=>> Building science/antioch build started at Sat Apr 6 00:25:42 BST 2024 port directory: /usr/ports/science/antioch package name: antioch-0.4.0.156_14 building for: FreeBSD pkg-builder.dan.net.uk 13.2-RELEASE-p10 FreeBSD 13.2-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1018 Jul 26 2023 /usr/ports/science/antioch/Makefile Ports top last git commit: c2c35d895e Ports top unclean checkout: yes Port dir last git commit: df17c94227 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.99.20240122_1 Host OSVERSION: 1400097 Jail OSVERSION: 1302001 Job Id: 03 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p10 UNAME_r=13.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.99.20240122_1 MASTERMNT=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/03/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/13-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.99.20240122_1 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --disable-static --enable-eigen --with-eigen-include=/usr/local/include/eigen3 --enable-opencl --with-metaphysicl=/usr/local --with-viennacl=/usr/local/include --with-gsl=/usr/local --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/antioch/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/antioch/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/antioch/work/.cache HOME=/wrkdirs/usr/ports/science/antioch/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/antioch/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/antioch/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.72 CMAKE_PREFIX_PATH="/usr/local" CCACHE_DIR="/root/.ccache" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/antioch/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/antioch/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/antioch/work/.cache HOME=/wrkdirs/usr/ports/science/antioch/work TMPDIR="/tmp" PATH=/ccache/libexec/ccache:/wrkdirs/usr/ports/science/antioch/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/antioch/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DEFAULT_AUTOCONF=2.72 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/antioch" EXAMPLESDIR="share/examples/antioch" DATADIR="share/antioch" WWWDIR="www/antioch" ETCDIR="etc/antioch" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/antioch DOCSDIR=/usr/local/share/doc/antioch EXAMPLESDIR=/usr/local/share/examples/antioch WWWDIR=/usr/local/www/antioch ETCDIR=/usr/local/etc/antioch --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl mysql=8.0 imagemagick=7 samba=4.13 java=18 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache NO_CCACHE_DEPEND=1 CCACHE_WRAPPER_PATH= /ccache/libexec/ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> antioch-0.4.0.156_14 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9_1.pkg [pkg-builder.dan.net.uk] Installing pkg-1.20.9_1... [pkg-builder.dan.net.uk] Extracting pkg-1.20.9_1: .......... done ===> antioch-0.4.0.156_14 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of antioch-0.4.0.156_14 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by antioch-0.4.0.156_14 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by antioch-0.4.0.156_14 for building => SHA256 Checksum OK for libantioch-antioch-v0.4.0-156-g90ffa43_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by antioch-0.4.0.156_14 for building ===> Extracting for antioch-0.4.0.156_14 => SHA256 Checksum OK for libantioch-antioch-v0.4.0-156-g90ffa43_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for antioch-0.4.0.156_14 ===> Applying FreeBSD patches for antioch-0.4.0.156_14 from /usr/ports/science/antioch/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/metaphysicl/metaphysicl_version.h - not found ===> Installing existing package /packages/All/MetaPhysicL-1.3.3_1.pkg [pkg-builder.dan.net.uk] Installing MetaPhysicL-1.3.3_1... [pkg-builder.dan.net.uk] Extracting MetaPhysicL-1.3.3_1: .......... done ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/metaphysicl/metaphysicl_version.h - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/viennacl/vector.hpp - not found ===> Installing existing package /packages/All/viennacl-1.7.1_6.pkg [pkg-builder.dan.net.uk] Installing viennacl-1.7.1_6... [pkg-builder.dan.net.uk] `-- Installing ocl-icd-2.3.1_2... [pkg-builder.dan.net.uk] `-- Extracting ocl-icd-2.3.1_2: .......... done [pkg-builder.dan.net.uk] `-- Installing opencl-3.0.14_1... [pkg-builder.dan.net.uk] `-- Extracting opencl-3.0.14_1: .......... done [pkg-builder.dan.net.uk] Extracting viennacl-1.7.1_6: .......... done ===== Message from viennacl-1.7.1_6: -- ===> NOTICE: The viennacl port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/viennacl/vector.hpp - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.4.0_3.pkg [pkg-builder.dan.net.uk] Installing eigen-3.4.0_3... [pkg-builder.dan.net.uk] `-- Installing blas-3.12.0_1... [pkg-builder.dan.net.uk] | `-- Installing gcc13-13.2.0_4... [pkg-builder.dan.net.uk] | | `-- Installing binutils-2.40_5,1... [pkg-builder.dan.net.uk] | | `-- Installing gettext-runtime-0.22.3_1... [pkg-builder.dan.net.uk] | | | `-- Installing indexinfo-0.3.1... [pkg-builder.dan.net.uk] | | | `-- Extracting indexinfo-0.3.1: . done [pkg-builder.dan.net.uk] | | `-- Extracting gettext-runtime-0.22.3_1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing zstd-1.5.5_1... [pkg-builder.dan.net.uk] | | | `-- Installing liblz4-1.9.4_1,1... [pkg-builder.dan.net.uk] | | | `-- Extracting liblz4-1.9.4_1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting zstd-1.5.5_1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting binutils-2.40_5,1: .......... done [pkg-builder.dan.net.uk] | | `-- Installing gmp-6.3.0... [pkg-builder.dan.net.uk] | | `-- Extracting gmp-6.3.0: .......... done [pkg-builder.dan.net.uk] | | `-- Installing mpc-1.3.1_1... [pkg-builder.dan.net.uk] | | `-- Installing mpfr-4.2.1,1... [pkg-builder.dan.net.uk] | | `-- Extracting mpfr-4.2.1,1: .......... done [pkg-builder.dan.net.uk] | | `-- Extracting mpc-1.3.1_1: ...... done [pkg-builder.dan.net.uk] | `-- Extracting