=>> Building science/atompaw build started at Thu Mar 28 06:07:20 GMT 2024 port directory: /usr/ports/science/atompaw package name: atompaw-4.2.0.3_1 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 688 Jan 3 00:12 /usr/ports/science/atompaw/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: f2489ab0c7 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 17 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/17/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for atompaw-4.2.0.3_1: DOCS=on: Build and/or install documentation LIBXC=on: Build with libxc ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --enable-libxc --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/atompaw/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/atompaw/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/atompaw/work/.cache HOME=/wrkdirs/usr/ports/science/atompaw/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/atompaw/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/atompaw/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CCACHE_DIR="/root/.ccache" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/atompaw/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/atompaw/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/atompaw/work/.cache HOME=/wrkdirs/usr/ports/science/atompaw/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/atompaw/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/atompaw/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/atompaw" EXAMPLESDIR="share/examples/atompaw" DATADIR="share/atompaw" WWWDIR="www/atompaw" ETCDIR="etc/atompaw" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/atompaw DOCSDIR=/usr/local/share/doc/atompaw EXAMPLESDIR=/usr/local/share/examples/atompaw WWWDIR=/usr/local/www/atompaw ETCDIR=/usr/local/etc/atompaw --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> atompaw-4.2.0.3_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> atompaw-4.2.0.3_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of atompaw-4.2.0.3_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by atompaw-4.2.0.3_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by atompaw-4.2.0.3_1 for building => SHA256 Checksum OK for atompaw-4.2.0.3.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by atompaw-4.2.0.3_1 for building ===> Extracting for atompaw-4.2.0.3_1 => SHA256 Checksum OK for atompaw-4.2.0.3.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for atompaw-4.2.0.3_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> atompaw-4.2.0.3_1 depends on executable: gfortran13 - not found ===> Installing existing package /packages/All/gcc13-13.2.0_4.pkg [pkg-builder.dan.net.uk] Installing gcc13-13.2.0_4... [pkg-builder.dan.net.uk] `-- Installing binutils-2.40_5,1... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing zstd-1.5.5_1... [pkg-builder.dan.net.uk] | | `-- Installing liblz4-1.9.4_1,1... [pkg-builder.dan.net.uk] | | `-- Extracting liblz4-1.9.4_1,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting zstd-1.5.5_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting binutils-2.40_5,1: .......... done [pkg-builder.dan.net.uk] `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | `-- Installing mpfr-4.2.1,1... [pkg-builder.dan.net.uk] | `-- Extracting mpfr-4.2.1,1: .......... done [pkg-builder.dan.net.uk] `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] Extracting gcc13-13.2.0_4: .......... done create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> atompaw-4.2.0.3_1 depends on executable: gfortran13 - found ===> Returning to build of atompaw-4.2.0.3_1 ===> atompaw-4.2.0.3_1 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg-builder.dan.net.uk] Installing gmake-4.4.1... [pkg-builder.dan.net.uk] Extracting gmake-4.4.1: .......... done ===> atompaw-4.2.0.3_1 depends on package: gmake>=4.4.1 - found ===> Returning to build of atompaw-4.2.0.3_1 ===> atompaw-4.2.0.3_1 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> atompaw-4.2.0.3_1 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.12.0_2.pkg [pkg-builder.dan.net.uk] Installing lapack-3.12.0_2... [pkg-builder.dan.net.uk] `-- Installing blas-3.12.0_1... [pkg-builder.dan.net.uk] `-- Extracting blas-3.12.0_1: ..... done [pkg-builder.dan.net.uk] Extracting lapack-3.12.0_2: .......... done ===> atompaw-4.2.0.3_1 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of atompaw-4.2.0.3_1 ===> atompaw-4.2.0.3_1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> atompaw-4.2.0.3_1 depends on shared library: libxc.so - not found ===> Installing existing package /packages/All/libxc-6.0.0_2.pkg [pkg-builder.dan.net.uk] Installing libxc-6.0.0_2... [pkg-builder.dan.net.uk] `-- Installing python39-3.9.18_1... [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.4_1... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.4_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-2.5.1... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-2.5.