.net.uk] `-- Extracting lapack-3.12.0_2: .......... done [pkg-builder.dan.net.uk] Extracting eigen-3.4.0_3: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> chemicalfun-0.1.8_2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of chemicalfun-0.1.8_2 ===> chemicalfun-0.1.8_2 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> chemicalfun-0.1.8_2 depends on shared library: libfmt.so - not found ===> Installing existing package /packages/All/libfmt-10.2.1.pkg [pkg-builder.dan.net.uk] Installing libfmt-10.2.1... [pkg-builder.dan.net.uk] Extracting libfmt-10.2.1: .......... done ===> chemicalfun-0.1.8_2 depends on shared library: libfmt.so - found (/usr/local/lib/libfmt.so) ===> Returning to build of chemicalfun-0.1.8_2 ===> chemicalfun-0.1.8_2 depends on shared library: libspdlog.so - not found ===> Installing existing package /packages/All/spdlog-1.13.0.pkg [pkg-builder.dan.net.uk] Installing spdlog-1.13.0... [pkg-builder.dan.net.uk] Extracting spdlog-1.13.0: .......... done ===> chemicalfun-0.1.8_2 depends on shared library: libspdlog.so - found (/usr/local/lib/libspdlog.so) ===> Returning to build of chemicalfun-0.1.8_2 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for chemicalfun-0.1.8_2 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/chemicalfun/work/.build -- The CXX compiler identification is Clang 14.0.5 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /ccache/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/local/share/cmake/pybind11/FindPythonLibsNew.cmake:98 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/local/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/local/share/cmake/pybind11/pybind11Common.cmake:188 (include) /usr/local/share/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:95 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.9 (found suitable version "3.9.18", minimum required is "3.6") -- Found PythonLibs: /usr/local/lib/libpython3.9.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Performing Test HAS_FLTO_THIN -- Performing Test HAS_FLTO_THIN - Success -- Found pybind11: /usr/local/include (found version "2.11.1") -- Found pybind11 v2.11.1: /usr/local/include;/usr/local/include/python3.9 -- Found pybind11 v2.11.1: /usr/local/include;/usr/local/include/python3.9 -- Building test suite: ON -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- The C compiler identification is Clang 14.0.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /ccache/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found Python: /usr/local/bin/python3.9 (found version "3.9.18") found components: Interpreter -- Configuring done (7.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_COLOR_MAKEFILE CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED Python3_EXECUTABLE -- Build files have been written to: /wrkdirs/usr/ports/science/chemicalfun/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for chemicalfun-0.1.8_2 [ 3% 1/30] /ccache/libexec/ccache/c++ -DChemicalFun_EXPORTS -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/src -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/include -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -MD -MT src/CMakeFiles/ChemicalFun.dir/Common/Exception.cpp.o -MF src/CMakeFiles/ChemicalFun.dir/Common/Exception.cpp.o.d -o src/CMakeFiles/ChemicalFun.dir/Common/Exception.cpp.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/src/Common/Exception.cpp [ 6% 2/30] /ccache/libexec/ccache/c++ -DChemicalFun_EXPORTS -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/src 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-isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -std=c++17 -fPIC -Wall -Wshadow -Wconversion -DGTEST_HAS_PTHREAD=1 -fexceptions -W -Wpointer-arith -Wreturn-type -Wcast-qual -Wwrite-strings -Wswitch -Wunused-parameter -Wcast-align -Wchar-subscripts -Winline -Wredundant-decls -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -pthread -MD -MT tests/REQUIRED/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF tests/REQUIRED/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o tests/REQUIRED/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/tests/googletest/googletest/src/gtest-all.cc [ 60% 18/30] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -L/usr/local/lib -lfmt -fstack-protector-strong -shared -Wl,-soname,libgtest.so.1.13.0 -o lib/libgtest.so.1.13.0 tests/REQUIRED/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -lpthread && : [ 63% 19/30] /usr/local/bin/cmake -E cmake_symlink_library lib/libgtest.so.1.13.0 lib/libgtest.so.1.13.0 lib/libgtest.so && : [ 66% 20/30] : && /ccache/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -L/usr/local/lib -lfmt -fstack-protector-strong tests/CMakeFiles/test_main.dir/main.cpp.o -o tests/test_main -Wl,-rpath,/wrkdirs/usr/ports/science/chemicalfun/work/.build/src:/wrkdirs/usr/ports/science/chemicalfun/work/.build/lib src/libChemicalFun.so lib/libgtest.so.1.13.0 -lpthread && : [ 70% 21/30] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -L/usr/local/lib -lfmt -fstack-protector-strong -shared -Wl,-soname,libgmock.so.1.13.0 -o lib/libgmock.so.1.13.0 tests/REQUIRED/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -Wl,-rpath,/wrkdirs/usr/ports/science/chemicalfun/work/.build/lib lib/libgtest.so.1.13.0 -lpthread && : [ 73% 22/30] /usr/local/bin/cmake -E cmake_symlink_library lib/libgmock.so.1.13.0 lib/libgmock.so.1.13.0 lib/libgmock.so && : [ 76% 23/30] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -L/usr/local/lib -lfmt -fstack-protector-strong -shared -Wl,-soname,libgmock_main.so.1.13.0 -o lib/libgmock_main.so.1.13.0 tests/REQUIRED/googlemock/CMakeFiles/gmock_main.dir/src/gmock_main.cc.o -Wl,-rpath,/wrkdirs/usr/ports/science/chemicalfun/work/.build/lib lib/libgmock.so.1.13.0 lib/libgtest.so.1.13.0 -lpthread && : [ 80% 24/30] /usr/local/bin/cmake -E cmake_symlink_library lib/libgmock_main.so.1.13.0 lib/libgmock_main.so.1.13.0 lib/libgmock_main.so && : [ 83% 25/30] /ccache/libexec/ccache/c++ -DGTEST_CREATE_SHARED_LIBRARY=1 -Dgtest_main_EXPORTS -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/src -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/include -isystem /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/tests/googletest/googletest/include -isystem /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/tests/googletest/googletest -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -std=c++17 -fPIC -Wall -Wshadow -Wconversion -DGTEST_HAS_PTHREAD=1 -fexceptions -W -Wpointer-arith -Wreturn-type -Wcast-qual -Wwrite-strings -Wswitch -Wunused-parameter -Wcast-align -Wchar-subscripts -Winline -Wredundant-decls -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -pthread -MD -MT tests/REQUIRED/googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o -MF tests/REQUIRED/googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o.d -o tests/REQUIRED/googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/tests/googletest/googletest/src/gtest_main.cc [ 86% 26/30] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -L/usr/local/lib -lfmt -fstack-protector-strong -shared -Wl,-soname,libgtest_main.so.1.13.0 -o lib/libgtest_main.so.1.13.0 tests/REQUIRED/googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o -Wl,-rpath,/wrkdirs/usr/ports/science/chemicalfun/work/.build/lib lib/libgtest.so.1.13.0 -lpthread && : [ 90% 27/30] /usr/local/bin/cmake -E cmake_symlink_library lib/libgtest_main.so.1.13.0 lib/libgtest_main.so.1.13.0 lib/libgtest_main.so && : [ 93% 28/30] /ccache/libexec/ccache/c++ -DPyChemicalFun_EXPORTS -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/src -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/include -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/python -I/include/eigen3 -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376 -isystem /usr/local/include/python3.9 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -MD -MT python/PyChemicalFun/CMakeFiles/PyChemicalFun.dir/pyChemicalData.cpp.o -MF python/PyChemicalFun/CMakeFiles/PyChemicalFun.dir/pyChemicalData.cpp.o.d -o python/PyChemicalFun/CMakeFiles/PyChemicalFun.dir/pyChemicalData.cpp.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/python/PyChemicalFun/pyChemicalData.cpp [ 96% 29/30] : && /ccache/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -L/usr/local/lib -lfmt -fstack-protector-strong -shared -o python/PyChemicalFun/PyChemicalFun.cpython-39.so python/PyChemicalFun/CMakeFiles/PyChemicalFun.dir/pyChemicalData.