=>> Building science/apbs build started at Thu Apr 4 06:38:33 BST 2024 port directory: /usr/ports/science/apbs package name: apbs-1.5.102 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 989 Mar 8 2023 /usr/ports/science/apbs/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: c014f9c79a Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 17 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/17/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/apbs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/apbs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/apbs/work/.cache HOME=/wrkdirs/usr/ports/science/apbs/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/apbs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/apbs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCACHE_DIR="/root/.ccache" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/apbs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/apbs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/apbs/work/.cache HOME=/wrkdirs/usr/ports/science/apbs/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/apbs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/apbs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/apbs/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fcommon -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fcommon -fstack-protector-strong -fno-strict-aliasing " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/apbs" EXAMPLESDIR="share/examples/apbs" DATADIR="share/apbs" WWWDIR="www/apbs" ETCDIR="etc/apbs" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/apbs DOCSDIR=/usr/local/share/doc/apbs EXAMPLESDIR=/usr/local/share/examples/apbs WWWDIR=/usr/local/www/apbs ETCDIR=/usr/local/etc/apbs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> apbs-1.5.102 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> apbs-1.5.102 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of apbs-1.5.102 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by apbs-1.5.102 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by apbs-1.5.102 for building => SHA256 Checksum OK for Electrostatics-apbs-pdb2pqr-apbs-1.5-102-g500c1473_GH0.tar.gz. => SHA256 Checksum OK for Electrostatics-FETK-0c6fdea_GH0.tar.gz. => SHA256 Checksum OK for Electrostatics-geoflow_c-e8ce510_GH0.tar.gz. => SHA256 Checksum OK for lwwilson1-TABIPB-7e3a407_GH0.tar.gz. => SHA256 Checksum OK for lwwilson1-mesh_routines-ddb75cb_GH0.tar.gz. => SHA256 Checksum OK for davas301-pb_solvers-4858465_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by apbs-1.5.102 for building ===> Extracting for apbs-1.5.102 => SHA256 Checksum OK for Electrostatics-apbs-pdb2pqr-apbs-1.5-102-g500c1473_GH0.tar.gz. => SHA256 Checksum OK for Electrostatics-FETK-0c6fdea_GH0.tar.gz. => SHA256 Checksum OK for Electrostatics-geoflow_c-e8ce510_GH0.tar.gz. => SHA256 Checksum OK for lwwilson1-TABIPB-7e3a407_GH0.tar.gz. => SHA256 Checksum OK for lwwilson1-mesh_routines-ddb75cb_GH0.tar.gz. => SHA256 Checksum OK for davas301-pb_solvers-4858465_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for apbs-1.5.102 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> apbs-1.5.102 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.28.3.pkg [pkg-builder.dan.net.uk] Installing cmake-core-3.28.3... [pkg-builder.dan.net.uk] `-- Installing expat-2.6.1... [pkg-builder.dan.net.uk] `-- Extracting expat-2.6.1: .......... done [pkg-builder.dan.net.uk] `-- Installing jsoncpp-1.9.5... [pkg-builder.dan.net.uk] `-- Extracting jsoncpp-1.9.5: .......... done [pkg-builder.dan.net.uk] `-- Installing libuv-1.48.0... [pkg-builder.dan.net.uk] `-- Extracting libuv-1.48.0: .......... done [pkg-builder.dan.net.uk] `-- Installing openssl-3.0.13_1,1... [pkg-builder.dan.net.uk] `-- Extracting openssl-3.0.13_1,1: .......... done [pkg-builder.dan.net.uk] `-- Installing rhash-1.4.4_1... [pkg-builder.dan.net.uk] | `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] | `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting rhash-1.4.4_1: .......... done [pkg-builder.dan.net.uk] Extracting cmake-core-3.28.3: .......... done ===> apbs-1.5.102 depends on file: /usr/local/bin/cmake - found ===> Returning to build of apbs-1.5.102 ===> apbs-1.5.102 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.11.1,2.pkg [pkg-builder.dan.net.uk] Installing ninja-1.11.1,2... [pkg-builder.dan.net.uk] `-- Installing python39-3.9.18_1... [pkg-builder.dan.net.uk] | `-- Installing libffi-3.4.4_1... [pkg-builder.dan.net.uk] | `-- Extracting libffi-3.4.4_1: .......... done [pkg-builder.dan.net.uk] | `-- Installing mpdecimal-2.5.1... [pkg-builder.dan.net.uk] | `-- Extracting mpdecimal-2.5.1: .......... done [pkg-builder.dan.net.uk] | `-- Installing readline-8.2.10... [pkg-builder.dan.net.uk] | `-- Extracting readline-8.2.10: .......... done [pkg-builder.dan.net.uk] `-- Extracting python39-3.9.18_1: .......... done [pkg-builder.dan.net.uk] Extracting ninja-1.11.1,2: ..... done ===== Message from python39-3.9.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> apbs-1.5.102 depends on executable: ninja - found ===> Returning to build of apbs-1.5.102 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for apbs-1.5.102 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/sg/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/sg/configure ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/mc/swig/m4/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/mc/swig/configure ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/mc/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/mc/configure ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/punc/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/punc/configure ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/gamer/swig/m4/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/gamer/swig/configure ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/gamer/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/gamer/configure ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/configure ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/apbs/work/.build CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is Clang 14.0.5 -- The CXX compiler identification is Clang 14.0.