gcc13-13.2.0_4: .......... done create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) [pkg-builder.dan.net.uk] `-- Extracting blas-3.12.0_1: ..... done [pkg-builder.dan.net.uk] `-- Installing lapack-3.12.0_2... [pkg-builder.dan.net.uk] `-- Extracting lapack-3.12.0_2: .......... done [pkg-builder.dan.net.uk] Extracting eigen-3.4.0_3: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> antioch-0.4.0.156_14 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg-builder.dan.net.uk] Installing gmake-4.4.1... [pkg-builder.dan.net.uk] Extracting gmake-4.4.1: .......... done ===> antioch-0.4.0.156_14 depends on package: gmake>=4.4.1 - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on package: autoconf>=2.72 - not found ===> Installing existing package /packages/All/autoconf-2.72.pkg [pkg-builder.dan.net.uk] Installing autoconf-2.72... [pkg-builder.dan.net.uk] `-- Installing autoconf-switch-20220527... [pkg-builder.dan.net.uk] `-- Extracting autoconf-switch-20220527: ....... done [pkg-builder.dan.net.uk] `-- Installing m4-1.4.19_1,1... [pkg-builder.dan.net.uk] | `-- Installing libsigsegv-2.14... [pkg-builder.dan.net.uk] | `-- Extracting libsigsegv-2.14: ..... done [pkg-builder.dan.net.uk] `-- Extracting m4-1.4.19_1,1: .......... done [pkg-builder.dan.net.uk] `-- Installing perl5-5.36.3_1... [pkg-builder.dan.net.uk] `-- Extracting perl5-5.36.3_1: .......... done [pkg-builder.dan.net.uk] Extracting autoconf-2.72: .......... done ===== Message from libsigsegv-2.14: -- Note that the stackoverflow handling functions of this library need procfs mounted on /proc. ===> antioch-0.4.0.156_14 depends on package: autoconf>=2.72 - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on package: automake>=1.16.5 - not found ===> Installing existing package /packages/All/automake-1.16.5_1.pkg [pkg-builder.dan.net.uk] Installing automake-1.16.5_1... [pkg-builder.dan.net.uk] Extracting automake-1.16.5_1: .......... done ===> antioch-0.4.0.156_14 depends on package: automake>=1.16.5 - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on executable: libtoolize - not found ===> Installing existing package /packages/All/libtool-2.4.7_2.pkg [pkg-builder.dan.net.uk] Installing libtool-2.4.7_2... [pkg-builder.dan.net.uk] Extracting libtool-2.4.7_2: .......... done ===> antioch-0.4.0.156_14 depends on executable: libtoolize - found ===> Returning to build of antioch-0.4.0.156_14 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> antioch-0.4.0.156_14 depends on shared library: libgsl.so - not found ===> Installing existing package /packages/All/gsl-2.7.1_1.pkg [pkg-builder.dan.net.uk] Installing gsl-2.7.1_1... [pkg-builder.dan.net.uk] Extracting gsl-2.7.1_1: .......... done ===> antioch-0.4.0.156_14 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on shared library: libOpenCL.so - found (/usr/local/lib/libOpenCL.so) =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for antioch-0.4.0.156_14 libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:12: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:12: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:12: the top level configure.ac:66: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:66: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:66: the top level configure.ac:74: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:74: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:74: the top level configure.ac:90: warning: The macro 'AC_LANG_C' is obsolete. configure.ac:90: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... m4/common/acx_pthread.m4:48: ACX_PTHREAD is expanded from... m4/common/ax_check_cl.m4:39: AX_CHECK_CL is expanded from... m4/common/vexcl.m4:35: AX_PATH_VEXCL is expanded from... configure.ac:90: the top level configure.ac:90: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:90: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... m4/common/acx_pthread.m4:48: ACX_PTHREAD is expanded from... m4/common/ax_check_cl.m4:39: AX_CHECK_CL is expanded from... m4/common/vexcl.m4:35: AX_PATH_VEXCL is expanded from... configure.ac:90: the top level configure.ac:90: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:90: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... m4/common/ax_check_cl.m4:39: AX_CHECK_CL is expanded from... m4/common/vexcl.m4:35: AX_PATH_VEXCL is expanded from... configure.ac:90: the top level configure.ac:90: warning: The macro 'BOOST_THREADS' is obsolete. configure.ac:90: You should run autoupdate. m4/common/boost.m4:1206: BOOST_THREADS is expanded from... m4/common/vexcl.m4:35: AX_PATH_VEXCL is expanded from... configure.ac:90: the top level configure.ac:108: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:108: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... m4/common/eigen.m4:22: CONFIGURE_EIGEN is expanded from... configure.ac:108: the top level configure.ac:108: warning: The macro 'AC_LANG_CPLUSPLUS' is obsolete. configure.ac:108: You should run autoupdate. ./lib/autoconf/c.m4:270: AC_LANG_CPLUSPLUS is expanded from... m4/common/eigen.m4:22: CONFIGURE_EIGEN is expanded from... configure.ac:108: the top level configure.ac:108: warning: AC_CHECK_HEADERS($EIGEN_INC/Eigen/Eigen): you should use literals ./lib/autoconf/headers.m4:217: AC_CHECK_HEADERS is expanded from... m4/common/eigen.m4:22: CONFIGURE_EIGEN is expanded from... configure.ac:108: the top level configure.ac:172: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:172: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... m4/common/coverage.m4:25: AX_CODE_COVERAGE is expanded from... configure.ac:172: the top level configure.ac:21: installing 'build-aux/compile' configure.ac:17: installing 'build-aux/config.guess' configure.ac:17: installing 'build-aux/config.sub' configure.ac:18: installing 'build-aux/install-sh' configure.ac:18: installing 'build-aux/missing' examples/Makefile.am: installing 'build-aux/depcomp' parallel-tests: installing 'build-aux/test-driver' configure: loading site script /usr/ports/Templates/config.site checking build system type... amd64-portbld-freebsd13.2 checking host system type... amd64-portbld-freebsd13.2 checking target system type... amd64-portbld-freebsd13.2 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether gmake supports nested variables... yes checking whether UID '0' is supported by ustar format... yes checking whether GID '0' is supported by ustar format... yes checking how to create a ustar tar archive... (cached) /usr/bin/tar checking whether gmake supports nested variables... (cached) yes checking how to print strings... printf checking whether gmake supports the include directive... yes (GNU style) checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether cc accepts -g... yes checking for cc option to enable C11 features... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm -B checking the name lister (/usr/local/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 524288 checking how to convert amd64-portbld-freebsd13.2 file names to amd64-portbld-freebsd13.2 format... func_convert_file_noop checking how to convert amd64-portbld-freebsd13.2 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/local/bin/nm -B output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for stdio.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for strings.h... (cached) yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd13.2 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking Major version... 0 checking Minor version... 5 checking Point version... 0 checking for gcc... (cached) cc checking whether the compiler supports GNU C... (cached) yes checking whether cc accepts -g... (cached) yes checking for cc option to enable C11 features... (cached) none needed checking whether cc understands -c and -o together... (cached) yes checking dependency style of cc... (cached) gcc3 checking whether the compiler supports GNU C++... yes checking whether c++ accepts -g... yes checking for c++ option to enable C++11 features... none needed checking dependency style of c++... gcc3 checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd13.2 ld.so checking how to hardcode library paths into programs... immediate checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgfortran... no checking for pgf95... no checking for lf95... no checking for ftn... no checking for nagfor... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking whether the compiler supports GNU Fortran... no checking whether accepts -g... no checking CXXFLAGS for maximum warnings... -Wall checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... -D_THREAD_SAFE checking for Boost headers version >= 1.47.0... no configure: cannot find Boost headers version >= 1.47.0 checking for the toolset name used by Boost for c++... unknown checking for the flags needed to use pthreads... -pthread configure: /vexcl/vexcl.hpp not found configure: /include/vexcl/vexcl.hpp not found checking whether we are using the Microsoft C++ compiler... no checking for CL/cl.h... yes checking for OpenCL/cl.h... no checking for windows.h... no checking for OpenCL library... -lOpenCL test: -ge: unexpected operator configure: Boost not available, not searching for the Boost chrono library configure: Boost not available, not searching for the Boost date_time library test: -ge: unexpected operator configure: Boost not available, not searching for the Boost filesystem library configure: Boost not available, not searching for the Boost system library test: -ge: unexpected operator test: -lt: unexpected operator configure: Boost not available, not searching for the Boost thread library checking whether we are using the Microsoft C++ compiler... (cached) no checking for CL/cl.h... (cached) yes checking for OpenCL/cl.h... (cached) no checking for windows.h... (cached) no checking for OpenCL library... (cached) -lOpenCL checking for vexcl/vexcl.hpp... no configure: optional VEXCL library not found checking whether c++ supports C++11 features by default... yes checking for viennacl/vector.hpp... yes checking whether we are using the Microsoft C++ compiler... (cached) no checking for CL/cl.h... (cached) yes checking for OpenCL/cl.h... (cached) no checking for windows.h... (cached) no checking for OpenCL library... (cached) -lOpenCL configure: Boost not available, not searching for boost/numeric/ublas/vector.hpp checking for /usr/local/include/eigen3/Eigen/Eigen... yes checking for Eigen/Dense... yes checking for eigen - version >= 3.1.2... yes <<< Configuring library with Eigen support >>> checking for metaphysicl/metaphysicl_version.h... yes checking for metaphysicl - version >= 0.0.0... yes checking for -lmetaphysicl linkage... yes checking for grvy.h... no configure: optional GRVY library not found checking for gsl-config... /usr/local/bin/gsl-config checking for gsl - version >= 1.10... yes checking for gsl/gsl_math.h... yes checking for -lgsl linkage... checking for gsl_sf_gamma in -lgsl... yes checking for cppunit-config... no checking for Cppunit - version >= 1.10.0... no checking whether c++ supports C++11 features by default... (cached) yes checking whether c++ supports C++11 -> decltype(this->f())... no configure: No compiler supporting trailing decltype(this->f()) was found checking for C++11 static_assert support... yes checking for git... no checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/local/bin/perl find: /wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/{src,test}: No such file or directory checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating doxygen/txt_common/about_vpath.page config.status: creating test/kinetics_unit_air_5sp.sh config.status: creating test/kinetics_unit_thrust_air_5sp.sh config.status: creating test/kinetics_vec_unit_air_5sp.sh config.status: creating test/kinetics_regression_air_5sp.sh config.status: creating test/kinetics_regression_vec_air_5sp.sh config.status: creating test/photochemical_rate_unit.sh config.status: creating test/parsing_xml.sh config.status: creating test/fail_parsing_xml_1.sh config.status: creating test/fail_parsing_xml_2.sh