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing openssl-3.0.13_1,1... [pkg-builder.dan.net.uk] | `-- Extracting openssl-3.0.13_1,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.10... [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.10: .......... done [pkg-builder.dan.net.uk] `-- Extracting python39-3.9.18_1: .......... done [pkg-builder.dan.net.uk] Extracting libxc-6.0.0_2: .......... done ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> atompaw-4.2.0.3_1 depends on shared library: libxc.so - found (/usr/local/lib/libxc.so) ===> Returning to build of atompaw-4.2.0.3_1 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for atompaw-4.2.0.3_1 configure: loading site script /usr/ports/Templates/config.site configure: regenerating the VERSION file checking build system type... amd64-portbld-freebsd13.2 checking host system type... amd64-portbld-freebsd13.2 checking target system type... amd64-portbld-freebsd13.2 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether gmake supports nested variables... yes checking whether gmake sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for gawk... (cached) /usr/bin/awk checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for dvipdf... no checking for latex... no checking for pdflatex... no checking for perl... no checking for gfortran13... /usr/local/bin/gfortran13 checking whether the Fortran compiler works... yes checking for Fortran compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU Fortran compiler... yes checking whether gfortran13 accepts -g... yes checking which type of Fortran compiler we have... gnu 13.2 checking fortran 90 modules extension... mod checking for Fortran flag to compile .F90 files... none configure: determining Fortran module case checking whether Fortran modules are upper-case... no checking whether the Fortran compiler provides the iso_c_binding module... yes checking whether the Fortran compiler accepts flush()... yes checking whether the Fortran compiler accepts flush_()... no checking whether the Fortran compiler accepts isatty()... yes checking how to print strings... printf checking for style of include used by gmake... GNU checking for gcc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking dependency style of cc... gcc3 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking the maximum length of command line arguments... (cached) 524288 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking how to convert amd64-portbld-freebsd13.2 file names to amd64-portbld-freebsd13.2 format... func_convert_file_noop checking how to convert amd64-portbld-freebsd13.2 file names to toolchain format... func_convert_file_noop checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from cc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd13.2 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran13 option to produce PIC... -fPIC checking if gfortran13 PIC flag -fPIC works... yes checking if gfortran13 static flag -static works... yes checking if gfortran13 supports -c -o file.o... yes checking if gfortran13 supports -c -o file.o... (cached) yes checking whether the gfortran13 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd13.2 ld.so checking how to hardcode library paths into programs... immediate configure: configure: ===== Looking for Linear Algebra libraries configure: ...Linear Algebra: trying with current environment checking for library containing zhpev... none required checking for library containing zgemm... none required configure: => Linear Algebra libraries were found on the system checking whether Linear Algebra libraries work... yes configure: ===== Linear Algebra libraries OK for use configure: configure: configure: ===== Looking for LibXC headers and libraries configure: ...LibXC: trying with current environment checking xc.h usability... no checking xc.h presence... no checking for xc.h... no checking xc_funcs.h usability... no checking xc_funcs.h presence... no checking for xc_funcs.h... no configure: ...LibXC: trying in /opt/local checking xc.h usability... no checking xc.h presence... no checking for xc.h... no checking xc_funcs.h usability... no checking xc_funcs.h presence... no checking for xc_funcs.h... no configure: ...LibXC: trying in /usr/local checking xc.h usability... yes checking xc.h presence... yes checking for xc.h... yes checking xc_funcs.h usability... yes checking xc_funcs.h presence... yes checking for xc_funcs.h... yes checking for library containing xc_func_init xc_func_end... yes configure: => libXC library was found on the system configure: => A LibXC library was found on the system checking whether LibXC library works... yes configure: ===== LibXC library OK for use configure: configure: FC = gfortran13 configure: CPPFLAGS = -I/usr/local/include configure: FCFLAGS = -Wl,-rpath=/usr/local/lib/gcc13 configure: LDFLAGS = -L/usr/local/lib -lxc -lm -lblas -llapack -lblas -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong configure: LIBS = -L/usr/local/lib -lxc -lm -lblas -llapack -lblas checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/pkginfo.f90 config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for atompaw-4.2.0.3_1 gmake all-recursive gmake[1]: Entering directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3' Making all in src gmake[2]: Entering directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3/src' gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o io_tools.o io_tools.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o globalmath.o globalmath.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o atomdata.o atomdata.