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/chemicalfun/work/.build/src src/libChemicalFun.so && : [100% 30/30] cd /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun && /usr/local/bin/cmake -E copy /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/PyChemicalFun/PyChemicalFun.cpython-39.so /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun/PyChemicalFun.cpython-39.so && /usr/local/bin/python3.9 -m pip install --root /wrkdirs/usr/ports/science/chemicalfun/work/stage --prefix /usr/local --ignore-installed . Processing /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Building wheels for collected packages: chemicalfun Building wheel for chemicalfun (setup.py): started Building wheel for chemicalfun (setup.py): finished with status 'done' Created wheel for chemicalfun: filename=chemicalfun-0.1.8-py3-none-any.whl size=209624 sha256=18836b13d543801db055d23d8bcdcf9a8e200e93e8693f160901b218d1da0e72 Stored in directory: /tmp/pip-ephem-wheel-cache-nb5svh0d/wheels/1f/7c/4b/94f46a04ad2a92da474605e057be257947b2cec58eb59f1b3f Successfully built chemicalfun Installing collected packages: chemicalfun Successfully installed chemicalfun-0.1.8 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> chemicalfun-0.1.8_2 depends on file: /usr/local/bin/python3.9 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for chemicalfun-0.1.8_2 ===> Generating temporary packing list [ 50% 1/2] cd /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun && /usr/local/bin/cmake -E copy /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/PyChemicalFun/PyChemicalFun.cpython-39.so /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun/PyChemicalFun.cpython-39.so && /usr/local/bin/python3.9 -m pip install --root /wrkdirs/usr/ports/science/chemicalfun/work/stage --prefix /usr/local --ignore-installed . Processing /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Building wheels for collected packages: chemicalfun Building wheel for chemicalfun (setup.py): started Building wheel for chemicalfun (setup.py): finished with status 'done' Created wheel for chemicalfun: filename=chemicalfun-0.1.8-py3-none-any.whl size=209624 sha256=cf7750ef1545bc080d6376d2572d6d1183fef5b59cc4ea3bece4c5a45151f820 Stored in directory: /tmp/pip-ephem-wheel-cache-g6pkyz1m/wheels/1f/7c/4b/94f46a04ad2a92da474605e057be257947b2cec58eb59f1b3f Successfully built chemicalfun Installing collected packages: chemicalfun Successfully installed chemicalfun-0.1.8 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv [ 50% 2/2] cd /wrkdirs/usr/ports/science/chemicalfun/work/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/lib/cmake/ChemicalFun/ChemicalFunTargets.cmake -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/lib/cmake/ChemicalFun/ChemicalFunTargets-release.cmake -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/lib/cmake/ChemicalFun/ChemicalFunConfig.cmake -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/lib/cmake/ChemicalFun/ChemicalFunConfigVersion.cmake -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/lib/libChemicalFun.so -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/FormulaParser.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/FormulaParser -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/FormulaParser/MoietyParser.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/FormulaParser/ChemicalFormulaParser.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/FormulaParser/ChemicalData.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator/Reaction.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator/ChemicalReactions.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator/Combiner.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator/MatrixUtils.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator/Generator.h Processing /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Building wheels for collected packages: chemicalfun Building wheel for chemicalfun (setup.py): started Building wheel for chemicalfun (setup.py): finished with status 'done' Created wheel for chemicalfun: filename=chemicalfun-0.1.8-py3-none-any.whl size=209624 sha256=3125fa04b40bbe65d66a51859a972e9a4553b88502d163ea136d560339924f64 Stored in directory: /tmp/pip-ephem-wheel-cache-qcehbhmt/wheels/1f/7c/4b/94f46a04ad2a92da474605e057be257947b2cec58eb59f1b3f Successfully built chemicalfun Installing collected packages: chemicalfun Successfully installed chemicalfun-0.1.8 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-03-29T12:54:39+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=ec5f6e2261' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for chemicalfun-0.1.8_2 ===> Building chemicalfun-0.1.8_2 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for chemicalfun-0.1.8_2 build of science/chemicalfun | chemicalfun-0.1.8_2 ended at Fri Mar 29 12:58:50 GMT 2024 build time: 00:04:11