config.status: creating test/parsing_chemkin.sh config.status: creating test/kinetics_reactive_scheme_unit.sh config.status: creating test/nasa_evaluator_unit.sh config.status: creating test/ascii_parser_unit.sh config.status: creating test/kinetics_partial_order_unit.sh config.status: creating src/utilities/include/antioch/antioch_version.h config.status: creating antioch.pc config.status: creating doxygen/Makefile config.status: creating doxygen/antioch.dox config.status: creating Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating examples/Makefile config.status: creating antioch_config.h.tmp config.status: executing antioch_config.h commands config.status: creating antioch_config.h - prefix ANTIOCH for antioch_config.h.tmp defines config.status: executing depfiles commands config.status: executing libtool commands ----------------------------------- SUMMARY ----------------------------------- Package version............... : antioch-0.5.0 C++ compiler.................. : c++ C++ compiler flags............ : -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall Install dir................... : /usr/local Build user.................... : Build host.................... : pkg-builder.dan.net.uk Configure date................ : 2024-04-05 23:29 Build architecture............ : amd64-portbld-freebsd13.2 Revision id................... : external Testing Options: Number of tuples............ : 2 CPPUnit..................... : no Optional Libraries: Eigen....................... : yes MetaPhysicL................. : yes METAPHYSICL_CPPFLAGS...... : -I/usr/local/include -I/usr/local/src METAPHYSICL_LDFLAGS....... : -L/usr/local/lib -Wl,-rpath,/usr/local/lib METAPHYSICL_LIBS.......... : -lmetaphysicl VexCL....................... : no ViennaCL.................... : yes VIENNACL_CPPFLAGS......... : -I/usr/local/include -pthread -D_THREAD_SAFE -pthread VIENNACL_LDFLAGS.......... : VIENNACL_LIBS............. : -lOpenCL -lm GRVY........................ : no GSL......................... : yes GSL_CPPFLAGS.............. : -I/usr/local/include GSL_LDFLAGS............... : -L/usr/local/lib -Wl,-rpath,/usr/local/lib GSL_LIBS.................. : -lgsl -lgslcblas ------------------------------------------------------------------------------- Configure complete, now type 'make' and then 'make install'. =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for antioch-0.4.0.156_14 Makefile:1249: warning: ignoring prerequisites on suffix rule definition Usage: update_license.pl [OPTION] LICENSE-FILE SOURCE-FILES... OPTIONS: -S dir use dir as location of source-files -c2f_comment convert c++ comments in license header to F90 style -c2sh_comment convert c++ comments in license header to shell script style echo 'updated source license headers' >.license.stamp gmake all-recursive gmake[1]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition Making all in src gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' depbase=`echo apps/version.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT apps/version.o -MD -MP -MF $depbase.Tpo -c -o apps/version.o apps/version.C &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo core/src/chemical_mixture.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT core/src/chemical_mixture.lo -MD -MP -MF $depbase.Tpo -c -o core/src/chemical_mixture.lo core/src/chemical_mixture.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT core/src/chemical_mixture.lo -MD -MP -MF core/src/.deps/chemical_mixture.Tpo -c core/src/chemical_mixture.C -fPIC -DPIC -o core/src/.libs/chemical_mixture.o depbase=`echo parsing/src/ascii_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/ascii_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/ascii_parser.lo parsing/src/ascii_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/ascii_parser.lo -MD -MP -MF parsing/src/.deps/ascii_parser.Tpo -c parsing/src/ascii_parser.C -fPIC -DPIC -o parsing/src/.libs/ascii_parser.o depbase=`echo parsing/src/blottner_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/blottner_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/blottner_parsing.lo parsing/src/blottner_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/blottner_parsing.lo -MD -MP -MF parsing/src/.deps/blottner_parsing.Tpo -c parsing/src/blottner_parsing.C -fPIC -DPIC -o parsing/src/.libs/blottner_parsing.o depbase=`echo parsing/src/cea_mixture_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/cea_mixture_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/cea_mixture_parsing.lo parsing/src/cea_mixture_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/cea_mixture_parsing.lo -MD -MP -MF parsing/src/.deps/cea_mixture_parsing.Tpo -c parsing/src/cea_mixture_parsing.C -fPIC -DPIC -o parsing/src/.libs/cea_mixture_parsing.o depbase=`echo parsing/src/cea_mixture_ascii_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/cea_mixture_ascii_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/cea_mixture_ascii_parsing.lo parsing/src/cea_mixture_ascii_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/cea_mixture_ascii_parsing.lo -MD -MP -MF parsing/src/.deps/cea_mixture_ascii_parsing.Tpo -c parsing/src/cea_mixture_ascii_parsing.C -fPIC -DPIC -o parsing/src/.libs/cea_mixture_ascii_parsing.o depbase=`echo parsing/src/chemkin_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/chemkin_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/chemkin_parser.lo parsing/src/chemkin_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/chemkin_parser.lo -MD -MP -MF parsing/src/.deps/chemkin_parser.Tpo -c parsing/src/chemkin_parser.C -fPIC -DPIC -o parsing/src/.libs/chemkin_parser.o parsing/src/chemkin_parser.C:776:100: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] out[i].erase(out[i].begin(), std::find_if(out[i].begin(), out[i].end(), std::not1(std::ptr_fun(std::isspace)))); ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:37:1: note: 'ptr_fun' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:1018:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:1007:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ parsing/src/chemkin_parser.C:778:86: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] out[i].erase(std::find_if(out[i].rbegin(), out[i].rend(), std::not1(std::ptr_fun(std::isspace))).base(), out[i].end()); ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:37:1: note: 'ptr_fun' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:1018:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:1007:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ parsing/src/chemkin_parser.C:776:100: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] out[i].erase(out[i].begin(), std::find_if(out[i].begin(), out[i].end(), std::not1(std::ptr_fun(std::isspace)))); ^ parsing/src/chemkin_parser.C:1080:49: note: in instantiation of member function 'Antioch::ChemKinParser::parse_coefficients_line' requested here ANTIOCH_NUMERIC_TYPE_CLASS_INSTANTIATE(Antioch::ChemKinParser); ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:37:1: note: 'ptr_fun' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:1018:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:1007:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ parsing/src/chemkin_parser.C:778:86: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] out[i].erase(std::find_if(out[i].rbegin(), out[i].rend(), std::not1(std::ptr_fun(std::isspace))).base(), out[i].end()); ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:37:1: note: 'ptr_fun' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:1018:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:1007:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ parsing/src/chemkin_parser.C:776:100: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] out[i].erase(out[i].begin(), std::find_if(out[i].begin(), out[i].end(), std::not1(std::ptr_fun(std::isspace)))); ^ parsing/src/chemkin_parser.C:1080:49: note: in instantiation of member function 'Antioch::ChemKinParser<>::parse_coefficients_line' requested here ANTIOCH_NUMERIC_TYPE_CLASS_INSTANTIATE(Antioch::ChemKinParser); ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:37:1: note: 'ptr_fun' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:1018:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:1007:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ parsing/src/chemkin_parser.C:778:86: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] out[i].erase(std::find_if(out[i].rbegin(), out[i].rend(), std::not1(std::ptr_fun(std::isspace))).base(), out[i].end()); ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:37:1: note: 'ptr_fun' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:1018:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:1007:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ parsing/src/chemkin_parser.C:776:100: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] out[i].erase(out[i].begin(), std::find_if(out[i].begin(), out[i].end(), std::not1(std::ptr_fun(std::isspace)))); ^ parsing/src/chemkin_parser.C:1080:49: note: in instantiation of member function 'Antioch::ChemKinParser::parse_coefficients_line' requested here ANTIOCH_NUMERIC_TYPE_CLASS_INSTANTIATE(Antioch::ChemKinParser); ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:37:1: note: 'ptr_fun' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:1018:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:1007:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ parsing/src/chemkin_parser.C:778:86: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] out[i].erase(std::find_if(out[i].rbegin(), out[i].rend(), std::not1(std::ptr_fun(std::isspace))).base(), out[i].end()); ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:37:1: note: 'ptr_fun' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:1018:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:1007:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ 8 warnings generated. depbase=`echo parsing/src/nasa_mixture_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/nasa_mixture_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/nasa_mixture_parsing.lo parsing/src/nasa_mixture_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/nasa_mixture_parsing.lo -MD -MP -MF parsing/src/.deps/nasa_mixture_parsing.Tpo -c parsing/src/nasa_mixture_parsing.C -fPIC -DPIC -o parsing/src/.libs/nasa_mixture_parsing.o depbase=`echo parsing/src/parser_base.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/parser_base.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/parser_base.lo parsing/src/parser_base.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/parser_base.lo -MD -MP -MF parsing/src/.deps/parser_base.Tpo -c parsing/src/parser_base.C -fPIC -DPIC -o parsing/src/.libs/parser_base.o depbase=`echo parsing/src/read_reaction_set_data.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/read_reaction_set_data.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/read_reaction_set_data.lo parsing/src/read_reaction_set_data.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/read_reaction_set_data.lo -MD -MP -MF parsing/src/.deps/read_reaction_set_data.Tpo -c parsing/src/read_reaction_set_data.C -fPIC -DPIC -o parsing/src/.libs/read_reaction_set_data.o depbase=`echo parsing/src/species_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/species_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/species_parsing.lo parsing/src/species_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/species_parsing.lo -MD -MP -MF parsing/src/.deps/species_parsing.Tpo -c parsing/src/species_parsing.C -fPIC -DPIC -o parsing/src/.libs/species_parsing.o depbase=`echo parsing/src/sutherland_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/sutherland_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/sutherland_parsing.lo parsing/src/sutherland_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/sutherland_parsing.lo -MD -MP -MF parsing/src/.deps/sutherland_parsing.Tpo -c parsing/src/sutherland_parsing.C -fPIC -DPIC -o parsing/src/.libs/sutherland_parsing.o depbase=`echo parsing/src/transport_species_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/transport_species_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/transport_species_parsing.lo parsing/src/transport_species_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/transport_species_parsing.lo -MD -MP -MF parsing/src/.deps/transport_species_parsing.Tpo -c parsing/src/transport_species_parsing.C -fPIC -DPIC -o parsing/src/.libs/transport_species_parsing.o depbase=`echo parsing/src/xml_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/xml_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/xml_parser.lo parsing/src/xml_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/xml_parser.lo -MD -MP -MF parsing/src/.deps/xml_parser.Tpo -c parsing/src/xml_parser.C -fPIC -DPIC -o parsing/src/.libs/xml_parser.o depbase=`echo transport/src/transport_mixture.