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o tools_mod.o tools_mod.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o gridmod.o gridmod.F90 cc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT libxc_tools.o -MD -MP -MF .deps/libxc_tools.Tpo -c -o libxc_tools.o libxc_tools.c mv -f .deps/libxc_tools.Tpo .deps/libxc_tools.Po gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o libxc_mod.o libxc_mod.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o r2scanmod.o r2scanmod.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o excor.o excor.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o anderson_driver.o anderson_driver.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o exxdata.o exxdata.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o fock.o fock.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o search_sort.o search_sort.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o blockdavidson_mod.o blockdavidson_mod.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o numerov_mod.o numerov_mod.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o radialdirac.o radialdirac.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o radialked.o radialked.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o radialsr.o radialsr.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o interpolation_mod.o interpolation_mod.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o splinesolver.o splinesolver.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o general_mod.o general_mod.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o report_mod.o report_mod.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o hf_mod.o hf_mod.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o exx_mod.o exx_mod.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o ldagga_mod.o ldagga_mod.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o input_dataset_mod.o input_dataset_mod.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o aeatom.o aeatom.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o pseudodata.o pseudodata.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o pseudo_sub.o pseudo_sub.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o exx_pseudo.o exx_pseudo.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o paw_sub.o paw_sub.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o hf_pseudo.o hf_pseudo.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o pseudo.o pseudo.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o atompaw_report.o atompaw_report.F90 gfortran13 -Wl,-rpath=/usr/local/lib/gcc13 -c -o pkginfo.o pkginfo.f90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o abinitinterface.o abinitinterface.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o pwscfinterface.o pwscfinterface.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o xmlinterface.o xmlinterface.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o atompaw_prog.o atompaw_prog.F90 gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o graphatom_report.o graphatom_report.F90 /bin/sh ../libtool --tag=FC --mode=link gfortran13 -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib -lxc -lm -lblas -llapack -lblas -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -o atompaw atompaw_prog.o libxc_tools.o io_tools.o tools_mod.o general_mod.o globalmath.o search_sort.o input_dataset_mod.o aeatom.o anderson_driver.o atomdata.o blockdavidson_mod.o excor.o exx_mod.o exx_pseudo.o exxdata.o fock.o gridmod.o hf_mod.o hf_pseudo.o interpolation_mod.o ldagga_mod.o libxc_mod.o numerov_mod.o paw_sub.o pseudo_sub.o pseudo.o pseudodata.o r2scanmod.o radialdirac.o radialked.o splinesolver.o radialsr.o report_mod.o abinitinterface.o pwscfinterface.o xmlinterface.o atompaw_report.o graphatom_report.o pkginfo.o -L/usr/local/lib -lxc -lm -lblas -llapack -lblas libtool: link: gfortran13 -Wl,-rpath=/usr/local/lib/gcc13 -Wl,-rpath=/usr/local/lib/gcc13 -fstack-protector-strong -o atompaw atompaw_prog.o libxc_tools.o io_tools.o tools_mod.o general_mod.o globalmath.o search_sort.o input_dataset_mod.o aeatom.o anderson_driver.o atomdata.o blockdavidson_mod.o excor.o exx_mod.o exx_pseudo.o exxdata.o fock.o gridmod.o hf_mod.o hf_pseudo.o interpolation_mod.o ldagga_mod.o libxc_mod.o numerov_mod.o paw_sub.o pseudo_sub.o pseudo.o pseudodata.o r2scanmod.o radialdirac.o radialked.o splinesolver.o radialsr.o report_mod.o abinitinterface.o pwscfinterface.o xmlinterface.o atompaw_report.o graphatom_report.o pkginfo.o -L/usr/local/lib -L/usr/local/lib/gcc13 -lxc -lm -llapack -lblas gfortran13 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc13 -c -o graphatom.o graphatom.F90 /bin/sh ../libtool --tag=FC --mode=link gfortran13 -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib -lxc -lm -lblas -llapack -lblas -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong -o graphatom graphatom.o libxc_tools.o io_tools.o tools_mod.o general_mod.o globalmath.o search_sort.o input_dataset_mod.o aeatom.o anderson_driver.o atomdata.o blockdavidson_mod.o excor.o exx_mod.o exx_pseudo.o exxdata.o fock.o gridmod.o hf_mod.o hf_pseudo.o interpolation_mod.o ldagga_mod.o libxc_mod.o numerov_mod.o paw_sub.o pseudo_sub.o pseudo.o pseudodata.o r2scanmod.o radialdirac.o radialked.o splinesolver.o radialsr.o report_mod.o abinitinterface.o