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /ccache/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /ccache/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machine epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Looking for time -- Looking for time - found -- Looking for rand -- Looking for rand - found -- Looking for srand -- Looking for srand - found CMake Deprecation Warning at externals/fetk/maloc/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Setting project paths -- Setting lookup paths for headers and libraries -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of mode_t -- Check size of mode_t - done -- Check size of pid_t -- Check size of pid_t - done -- Check size of size_t -- Check size of size_t - done -- Looking for 4 include files stdlib.h, ..., float.h -- Looking for 4 include files stdlib.h, ..., float.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/socket.h -- Looking for include file sys/socket.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file sys/un.h -- Looking for include file sys/un.h - found -- Looking for include file sys/wait.h -- Looking for include file sys/wait.h - found -- Looking for include file fcntl.h -- Looking for include file fcntl.h - found -- Looking for include file netinet/in.h -- Looking for include file netinet/in.h - found -- Looking for include file arpa/inet.h -- Looking for include file arpa/inet.h - found -- Looking for include file netdb.h -- Looking for include file netdb.h - found -- Looking for include file rpc/rpc.h -- Looking for include file rpc/rpc.h - found -- Looking for getcwd -- Looking for getcwd - found -- Looking for O_NONBLOCK -- Looking for O_NONBLOCK - found -- With sources: base/maloc_base.c;psh/psh.c;psh/vcom.c;psh/vmp.c;psh/vmpi.c;vsh/vlex.c;vsh/vpars.c;vsh/vpup.c;vsh/vsh.c;vsh/vyacc.c;vsys/vio.c;vsys/viofb.c;vsys/vmem.c;vsys/vnm.c;vsys/vnmfb.c;vsys/vpred.c;vsys/vset.c;vsys/ziofb.c -- With external headers: base/maloc/maloc.h;base/maloc/maloc_base.h;psh/maloc/psh.h;psh/maloc/vcom.h;psh/maloc/vmp.h;psh/maloc/vmpi.h;vsh/maloc/vsh.h;vsys/maloc/vio.h;vsys/maloc/vmem.h;vsys/maloc/vnm.h;vsys/maloc/vset.h;vsys/maloc/vsys.h;vsys/maloc/vpred.h -- With internal headers: base/maloc_base_p.h;psh/psh_p.h;psh/vcom_p.h;psh/vmpi_p.h;psh/vmp_p.h;vsh/vpup.h;vsh/vsh_p.h;vsh/vyacc.h;vsys/vio_p.h;vsys/vmem_p.h;vsys/vnm_p.h;vsys/vpred_p.h;vsys/vset_p.h -- Inline functions enabled -- Verbose debugging mode enabled -- Adding apbs_generic -- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c -- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h -- With internal header files -- With library dependencies m;stdc++;maloc -- Added apbs_generic -- Adding apbs_pmgc -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h -- With internal header files -- With library dependencies m;stdc++;maloc -- Added apbs_pmgc -- Adding apbs_mg -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h -- With internal header files -- With library dependencies m;stdc++;maloc;apbs_generic;apbs_pmgc -- Added apbs_mg -- Adding apbs_routines -- With source files routines.c -- With external header files -- With internal header files -- With library dependencies m;stdc++;maloc -- Added apbs_routines -- -- -- APBS Libraries: m;stdc++;maloc -- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines -- -- -O2 -pipe -fcommon -fstack-protector-strong -fno-strict-aliasing -- Supplemental tools enabled -- Building mesh -- libraries: apbs_generic;apbs_mg;apbs_pmgc -- Building manip -- libraries: apbs_generic;apbs_mg;apbs_pmgc -- Configuring done (7.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/science/apbs/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for apbs-1.5.102 [ 0% 1/102] /ccache/libexec/ccache/cc -Dmaloc_EXPORTS 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/wrkdirs/usr/ports/science/apbs/work/stage/usr/local/lib/libapbs_generic.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/apbs/work/stage/usr/local/lib/libapbs_generic.so" to "" -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/buildAd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/buildBd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/buildGd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/buildPd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/cgd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/gsd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/matvecd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/mgcsd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/mgdrvd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/mgsubd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/mikpckd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/mlinpckd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/mypdec.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/newtond.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/newdrvd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/powerd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/smoothd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/pmgc/mgfasd.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/lib/libapbs_pmgc.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/apbs/work/stage/usr/local/lib/libapbs_pmgc.so" to "" -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/mg/vgrid.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/mg/vmgrid.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/mg/vopot.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/mg/vpmg.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/include/apbs/mg/vpmgp.h -- Installing: /wrkdirs/usr/ports/science/apbs/work/stage/usr/local/lib/libapbs_mg.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/apbs/work/stage/usr/local/lib/libapbs_mg.so" to "" ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-04-04T05:38:33+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=c014f9c79a' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for apbs-1.5.102 ===> Building apbs-1.5.102 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for apbs-1.5.102 build of science/apbs | apbs-1.5.102 ended at Thu Apr 4 06:39:56 BST 2024 build time: 00:01:24