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT transport/src/transport_mixture.lo -MD -MP -MF $depbase.Tpo -c -o transport/src/transport_mixture.lo transport/src/transport_mixture.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT transport/src/transport_mixture.lo -MD -MP -MF transport/src/.deps/transport_mixture.Tpo -c transport/src/transport_mixture.C -fPIC -DPIC -o transport/src/.libs/transport_mixture.o depbase=`echo utilities/src/antioch_version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/antioch_version.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/antioch_version.lo utilities/src/antioch_version.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/antioch_version.lo -MD -MP -MF utilities/src/.deps/antioch_version.Tpo -c utilities/src/antioch_version.C -fPIC -DPIC -o utilities/src/.libs/antioch_version.o depbase=`echo utilities/src/gsl_spliner_impl.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/gsl_spliner_impl.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/gsl_spliner_impl.lo utilities/src/gsl_spliner_impl.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/gsl_spliner_impl.lo -MD -MP -MF utilities/src/.deps/gsl_spliner_impl.Tpo -c utilities/src/gsl_spliner_impl.C -fPIC -DPIC -o utilities/src/.libs/gsl_spliner_impl.o depbase=`echo utilities/src/gsl_spliner_shim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/gsl_spliner_shim.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/gsl_spliner_shim.lo utilities/src/gsl_spliner_shim.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/gsl_spliner_shim.lo -MD -MP -MF utilities/src/.deps/gsl_spliner_shim.Tpo -c utilities/src/gsl_spliner_shim.C -fPIC -DPIC -o utilities/src/.libs/gsl_spliner_shim.o depbase=`echo utilities/src/string_utils.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/string_utils.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/string_utils.lo utilities/src/string_utils.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/string_utils.lo -MD -MP -MF utilities/src/.deps/string_utils.Tpo -c utilities/src/string_utils.C -fPIC -DPIC -o utilities/src/.libs/string_utils.o /bin/sh ../libtool --tag=CXX --mode=link c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -o libantioch.la -rpath /usr/local/lib core/src/chemical_mixture.lo parsing/src/ascii_parser.lo parsing/src/blottner_parsing.lo parsing/src/cea_mixture_parsing.lo parsing/src/cea_mixture_ascii_parsing.lo parsing/src/chemkin_parser.lo parsing/src/nasa_mixture_parsing.lo parsing/src/parser_base.lo parsing/src/read_reaction_set_data.lo parsing/src/species_parsing.lo parsing/src/sutherland_parsing.lo parsing/src/transport_species_parsing.lo parsing/src/xml_parser.lo transport/src/transport_mixture.lo utilities/src/antioch_version.lo utilities/src/gsl_spliner_impl.lo utilities/src/gsl_spliner_shim.lo utilities/src/string_utils.lo -lgsl -lgslcblas -lOpenCL -lm libtool: link: c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/crtbeginS.o core/src/.libs/chemical_mixture.o parsing/src/.libs/ascii_parser.o parsing/src/.libs/blottner_parsing.o parsing/src/.libs/cea_mixture_parsing.o parsing/src/.libs/cea_mixture_ascii_parsing.o parsing/src/.libs/chemkin_parser.o parsing/src/.libs/nasa_mixture_parsing.o parsing/src/.libs/parser_base.o parsing/src/.libs/read_reaction_set_data.o parsing/src/.libs/species_parsing.o parsing/src/.libs/sutherland_parsing.o parsing/src/.libs/transport_species_parsing.o parsing/src/.libs/xml_parser.o transport/src/.libs/transport_mixture.o utilities/src/.libs/antioch_version.o utilities/src/.libs/gsl_spliner_impl.o utilities/src/.libs/gsl_spliner_shim.o utilities/src/.libs/string_utils.o -L/usr/local/lib -lgsl -lgslcblas -lOpenCL -L/usr/lib -lc++ -lm -lc -lgcc -lgcc_s /usr/lib/crtendS.o /usr/lib/crtn.o -O2 -fstack-protector-strong -Wl,-rpath -Wl,/usr/local/lib -fstack-protector-strong -Wl,-soname -Wl,libantioch.so.0 -o .libs/libantioch.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libantioch.so.0" && ln -s "libantioch.so.0.0.0" "libantioch.so.0") libtool: link: (cd ".libs" && rm -f "libantioch.so" && ln -s "libantioch.so.0.0.0" "libantioch.so") libtool: link: ( cd ".libs" && rm -f "libantioch.la" && ln -s "../libantioch.la" "libantioch.la" ) /bin/sh ../libtool --tag=CXX --mode=link c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -L/usr/local/lib -Wl,-rpath,/usr/local/lib -fstack-protector-strong -o antioch_version apps/version.o libantioch.la -lgsl -lgslcblas -lOpenCL -lm libtool: link: c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -Wl,-rpath -Wl,/usr/local/lib -fstack-protector-strong -o .libs/antioch_version apps/version.o -L/usr/local/lib ./.libs/libantioch.so -lm -lgsl -lgslcblas -lOpenCL -Wl,-rpath -Wl,/usr/local/lib gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' Making all in test gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/test' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/test' Making all in doxygen gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/doxygen' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/doxygen' Making all in share gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/share' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/share' gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for