pwscfinterface.o xmlinterface.o atompaw_report.o graphatom_report.o pkginfo.o -L/usr/local/lib -lxc -lm -lblas -llapack -lblas libtool: link: gfortran13 -Wl,-rpath=/usr/local/lib/gcc13 -Wl,-rpath=/usr/local/lib/gcc13 -fstack-protector-strong -o graphatom graphatom.o libxc_tools.o io_tools.o tools_mod.o general_mod.o globalmath.o search_sort.o input_dataset_mod.o aeatom.o anderson_driver.o atomdata.o blockdavidson_mod.o excor.o exx_mod.o exx_pseudo.o exxdata.o fock.o gridmod.o hf_mod.o hf_pseudo.o interpolation_mod.o ldagga_mod.o libxc_mod.o numerov_mod.o paw_sub.o pseudo_sub.o pseudo.o pseudodata.o r2scanmod.o radialdirac.o radialked.o splinesolver.o radialsr.o report_mod.o abinitinterface.o pwscfinterface.o xmlinterface.o atompaw_report.o graphatom_report.o pkginfo.o -L/usr/local/lib -L/usr/local/lib/gcc13 -lxc -lm -llapack -lblas gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3/src' gmake[2]: Entering directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3' gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3' =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> atompaw-4.2.0.3_1 depends on executable: gfortran13 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for atompaw-4.2.0.3_1 ===> Generating temporary packing list Making install in src gmake[1]: Entering directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3/src' gmake[2]: Entering directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3/src' /bin/mkdir -p '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/bin' /bin/sh ../libtool --mode=install install -s -m 555 atompaw graphatom '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/bin' libtool: install: install -m 555 -s atompaw /wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/bin/atompaw libtool: install: install -m 555 -s graphatom /wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/bin/graphatom gmake[2]: Nothing to be done for 'install-data-am'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3/src' gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3/src' gmake[1]: Entering directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3' gmake[2]: Entering directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3' gmake[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw' /bin/mkdir -p '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/example/Na/outputdata' install -m 0644 example/Na/outputdata/in example/Na/outputdata/Na.atomicdata example/Na/outputdata/Na.LDA-PW-paw.abinit example/Na/outputdata/Na.LDA-PW-paw.UPF '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/example/Na/outputdata' /bin/mkdir -p '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/example/F/lda' install -m 0644 example/F/lda/F.input example/F/lda/F.atomicdata example/F/lda/F.LDA-PW-paw.abinit example/F/lda/F.LDA-PW-paw.UPF '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/example/F/lda' /bin/mkdir -p '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/example/Li/lda' install -m 0644 example/Li/lda/Li.input example/Li/lda/Li.atomicdata example/Li/lda/Li.LDA-PW-paw.abinit example/Li/lda/Li.LDA-PW-paw.UPF '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/example/Li/lda' /bin/mkdir -p '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/doc/scripts' install -m 0644 doc/scripts/explorelogderiv doc/scripts/explorewfn doc/scripts/plotdensity doc/scripts/plotlogderiv doc/scripts/plotpotential doc/scripts/plotwfn '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/doc/scripts' /bin/mkdir -p '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/example/Li/hf' install -m 0644 example/Li/hf/Li.input example/Li/hf/Li.atomicdata '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/example/Li/hf' /bin/mkdir -p '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/example/F/hf' install -m 0644 example/F/hf/F.input example/F/hf/F.atomicdata '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/example/F/hf' /bin/mkdir -p '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/doc' install -m 0644 doc/atompaw-usersguide.pdf doc/atompaw-usersguide.doc doc/Atompaw4.2.0.0.pdf doc/Atompaw4.2.0.0.tex doc/ATOMPAW_Explore_Userguide.pdf doc/ATOMPAW_Explore_Userguide.odt '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/doc' /bin/mkdir -p '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/doc/exploresetup' install -m 0644 doc/exploresetup/ParameterExplore.cpp doc/exploresetup/ParameterExploreReadMe.txt '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/doc/exploresetup' /bin/mkdir -p '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/example/Au/dirac' install -m 0644 example/Au/dirac/Au.input example/Au/dirac/Au '/wrkdirs/usr/ports/science/atompaw/work/stage/usr/local/share/doc/atompaw/example/Au/dirac' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3' gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/atompaw/work/atompaw-4.2.0.3' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-03-28T06:07:20+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=f2489ab0c7' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for atompaw-4.2.0.3_1 ===> Building atompaw-4.2.0.3_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for atompaw-4.2.0.3_1 build of science/atompaw | atompaw-4.2.0.3_1 ended at Thu Mar 28 06:08:14 GMT 2024 build time: 00:00:55