antioch-0.4.0.156_14 ===> Generating temporary packing list Makefile:1249: warning: ignoring prerequisites on suffix rule definition gmake install-recursive gmake[1]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition Making install in src gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libantioch.la '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libantioch.so.0.0.0 /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib/libantioch.so.0.0.0 libtool: install: (cd /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib && { ln -s -f libantioch.so.0.0.0 libantioch.so.0 || { rm -f libantioch.so.0 && ln -s libantioch.so.0.0.0 libantioch.so.0; }; }) libtool: install: (cd /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib && { ln -s -f libantioch.so.0.0.0 libantioch.so || { rm -f libantioch.so && ln -s libantioch.so.0.0.0 libantioch.so; }; }) libtool: install: /usr/bin/install -c .libs/libantioch.lai /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib/libantioch.la libtool: warning: remember to run 'libtool --finish /usr/local/lib' /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/bin' /bin/sh ../libtool --mode=install install -s -m 555 antioch_version '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/bin' libtool: warning: 'libantioch.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/antioch_version /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/bin/antioch_version /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' install -m 0644 core/include/antioch/chemical_species.h core/include/antioch/chemical_mixture.h core/include/antioch/kinetics_conditions.h units/include/antioch/converter.h units/include/antioch/insi.h units/include/antioch/siprefix.h units/include/antioch/unit_base.h units/include/antioch/unit_defs.h units/include/antioch/units.h units/include/antioch/unit_store.h particles_flux/include/antioch/sigma_bin_converter.h particles_flux/include/antioch/particle_flux.h kinetics/include/antioch/kinetics_enum.h kinetics/include/antioch/kinetics_type.h kinetics/include/antioch/constant_rate.h kinetics/include/antioch/hercourtessen_rate.h kinetics/include/antioch/berthelot_rate.h kinetics/include/antioch/arrhenius_rate.h kinetics/include/antioch/berthelothercourtessen_rate.h kinetics/include/antioch/kooij_rate.h kinetics/include/antioch/vanthoff_rate.h kinetics/include/antioch/photochemical_rate.h kinetics/include/antioch/reaction_enum.h kinetics/include/antioch/reaction.h kinetics/include/antioch/elementary_reaction.h kinetics/include/antioch/duplicate_reaction.h kinetics/include/antioch/threebody_reaction.h kinetics/include/antioch/falloff_reaction.h kinetics/include/antioch/falloff_threebody_reaction.h kinetics/include/antioch/lindemann_falloff.h kinetics/include/antioch/troe_falloff.h kinetics/include/antioch/reaction_set.h kinetics/include/antioch/reaction_parsing.h kinetics/include/antioch/kinetics_parsing.h kinetics/include/antioch/kinetics_evaluator.h parsing/include/antioch/tinyxml2.h parsing/include/antioch/tinyxml2_imp.h parsing/include/antioch/read_reaction_set_data.h parsing/include/antioch/read_reaction_set_data_xml.h parsing/include/antioch/blottner_parsing.h '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' install -m 0644 parsing/include/antioch/sutherland_parsing.h parsing/include/antioch/cea_mixture_parsing.h parsing/include/antioch/nasa_mixture_parsing.h parsing/include/antioch/cea_mixture_ascii_parsing.h parsing/include/antioch/species_parsing.h parsing/include/antioch/transport_species_parsing.h parsing/include/antioch/transport_species_ascii_parsing.h parsing/include/antioch/nasa_mixture_ascii_parsing.h parsing/include/antioch/parsing_enum.h parsing/include/antioch/xml_parser.h parsing/include/antioch/chemkin_definitions.h parsing/include/antioch/chemkin_parser.h parsing/include/antioch/ascii_parser.h parsing/include/antioch/parser_base.h parsing/include/antioch/constant_lewis_diffusivity_building.h parsing/include/antioch/eucken_thermal_conductivity_building.h parsing/include/antioch/kinetics_theory_viscosity_building.h parsing/include/antioch/kinetics_theory_thermal_conductivity_building.h parsing/include/antioch/ascii_parser_instantiation_macro.h parsing/include/antioch/blottner_parsing_instantiate_macro.h parsing/include/antioch/cea_mixture_ascii_parsing_instantiate_macro.h parsing/include/antioch/nasa_mixture_parsing_instantiate_macro.h parsing/include/antioch/read_reaction_set_data_instantiate_macro.h parsing/include/antioch/species_parsing_instantiation_macro.h parsing/include/antioch/sutherland_parsing_instantiate_macro.h parsing/include/antioch/xml_parser_instantiation_macro.h thermo/include/antioch/nasa_curve_fit_base.h thermo/include/antioch/nasa7_curve_fit.h thermo/include/antioch/nasa9_curve_fit.h thermo/include/antioch/cea_curve_fit.h thermo/include/antioch/temp_cache.h thermo/include/antioch/nasa_mixture.h thermo/include/antioch/nasa_evaluator.h thermo/include/antioch/cea_mixture.h thermo/include/antioch/cea_evaluator.h thermo/include/antioch/stat_mech_thermo.h thermo/include/antioch/ideal_gas_micro_thermo.h thermo/include/antioch/macro_micro_thermo_base.h transport/include/antioch/mixture_transport_base.h transport/include/antioch/mixture_viscosity.h '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' install -m 0644 transport/include/antioch/mixture_conductivity.h transport/include/antioch/mixture_diffusion.h transport/include/antioch/wilke_mixture.h transport/include/antioch/wilke_evaluator.h transport/include/antioch/mixture_averaged_transport_mixture.h transport/include/antioch/mixture_averaged_transport_evaluator.h transport/include/antioch/lennard_jones_potential.h transport/include/antioch/stockmayer_potential.h transport/include/antioch/transport_mixture.h transport/include/antioch/transport_species.h viscosity/include/antioch/species_viscosity_base.h viscosity/include/antioch/blottner_viscosity.h viscosity/include/antioch/sutherland_viscosity.h viscosity/include/antioch/kinetics_theory_viscosity.h diffusion/include/antioch/constant_lewis_diffusivity.h diffusion/include/antioch/molecular_binary_diffusion.h diffusion/include/antioch/binary_diffusion_base.h diffusion/include/antioch/species_diffusion_base.h diffusion/include/antioch/diffusion_traits.h thermal_conduction/include/antioch/eucken_thermal_conductivity.h thermal_conduction/include/antioch/kinetics_theory_thermal_conductivity.h thermal_conduction/include/antioch/rotational_relaxation.h thermal_conduction/include/antioch/species_conductivity_base.h thermal_conduction/include/antioch/conductivity_traits.h utilities/include/antioch/antioch_exceptions.h utilities/include/antioch/antioch_asserts.h utilities/include/antioch/cmath_shims.h utilities/include/antioch/default_filename.h utilities/include/antioch/eigen_utils.h utilities/include/antioch/eigen_utils_decl.h utilities/include/antioch/input_utils.h utilities/include/antioch/math_constants.h utilities/include/antioch/metaprogramming.h utilities/include/antioch/metaprogramming_decl.h utilities/include/antioch/metaphysicl_utils.h utilities/include/antioch/metaphysicl_utils_decl.h utilities/include/antioch/physical_constants.h utilities/include/antioch/string_utils.h utilities/include/antioch/valarray_utils.h utilities/include/antioch/valarray_utils_decl.h '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' install -m 0644 utilities/include/antioch/vector_utils.h utilities/include/antioch/vector_utils_decl.h utilities/include/antioch/vexcl_utils.h utilities/include/antioch/vexcl_utils_decl.h utilities/include/antioch/gsl_spliner.h utilities/include/antioch/gsl_spliner_impl.h utilities/include/antioch/gsl_spliner_shim.h utilities/include/antioch/gsl_spliner_policy.h utilities/include/antioch/antioch_numeric_type_instantiate_macro.h ../src/utilities/include/antioch/antioch_version.h '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' Making install in test gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/test' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/test' gmake[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' install -m 0644 common/testing_utils.h standard_unit/reaction_rate_test_base.h standard_unit/reaction_rate_vector_test_base.h standard_unit/arrhenius_rate_test_helper.h standard_unit/arrhenius_rate_vector_test_base.h standard_unit/nasa_test_helper.h standard_unit/nasa7_thermo_test_base.h standard_unit/nasa9_thermo_test_base.h standard_unit/thermo_vector_test_base.h standard_unit/nasa7_mixture_vector_test_base.h standard_unit/nasa9_mixture_vector_test_base.h gsl_unit/gsl_spliner_test_base.h '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/test' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/test' Making install in doxygen gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/doxygen' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/doxygen' gmake[3]: Nothing to be done for 'install-exec-am'. gmake[3]: Nothing to be done for 'install-data-am'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/doxygen' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/doxygen' Making install in share gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/share' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/share' gmake[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/share/aclocal' install -m 0644 ../share/aclocal/antioch.m4 '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/share/aclocal' /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/share/antioch/default_files' install -m 0644 ../share/antioch_default_files/antioch_default_blottner_coefficient.dat ../share/antioch_default_files/antioch_default_chemical_mixture.dat ../share/antioch_default_files/antioch_default_chemical_species.dat ../share/antioch_default_files/antioch_default_electronic_data.dat ../share/antioch_default_files/antioch_default_sutherland_coefficient.dat ../share/antioch_default_files/antioch_default_thermo_data.dat ../share/antioch_default_files/antioch_default_thermo_data_NASA7.dat ../share/antioch_default_files/antioch_default_transport_species_data.dat ../share/antioch_default_files/antioch_default_vibrational_data.dat '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/share/antioch/default_files' /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/share/antioch/xml_inputs' install -m 0644 ../share/xml_inputs/gri30.xml ../share/xml_inputs/nasa9_thermo.xml '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/share/antioch/xml_inputs' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/share' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/share' gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition gmake[3]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition gmake[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include' install -m 0644 antioch_config.h '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include' /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib/pkgconfig' install -m 0644 antioch.pc '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib/pkgconfig' gmake install-data-hook gmake[4]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition cd /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include && cat antioch_config.h | /usr/bin/sed "s,\(define ANTIOCH_DEFAULT_FILES_PATH\).*$,\1 "\"/usr/local/share/antioch_default_files/\""," > config.replaced ; \ cd /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include && mv config.replaced antioch_config.h ; gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2024-04-05T23:25:42+0000' 'PKG_NOTE_ports_top_git_hash=c2c35d895e' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=df17c94227' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.99.20240122_1' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for antioch-0.4.0.156_14 ===> Building antioch-0.4.0.156_14 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for antioch-0.4.0.156_14 build of science/antioch | antioch-0.4.0.156_14 ended at Sat Apr 6 00:31:31 BST 2024 build time: 00:05:50